LOC101268922 (LOC101268922)


Basic Information

Item Value
gene id LOC101268922
gene name LOC101268922
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 47396012 ~ 47420888 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001281336.1
TCGGATCAAGGGTTGTGTGGATTATTTTTTTTTCTAAAGAAAACGGGCGAGCTTCGTTTTTTTCTCGTGGATATAATAATTCTAGTATTTTACCAGGATATTTAGCCTATTGGCTCAGAATACCACAAAAAAAATCCTACTCATAACCATACGCGCAAAGTAATGTTACAATGTTTTTCTTTATACATAGCACACTGATGGAATGGAACGAATGTAGCATTTAATGTTCACAGTAGCCTAGCTCTACATTGTAACAATTTCTCTATGCTGCTATTTTGTATTCTAGATGCTCAGCGTTCCTACATTGACATTAAGATTTATGTTTCGATATAGCTGTGTATTAGCAGTAGGCCTATTATAGTGTTATAATAATACCGTTAAGGTGATGGTTAATTTCTCTTTACAGAGAAGGTTACTATCACGGCAGGAgccttgacattttttttttttttgtggggttTAGTTTTGAGAAAATTAGACTGGCGTATGCTACAGATTTTCTTTGCTTCTCCACCTCCCAGTTTCTCCATAATAATATCTCAGGCTGCTTGTCGTTGCCTGGACTCGGATCCCGGAATCTTCATGATTTGCGGACATCATGCTCGTTTTTTAGCCGGGAAACCCTCTTTTCGTCCCGCATGTTTAGGACCAAACGAACGGGGCTCGTCCGGCGACTCTGGAGGAGCCGTGCGCCCGTCGAGGGCGACGGGGAGACGGATACACGAACGCATGGATCCCGGGGTTGCTGTATGGGTAAATCGACGAAGGTTGCCGGGAAAACTAGCGCCGGAACGGAGGCTGAATTGAAAGCCCTGACCCACTCGATACTGAAAAAAATCAAAGAGAAACAATTAGAGGGGCTCTTGCAAGCGGTGGAGTCAAAGGGGGGTGCACGGAGCCCCTGCCTGCTCCTACCCAGCAAAGTGGACACCAAACTGGGTCAGCAGTCTTATTCCCTCCCCTTGCTGCTCTACAAAGTGTTTCGGTGGTCGGACCTCAGGCATTGCTCGGAATTAAAAAGGCTACCTTGCTGTGAATCCTATGGGAAAATTAACCCAGAACTCGTTTGCTGCAATCCTCACCACATGAGCAGGCTTTGTGAACTCGAGTCTCCCCCTCCGCCTTATTCCCGATACCCAATGGACTTTCTTAAACCACCCGATTCACTAGACTCGGGGCCTTCATCCACTGAGACTGGAGGAACTACCTACTCGGCCCCCGTGGGGCTCTCAGATTCCCAGGCTCTCCAGGAGTCGGGTGACAGATCCCACTGGTGTGTGGTTGCGTACTGGGAGGAGAAGACACGCGTGGGGCGCCTCTACTCGGTCCAGGAGCCTTCCCTGGACATCTTCTACGACCTACCTCAGGGGAACGGCTTCTGCCTGGGCCAGCTCAGCTCCGACAACAAGAGCCCGCTAGTTCAAATGGTGCGGACCAAGATCGGCTACGGCATCCAGCTGAGTCGCGAGCCCGACGGGGTGTGGGTGTACAACCGCAGCTGCTACCCCATCTTTATCAAGTCGGCCACACTGGACAATCCCGACTCGCGGACTTTACTGGTGCATAAAGTGTTCCCCGGATTCTCCATTAAGGCCTTTGACTTTGAGAAGGCAGACAGCCTGCAGAGGCCTAACGATCACGAGTTCACACAGCAGCCGAGGACTGGGTTTACTGTACAGATCAGCTTTGTGAAGGGCTGGGGTCAGTGCTACACAAGACAGTTTATTAGTAGCTGCCCCTGTTGGTTGGAGGTTATATTCAACAACCAATAGCAGCAATGGATTAACCTTCCTCTCCCGAGGAGTGTACCGAGGACACGGACTAGTCCTTTActtatgctttttttttttctctctcagaaGACAGAagtttgaaaaaaaataaaagatgTTTAAAGAAAAAAGAAGAGACAAGCAAACCCCAATGAACTTGTTTAATATGACAAATTACTCTAAGATTGAATTAAAGTGAAATAAAAAGcgaaaatgtattttatgttatatataaatatattattacTTGTAAATATGAAGACGTTTTATATGCATCATTATTTATGTATTGTGCAATGTGTTGATGAGAAAAAATGAAATAAGATGCACTTTGCTTAATATAAATGCAAACAAAGAAATGCcaaaataaaaatatgaataaaTGTT

Function

NR:

description
Smad7

GO:

id name namespace
GO:0007179 transforming growth factor beta receptor signaling pathway biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K19631 SMAD7; mothers against decapentaplegic homolog 7

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001281336.1 True 2159 mRNA 0.45 4 47396012 47420888

Neighbor

gene id symbol gene type direction distance location
LOC110523972 LOC106561256 coding upstream 21902 47229658 ~ 47374110 (+)
LOC110523971 LOC106561271 coding upstream 166929 47220417 ~ 47229083 (+)
LOC110523969 LOC106561351 coding upstream 268727 47124777 ~ 47127285 (+)
LOC110523967 LOC106561354 coding upstream 287996 47090294 ~ 47108016 (+)
LOC110523966 LOC106561364 coding upstream 339464 47039185 ~ 47056548 (+)
LOC110523974 LOC106561213 coding downstream 351529 47772417 ~ 47798660 (+)
LOC118964526 NA coding downstream 387601 47808489 ~ 47820956 (+)
klhl8 klhl8 coding downstream 535912 47956800 ~ 47983019 (+)
LOC110523977 LOC106560709 coding downstream 592107 48012995 ~ 48082406 (+)
LOC110522955 ppef2 coding downstream 675131 48096019 ~ 48106232 (+)
G407320 NA non-coding upstream 15568 47379843 ~ 47380444 (+)
G407323 NA non-coding upstream 17804 47377868 ~ 47378208 (+)
G407410 NA non-coding upstream 24047 47362799 ~ 47371965 (+)
G407255 NA non-coding upstream 230113 47163760 ~ 47165899 (+)
G407246 NA non-coding upstream 267218 47128599 ~ 47128794 (+)
G407429 NA non-coding downstream 5033 47425921 ~ 47426139 (+)
G407439 NA non-coding downstream 25892 47446780 ~ 47447100 (+)
G407789 NA non-coding downstream 48084 47468972 ~ 47469225 (+)
G407792 NA non-coding downstream 50151 47471039 ~ 47471248 (+)
G407810 NA non-coding downstream 64245 47485133 ~ 47485333 (+)
G406484 NA other upstream 712893 46682863 ~ 46683119 (+)
G406401 NA other upstream 830407 46564891 ~ 46565605 (+)
mlana mlana other upstream 927865 46449922 ~ 46468147 (+)
LOC110523937 LOC106605670 other upstream 1825455 45567600 ~ 45571386 (+)
G407442 NA other downstream 29911 47450799 ~ 47451146 (+)
G408135 NA other downstream 327925 47748813 ~ 47754194 (+)
G408177 NA other downstream 400702 47821590 ~ 47827475 (+)
G408222 NA other downstream 615738 48036626 ~ 48039093 (+)
LOC110523980 LOC106560682 other downstream 729287 48149869 ~ 48221948 (+)

Expression

LOC101268922(LOC101268922) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 15.
End of interactive chart.

LOC101268922(LOC101268922) Expression in each Bioproject

Bar chart with 20 bars.
LOC101268922(LOC101268922) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 400.
End of interactive chart.

Co-expression Network