Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110523983 |
| gene name | LOC106560666 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 48423554 ~ 48489102 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021603215.2 | False | 1987 | mRNA | 0.42 | 7 | 48424865 | 48447883 |
| XM_021603214.2 | False | 1969 | mRNA | 0.42 | 7 | 48424865 | 48447888 |
| TU463759 | True | 1756 | lncRNA | 0.37 | 2 | 48423554 | 48489102 |
48,360,000
48,370,000
48,380,000
48,390,000
48,400,000
48,410,000
48,420,000
48,430,000
48,440,000
48,450,000
48,460,000
48,470,000
48,480,000
48,490,000
NC_048569.1
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| nup54 | nup54 | coding | downstream | 299187 | 48106327 ~ 48125678 (-) |
| LOC110523978 | LOC106605670 | coding | downstream | 395189 | 48027781 ~ 48029676 (-) |
| LOC110523975 | NA | coding | downstream | 514620 | 47826801 ~ 47910245 (-) |
| LOC118964754 | NA | coding | downstream | 729183 | 47695630 ~ 47695682 (-) |
| LOC110523973 | ctif | coding | downstream | 762195 | 47530422 ~ 47662670 (-) |
| pdcl | pdcl | coding | upstream | 92194 | 48540082 ~ 48544432 (-) |
| pdxp | plpp | coding | upstream | 126862 | 48574750 ~ 48580663 (-) |
| mier3a | LOC105008092 | coding | upstream | 199018 | 48646906 ~ 48693022 (-) |
| LOC110523989 | LOC106560554 | coding | upstream | 282095 | 48729983 ~ 48847550 (-) |
| notch1 | notch1 | coding | upstream | 433505 | 48881393 ~ 48954869 (-) |
| G408826 | sec16a | non-coding | downstream | 9131 | 48415341 ~ 48415734 (-) |
| G408825 | NA | non-coding | downstream | 9608 | 48414975 ~ 48415257 (-) |
| G408823 | NA | non-coding | downstream | 10880 | 48413254 ~ 48413985 (-) |
| G408824 | NA | non-coding | downstream | 12720 | 48411664 ~ 48412145 (-) |
| G408821 | NA | non-coding | downstream | 23386 | 48401165 ~ 48401479 (-) |
| G408855 | rl28 | non-coding | upstream | 33910 | 48481798 ~ 48484591 (-) |
| G408873 | NA | non-coding | upstream | 61649 | 48509537 ~ 48509835 (-) |
| G408875 | NA | non-coding | upstream | 65732 | 48513620 ~ 48513830 (-) |
| G408856 | NA | non-coding | upstream | 84534 | 48532422 ~ 48537040 (-) |
| G408891 | NA | non-coding | upstream | 97181 | 48545069 ~ 48545365 (-) |
| G408782 | sec16a | other | downstream | 67300 | 48353302 ~ 48357565 (-) |
| G408664 | NA | other | downstream | 201645 | 48221952 ~ 48223220 (-) |
| LOC110523962 | LOC106561388 | other | downstream | 1814750 | 46572673 ~ 46610314 (-) |
| G406588 | NA | other | downstream | 2190328 | 46219667 ~ 46234537 (-) |
| LOC110523950 | LOC106561514 | other | downstream | 2401025 | 46019698 ~ 46023840 (-) |
| G410168 | NA | other | upstream | 1086028 | 49533916 ~ 49576456 (-) |
| G411459 | NA | other | upstream | 2171003 | 50618891 ~ 50619175 (-) |
| G411929 | NA | other | upstream | 2274426 | 50722314 ~ 50723061 (-) |
| G411930 | NA | other | upstream | 2275271 | 50723159 ~ 50724077 (-) |
| LOC110524003 | LOC106613485 | other | upstream | 2731870 | 51179758 ~ 51228505 (-) |
| G408894 | NA | non-coding | upstream | 63122 | 48552224 ~ 48552468 (-) |
