LOC110523983 (LOC106560666)


Basic Information

Item Value
gene id LOC110523983
gene name LOC106560666
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 48423554 ~ 48489102 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603215.2
atagaagaagaagaatctTTGCTGACGACATAAGAAAAATAAATTAATGCACTCGAAATGATTATCAGTCTTAGTTGTTTAAGTTCGGATATTGATTGAACGAACAGTACACGGATCCTATTGTTATCGATGTGCCTCTGAATCGTATCTGTGtcaacaagctagctagctaatttagctatACATCATTAATTGAGTCTGTCACTGTCAGTCTGATCTAGCTCGTCGATCATAGTTAAGATGTGTTGCAGCTTTTGAAGATAGTTACCTCTGTACTTTTTGTCTCAAATATGAACTTGTAAGTCGGAAAACGAATCAGACAATAGAGAATGTCAGGTTAGCATTGTAAACAACAGCAGCGAATAACCAGTCAAACATCACATCATCATGGAGGATGAGGAAGATCTCGAGGTACTTGGCGAACAACTGTACGATTTAATTTACCCCAAGCACGCTGAGATCGCCGGGAAACTCACAGATGGCATTGTAATTGGGTCGGAGGCATGTTGCTGGAACTACCTGGTCCTGTCCTGACTCGGATGCAGCAGGATGAAGCGATGCTGACAGAGGCCCTTGAGAAAGCCCTCAGAGCTCTGCAACTACCTCAGGGCCCCAGCAATACAAGGATGTCAAAGGAGGAAGATGAAGCATCTGCCTCTTCTGACTCGCTTGGGGAACAGCTGTTTGAGCTCGTGGACATCTACAACACTGGCCACACACAGAAAATCACTGGCATGCTACTGGAGCAGCATAAAGAAGCGGTGCTGCATCTTCTCTCAGAACCCTCACTACTGGAGGAGCAGGTGAACCTGGCCTTGAAGACACTGCAGCAGCTGGGTGTGGAAGAGACAGATGTGAGTGACTCATCAGATGCCGATGACACAGAGAGGCTGGAAGAGAGGCTGTTTCTACTGGTGCAGGAGATGGACGCAGTGCACTCAAATGACATTACAGGCATGCTTTTGGAGATGGACCCTGCAGCTCTCAGACAGATGCTGAACGACCGCACCATGTTGGAGGGAGCCGTTCAAAAAGCACAAGCAGCGCTGGAAAGCATTTGGATCCAAGAGGACAAAGAAATCACCAAATCCAAATGAAGTTGGCCCAAATACTGTGACATTTCAGCTGAAGAAAACTACTTTATGAACACAAGAACATTTATGTGCCACTAACCCACAGGATCATAGCTGCCATGAAGGGatgtatgtatatactgcattctaaGTGGCGATTCCTGATTTCAGATATTTTTCTCACTCCAACACTTGTCAGTGACTTGTTTCGGAGTGCAATGCACTTTAGTTAAGGCCACACTCATGATTGGACAGGAAGGGGAATATGAGCCAGTGAAGTGTGCTGCGACGCCCTCACACACTTGCTAAAAATAAAACCAGGCACCCTACACTTCTTGAAATATACATGCAAATGCTCCTTTAGACTGCAGACTTCAGGAGTGGAGAATGGAACAGGCCTAtagtctttttttttgttgcttccaATGCTATAGGAGAATTTGACAACTGTCTGGGTTGATTGGATTTTTCTACTTGCCAGAGTTGTCAATGAGGGATAGGTAGTGCTGGTCCAAAATACTTTAATCTGTGAGAAAGTAACTACATCTGTAGTGCCACAGTGATGCCAACAGACTTGCACACATTTTAGGTCCACTGGTAGTTTGGGGGATATTTGTTTGTACTTCACTCAATAATAAAATTGAATTCAGTAACATTACACAAATATTAAAATATTCCATATTCAGACACTTGTTGGGCCAACTGTTGGGATGTACTGCAATAATGTGTGAATAGGAAATGTATTTTGATATGTAGATAAAACACAACATGATGAACCTTGGATACTAATCAGACAGAACAAAATTAAACATTCTTTCAAAGTGCTAAAGAGCGCAAAGATATCTTTATTTATTACCATTTTACAGGGTTGAATTCCAAAACAGGAAAAATCAACAGCTTTTCTCAGACAAAAA
>XM_021603214.2
ttatcatagaagaagaagaatctTTGCTGACGACATAAGAAAAATAAATTAATGCACTCGAAATGATTATCAGTCTTAGTTGTTTAAGTTCGGATATTGATTGAACGAACAGTACACGGATCCTATTGTTATCGATGTGCCTCTGAATCGTATCTGTGtcaacaagctagctagctaatttagctatACATCATTAATTGAGTCTGTCACTGTCAGTCTGATCTAGCTCGTCGATCATAGTTAAGATGTGTTGCAGCTTTTGAAGATAGTTACCTCTGTACTTTTTGTCTCAAATATGAACTTGTAAGTCGGAAAACGAATCAGACAATAGAGAATGTCAGGTTAGCATTGTAAACAACAGCAGCGAATAACCAGTCAAACATCACATCATCATGGAGGATGAGGAAGATCTCGAGGTACTTGGCGAACAACTGTACGATTTAATTTACCCCAAGCACGCTGAGATCGCCGGGAAACTCACAGGCATGTTGCTGGAACTACCTGGTCCTGTCCTGACTCGGATGCAGCAGGATGAAGCGATGCTGACAGAGGCCCTTGAGAAAGCCCTCAGAGCTCTGCAACTACCTCAGGGCCCCAGCAATACAAGGATGTCAAAGGAGGAAGATGAAGCATCTGCCTCTTCTGACTCGCTTGGGGAACAGCTGTTTGAGCTCGTGGACATCTACAACACTGGCCACACACAGAAAATCACTGGCATGCTACTGGAGCAGCATAAAGAAGCGGTGCTGCATCTTCTCTCAGAACCCTCACTACTGGAGGAGCAGGTGAACCTGGCCTTGAAGACACTGCAGCAGCTGGGTGTGGAAGAGACAGATGTGAGTGACTCATCAGATGCCGATGACACAGAGAGGCTGGAAGAGAGGCTGTTTCTACTGGTGCAGGAGATGGACGCAGTGCACTCAAATGACATTACAGGCATGCTTTTGGAGATGGACCCTGCAGCTCTCAGACAGATGCTGAACGACCGCACCATGTTGGAGGGAGCCGTTCAAAAAGCACAAGCAGCGCTGGAAAGCATTTGGATCCAAGAGGACAAAGAAATCACCAAATCCAAATGAAGTTGGCCCAAATACTGTGACATTTCAGCTGAAGAAAACTACTTTATGAACACAAGAACATTTATGTGCCACTAACCCACAGGATCATAGCTGCCATGAAGGGatgtatgtatatactgcattctaaGTGGCGATTCCTGATTTCAGATATTTTTCTCACTCCAACACTTGTCAGTGACTTGTTTCGGAGTGCAATGCACTTTAGTTAAGGCCACACTCATGATTGGACAGGAAGGGGAATATGAGCCAGTGAAGTGTGCTGCGACGCCCTCACACACTTGCTAAAAATAAAACCAGGCACCCTACACTTCTTGAAATATACATGCAAATGCTCCTTTAGACTGCAGACTTCAGGAGTGGAGAATGGAACAGGCCTAtagtctttttttttgttgcttccaATGCTATAGGAGAATTTGACAACTGTCTGGGTTGATTGGATTTTTCTACTTGCCAGAGTTGTCAATGAGGGATAGGTAGTGCTGGTCCAAAATACTTTAATCTGTGAGAAAGTAACTACATCTGTAGTGCCACAGTGATGCCAACAGACTTGCACACATTTTAGGTCCACTGGTAGTTTGGGGGATATTTGTTTGTACTTCACTCAATAATAAAATTGAATTCAGTAACATTACACAAATATTAAAATATTCCATATTCAGACACTTGTTGGGCCAACTGTTGGGATGTACTGCAATAATGTGTGAATAGGAAATGTATTTTGATATGTAGATAAAACACAACATGATGAACCTTGGATACTAATCAGACAGAACAAAATTAAACATTCTTTCAAAGTGCTAAAGAGCGCAAAGATATCTTTATTTATTACCATTTTACAGGGTTGAATTCCAAAACAGGAAAAATCAACAGCTTTTCTCAGACAAAAA
>TU463759
gttcatcatatatgcacagtcactttaacgatacctacatgttaatactacctcaataagcctgactaacaggtgtctgtatatagccttaatactcttttttcaaatgtctttttactgttgttttatttcttcacttacctacacagacacacacctttttttcctgcaccattggttagagcctgtaagtaagtatttcactgtaagatctacctgttgtattcggcgcaagtgacaaataaactttgatttgatgtcggggcctgttcccgagggagcTGTATATCCTCTGCCTCGGGCTCGTCagtcgtgaaagaagaaaaaggattctgctagtccgtggtgagtaatcgcggTCCTGATGTCttgaagttattttcggtcataagagacaGGTTGAATTCCAAAACAGGAAAAATCAACAGCTTTTCTCAGACAAAAAGGGGACCTTTGGAAAAAATTATTGGGTGTTCAACACAGAAACAAAGTCAAGAACACAAAGGGGAAGCAAGGAATTTTGGATAACAAAGTTGACAAAAGCAACAGCAAAATCAAAAAGGAAATGGCAGTTTTGAGTAAAATTTGCTCCTTTCACAGATGTATTTAATGATGGGCTAGTTAATCTGCAGAAGCAGCAGTTACAAACGTGAATCCAGGTATTATATAATCTATTAATGACATTTCAAAGCTAAATCAGCAAAAACAATAATTGCTCTCCACACTTTTGCTCATGACTACAGCTCATAAATACAATCGATCAGATAAATATTTGGATAGATTAATGACATTTAAAAATGGTAGTCAAATGACACCATgactattccctataaagtgcatgcactacttttgacctgagccacctagttgtgcactatataggaaatagggtgtcatctGTGACTTGACCGATATagtcctggggcctcatttataactgTTCACACATTTCCGCATGACACATTTCTGAAAATCCAGAGGGAGTACAAAAATATTTAGATTCATACATTTGGTGCACATTAAAACTCTGCCTGGAAAACACCTCCAAATGTTATGGTGACAATAACACACTATTTGCTGTATAATTTTGAATTAGGCCATGGCAGTATCTAAAATGGGCAATTGCAATTTTGATCACATTTCTGTGGGCAGAATGTTTTGGAAGTTATTCAAACTAAACATGCATATAGCGAGCGCCTGATGTCTGCAAGGTTGATTGTAGCCTATATTTTGAAACACTTTAAAAGTAGGCTAAATGCTACAGCCCACACTAAAGTGCAAAATAGAAATGGTTCAATATTTTGTTTTTCAATAGATAGAAACAATGTCCTGCCTTAGTATAGGGTCTGATTTAAATTGGCAATGTTGTGCTTCTCTCACAGCAATACAATAGCTTACCTATACACAAATATTTTACATAAACTACTGTGTTGGCAGAATGTTCCAATACAGTTTATGAAAGAGAAAACAAATGGCAGATTGTGGACCTGTCAGCAGAACGTTTAAATTCAACAATGTTTTGCATCGACTTTTCACCTAAATATGATGGGACTGGCCGTGAATTTTGAAAAATTGTCTAAGGCAGGCTACCAGTAGCATACATAGGTCTACTTCAATGTAAAAGAAACTTCACCTTTTAAATTTGACTGTAGGCTAGATTATGGGATTGCACAATTTAATACAGCCCATCTATTTACTAGGCTCCTAGgtccaattaaatgagagatgcACATGCTAATTTGTTGTATGAATATGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603215.2 False 1987 mRNA 0.42 7 48424865 48447883
XM_021603214.2 False 1969 mRNA 0.42 7 48424865 48447888
TU463759 True 1756 lncRNA 0.37 2 48423554 48489102

Neighbor

gene id symbol gene type direction distance location
nup54 nup54 coding downstream 299187 48106327 ~ 48125678 (-)
LOC110523978 LOC106605670 coding downstream 395189 48027781 ~ 48029676 (-)
LOC110523975 NA coding downstream 514620 47826801 ~ 47910245 (-)
LOC118964754 NA coding downstream 729183 47695630 ~ 47695682 (-)
LOC110523973 ctif coding downstream 762195 47530422 ~ 47662670 (-)
pdcl pdcl coding upstream 92194 48540082 ~ 48544432 (-)
pdxp plpp coding upstream 126862 48574750 ~ 48580663 (-)
mier3a LOC105008092 coding upstream 199018 48646906 ~ 48693022 (-)
LOC110523989 LOC106560554 coding upstream 282095 48729983 ~ 48847550 (-)
notch1 notch1 coding upstream 433505 48881393 ~ 48954869 (-)
G408826 sec16a non-coding downstream 9131 48415341 ~ 48415734 (-)
G408825 NA non-coding downstream 9608 48414975 ~ 48415257 (-)
G408823 NA non-coding downstream 10880 48413254 ~ 48413985 (-)
G408824 NA non-coding downstream 12720 48411664 ~ 48412145 (-)
G408821 NA non-coding downstream 23386 48401165 ~ 48401479 (-)
G408855 rl28 non-coding upstream 33910 48481798 ~ 48484591 (-)
G408873 NA non-coding upstream 61649 48509537 ~ 48509835 (-)
G408875 NA non-coding upstream 65732 48513620 ~ 48513830 (-)
G408856 NA non-coding upstream 84534 48532422 ~ 48537040 (-)
G408891 NA non-coding upstream 97181 48545069 ~ 48545365 (-)
G408782 sec16a other downstream 67300 48353302 ~ 48357565 (-)
G408664 NA other downstream 201645 48221952 ~ 48223220 (-)
LOC110523962 LOC106561388 other downstream 1814750 46572673 ~ 46610314 (-)
G406588 NA other downstream 2190328 46219667 ~ 46234537 (-)
LOC110523950 LOC106561514 other downstream 2401025 46019698 ~ 46023840 (-)
G410168 NA other upstream 1086028 49533916 ~ 49576456 (-)
G411459 NA other upstream 2171003 50618891 ~ 50619175 (-)
G411929 NA other upstream 2274426 50722314 ~ 50723061 (-)
G411930 NA other upstream 2275271 50723159 ~ 50724077 (-)
LOC110524003 LOC106613485 other upstream 2731870 51179758 ~ 51228505 (-)
G408894 NA non-coding upstream 63122 48552224 ~ 48552468 (-)

Expression


Co-expression Network