pdcl (pdcl)


Basic Information

Item Value
gene id pdcl
gene name pdcl
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 48540082 ~ 48544432 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603219.2
gtaacggttttgacttgctTGTAGGGGTGCCAGGTAGATTGTGACTACCAGAAAAAAATATTGATTTCTCCTTTTAGTTTGGGAGGGAAttagtttttttatatatatctaAAAAATATGtgacctttaactaggcaagtcagttaactaccccagccaaacccttaccggacgacgctgggccaagaGTGATCGAAATAACGTGTTTCACCAAAGTTGGTTTCTTAGCGTTCATTgccatggttatcaactgtaccgcaGAAATGGAACATAAATCACAGGAAATAGATATTGTGGTGGCAGctggttttaatgggtgtagggctAGCTGGTAGGACAATTTCTTCCCTTTTCCCCGTACTTTTTTTGTCACAAAATGTAATGAATTCACTCTTCAGAGCAGGAACCGGAAAAATGGCTTGATAGGAGAAATTACCGACCTTACACTCCattacagtaggtggcggtgtatgCACCTTGATGTTGGTTGCGATTCGGCAACACAAatttgaagaagaagaaaacggATAATGTTTTTGGCTTTGTCAACGCTGCGCTAGGGAAGTAGGATTCGAAACAGTTGTTGATACAATCAAGTTAGGTGTGAAGTCATGACAACGTTGGATGACAAGATCCTGGGGGAGAAGCTGCAGTACTACTACAGCAGCAGTGAGGATGAGGAAAGTGACAAGGAGGATGACGAGGGGGAGCACAAGACCATCCGCAACCCAGATGTACTGGAGCCTGAGCTAGAATACAGCGCTGACGGTAGTGCCATcaacacagGGCCCAAGGGGGTGATTAATGACTGGAGGAAGTACAAACAGCTGAAGGTGGAGCAGAAGCAGGAGcagaaggaggagatggagagactcATCAAGAAGCTGTCCATGACCTGTCGCTCCGACCTGGACGACGAAGCCGACGCCATTAAACAGAAAGAGATGCAGGACAAGATCCAACACAAGATGACCATGCAGGAGTACAACATGCTCCAGGAAGACGAGGATGACGAGGACTTCCTCCAGCAGTACAGGAAGCAGCGCATCGAGGAGATGCGCCGGAAGGTGTTGCGCGGTAAGCGCTTCGAGCAGGTCTACGAGCTCAACAGTGGCGAGGAGTTCCTGGAGGCTGTGGACAAGGAGGACAAGGCCTGCCTGGTTATGATCCACATCTACGAGGGCGAGGTGCCTGCCTGCGAGGCAATGATGGGCAGCCTGCTGTGCCTGGCACAGGAATACCCCCTGGTCAAGTTCTGTAGCGTGCGTGGGTCGGTTATCGGCACCAGTGCCCAGTTCAGGGGCAGCGCCTTGCCAGCCCTGCTGGTGTACAAAGGAGGAGACCTGATTGGGAACTTTGTGCGCATCACAGACCAGCTAGGAGAGGACTTCTATGCTGTGGATGTGGAGGCGCTGCTGCAAGAGTACGGGCTGCTGCCGGACAAAACTGTCCTTGTCGCTAAGACCATCCGCAACGGCGCCATCACACAGAGCGATGACTCTGACCTTGACATAGACTAGAGAACAGACCTGCACATATATAGAAACATAGACTAGAACCTCTATGTGTACACACACTCGACATAGACTAGAACCCCaatgtgtaaacacacacacacagtcgacagactagaacccctatgtacacacacacagtcgacagactagaacccctatgtacacacacacacagtcgacagactagaacccctacgtacacacacacaca
>XM_021603220.2
gtaacggttttgacttgctTGTAGGGGTGCCAGGTAGATTGTGACTACCAGAAAAAAATATTGATTTCTCCTTTTAGTTTGGGAGGGAAttagtttttttatatatatctaAAAAATATGtgacctttaactaggcaagtcagttaactaccccagccaaacccttaccggacgacgctgggccaagaGTGATCGAAATAACGTGTTTCACCAAAGTTGGTTTCTTAGCGTTCATTgccatggttatcaactgtaccgcaGAAATGGAACATAAATCACAGGAAATAGATATTGTGGTGGCAGctggttttaatgggtgtagggctAGCTGGTAGGACAATTTCTTCCCTTTTCCCCGTACTTTTTTTGTCACAAAATGTAATGAATTCACTCTTCAGAGCAGGAACCGGAAAAATGGCTTGATAGGAGAAATTACCGACCTTACACTCCattacagtaggtggcggtgtatgCACCTTGATGTTGGTTGCGATTCGGCAACACAAatttgaagaagaagaaaacggATAATGTTTTTGGCTTTGTCAACGCTGCGCTAGGGAAGTAGGATTCGAAACAGTTGTTGATACAATCAAGGTGTGAAGTCATGACAACGTTGGATGACAAGATCCTGGGGGAGAAGCTGCAGTACTACTACAGCAGCAGTGAGGATGAGGAAAGTGACAAGGAGGATGACGAGGGGGAGCACAAGACCATCCGCAACCCAGATGTACTGGAGCCTGAGCTAGAATACAGCGCTGACGGTAGTGCCATcaacacagGGCCCAAGGGGGTGATTAATGACTGGAGGAAGTACAAACAGCTGAAGGTGGAGCAGAAGCAGGAGcagaaggaggagatggagagactcATCAAGAAGCTGTCCATGACCTGTCGCTCCGACCTGGACGACGAAGCCGACGCCATTAAACAGAAAGAGATGCAGGACAAGATCCAACACAAGATGACCATGCAGGAGTACAACATGCTCCAGGAAGACGAGGATGACGAGGACTTCCTCCAGCAGTACAGGAAGCAGCGCATCGAGGAGATGCGCCGGAAGGTGTTGCGCGGTAAGCGCTTCGAGCAGGTCTACGAGCTCAACAGTGGCGAGGAGTTCCTGGAGGCTGTGGACAAGGAGGACAAGGCCTGCCTGGTTATGATCCACATCTACGAGGGCGAGGTGCCTGCCTGCGAGGCAATGATGGGCAGCCTGCTGTGCCTGGCACAGGAATACCCCCTGGTCAAGTTCTGTAGCGTGCGTGGGTCGGTTATCGGCACCAGTGCCCAGTTCAGGGGCAGCGCCTTGCCAGCCCTGCTGGTGTACAAAGGAGGAGACCTGATTGGGAACTTTGTGCGCATCACAGACCAGCTAGGAGAGGACTTCTATGCTGTGGATGTGGAGGCGCTGCTGCAAGAGTACGGGCTGCTGCCGGACAAAACTGTCCTTGTCGCTAAGACCATCCGCAACGGCGCCATCACACAGAGCGATGACTCTGACCTTGACATAGACTAGAGAACAGACCTGCACATATATAGAAACATAGACTAGAACCTCTATGTGTACACACACTCGACATAGACTAGAACCCCaatgtgtaaacacacacacacagtcgacagactagaacccctatgtacacacacacagtcgacagactagaacccctatgtacacacacacacagtcgacagactagaacccctacgtacacacacacaca
>XM_021603221.2
CCTATCTCCCCCTTTCTCTAATATCTCTGGCAGAGCAGCCCAGGCAGATCCATTGCTAAATGTTGCTATCGATACTCAGACTCACAGCCACCATGAGTAGAGTCTATGCAGAGGGAGCTGCCTGCACACAGGGAGCGATcgaatgacagacagagaggagcagcTAATGGGTTTACTAACAAAGGAAGCTATTTCTGATTTCCGGTTTCGGCCAGGCCTTACATTTGGTTGAAGCAATCAGTTAGGTGTGAAGTCATGACAACGTTGGATGACAAGATCCTGGGGGAGAAGCTGCAGTACTACTACAGCAGCAGTGAGGATGAGGAAAGTGACAAGGAGGATGACGAGGGGGAGCACAAGACCATCCGCAACCCAGATGTACTGGAGCCTGAGCTAGAATACAGCGCTGACGGTAGTGCCATcaacacagGGCCCAAGGGGGTGATTAATGACTGGAGGAAGTACAAACAGCTGAAGGTGGAGCAGAAGCAGGAGcagaaggaggagatggagagactcATCAAGAAGCTGTCCATGACCTGTCGCTCCGACCTGGACGACGAAGCCGACGCCATTAAACAGAAAGAGATGCAGGACAAGATCCAACACAAGATGACCATGCAGGAGTACAACATGCTCCAGGAAGACGAGGATGACGAGGACTTCCTCCAGCAGTACAGGAAGCAGCGCATCGAGGAGATGCGCCGGAAGGTGTTGCGCGGTAAGCGCTTCGAGCAGGTCTACGAGCTCAACAGTGGCGAGGAGTTCCTGGAGGCTGTGGACAAGGAGGACAAGGCCTGCCTGGTTATGATCCACATCTACGAGGGCGAGGTGCCTGCCTGCGAGGCAATGATGGGCAGCCTGCTGTGCCTGGCACAGGAATACCCCCTGGTCAAGTTCTGTAGCGTGCGTGGGTCGGTTATCGGCACCAGTGCCCAGTTCAGGGGCAGCGCCTTGCCAGCCCTGCTGGTGTACAAAGGAGGAGACCTGATTGGGAACTTTGTGCGCATCACAGACCAGCTAGGAGAGGACTTCTATGCTGTGGATGTGGAGGCGCTGCTGCAAGAGTACGGGCTGCTGCCGGACAAAACTGTCCTTGTCGCTAAGACCATCCGCAACGGCGCCATCACACAGAGCGATGACTCTGACCTTGACATAGACTAGAGAACAGACCTGCACATATATAGAAACATAGACTAGAACCTCTATGTGTACACACACTCGACATAGACTAGAACCCCaatgtgtaaacacacacacacagtcgacagactagaacccctatgtacacacacacagtcgacagactagaacccctatgtacacacacacacagtcgacagactagaacccctacgtacacacacacaca
>XM_036977745.1
CCTATCTCCCCCTTTCTCTAATATCTCTGGCAGAGCAGCCCAGGCAGATCCATTGCTAAATGTTGCTATCGATACTCAGACTCACAGCCACCATGAGTAGAGTCTATGCAGAGGGAGCTGCCTGCACACAGGGAGCGATcgaatgacagacagagaggagcagcTAATGGGTTTACTAACAAAGGAAGCTATTTCTGATTTCCGGTTTCGGCCAGGCCTTACATTTGGTTGAAGCAATCAGGTGTGAAGTCATGACAACGTTGGATGACAAGATCCTGGGGGAGAAGCTGCAGTACTACTACAGCAGCAGTGAGGATGAGGAAAGTGACAAGGAGGATGACGAGGGGGAGCACAAGACCATCCGCAACCCAGATGTACTGGAGCCTGAGCTAGAATACAGCGCTGACGGTAGTGCCATcaacacagGGCCCAAGGGGGTGATTAATGACTGGAGGAAGTACAAACAGCTGAAGGTGGAGCAGAAGCAGGAGcagaaggaggagatggagagactcATCAAGAAGCTGTCCATGACCTGTCGCTCCGACCTGGACGACGAAGCCGACGCCATTAAACAGAAAGAGATGCAGGACAAGATCCAACACAAGATGACCATGCAGGAGTACAACATGCTCCAGGAAGACGAGGATGACGAGGACTTCCTCCAGCAGTACAGGAAGCAGCGCATCGAGGAGATGCGCCGGAAGGTGTTGCGCGGTAAGCGCTTCGAGCAGGTCTACGAGCTCAACAGTGGCGAGGAGTTCCTGGAGGCTGTGGACAAGGAGGACAAGGCCTGCCTGGTTATGATCCACATCTACGAGGGCGAGGTGCCTGCCTGCGAGGCAATGATGGGCAGCCTGCTGTGCCTGGCACAGGAATACCCCCTGGTCAAGTTCTGTAGCGTGCGTGGGTCGGTTATCGGCACCAGTGCCCAGTTCAGGGGCAGCGCCTTGCCAGCCCTGCTGGTGTACAAAGGAGGAGACCTGATTGGGAACTTTGTGCGCATCACAGACCAGCTAGGAGAGGACTTCTATGCTGTGGATGTGGAGGCGCTGCTGCAAGAGTACGGGCTGCTGCCGGACAAAACTGTCCTTGTCGCTAAGACCATCCGCAACGGCGCCATCACACAGAGCGATGACTCTGACCTTGACATAGACTAGAGAACAGACCTGCACATATATAGAAACATAGACTAGAACCTCTATGTGTACACACACTCGACATAGACTAGAACCCCaatgtgtaaacacacacacacagtcgacagactagaacccctatgtacacacacacagtcgacagactagaacccctatgtacacacacacacagtcgacagactagaacccctacgtacacacacacaca

Function

symbol description
pdcl Predicted to act upstream of or within regulation of G protein-coupled receptor signaling pathway and visual perception. Is expressed in central nervous system; olfactory placode; and trigeminal placode. Orthologous to human PDCL (phosducin like).

NR:

description
phosducin-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603219.2 False 1728 mRNA 0.50 4 48540082 48544179
XM_021603220.2 False 1724 mRNA 0.50 4 48540082 48544179
XM_021603221.2 False 1372 mRNA 0.53 4 48540082 48544432
XM_036977745.1 True 1368 mRNA 0.53 4 48540082 48544432

Neighbor

gene id symbol gene type direction distance location
LOC110523983 LOC106560666 coding downstream 92194 48423554 ~ 48489102 (-)
nup54 nup54 coding downstream 414404 48106327 ~ 48125678 (-)
LOC110523978 LOC106605670 coding downstream 510406 48027781 ~ 48029676 (-)
LOC110523975 NA coding downstream 629837 47826801 ~ 47910245 (-)
LOC118964754 NA coding downstream 844400 47695630 ~ 47695682 (-)
pdxp plpp coding upstream 30318 48574750 ~ 48580663 (-)
mier3a LOC105008092 coding upstream 102474 48646906 ~ 48693022 (-)
LOC110523989 LOC106560554 coding upstream 185551 48729983 ~ 48847550 (-)
notch1 notch1 coding upstream 336961 48881393 ~ 48954869 (-)
col27a1a LOC106560409 coding upstream 544103 49088535 ~ 49370988 (-)
G408856 NA non-coding downstream 3042 48532422 ~ 48537040 (-)
G408875 NA non-coding downstream 26252 48513620 ~ 48513830 (-)
G408873 NA non-coding downstream 30247 48509537 ~ 48509835 (-)
G408855 rl28 non-coding downstream 55491 48481798 ~ 48484591 (-)
G408891 NA non-coding upstream 637 48545069 ~ 48545365 (-)
G408894 NA non-coding upstream 7792 48552224 ~ 48552468 (-)
G408895 NA non-coding upstream 8455 48552887 ~ 48553199 (-)
G408912 NA non-coding upstream 40995 48585427 ~ 48585672 (-)
G408914 NA non-coding upstream 42090 48586522 ~ 48586734 (-)
G408782 sec16a other downstream 182517 48353302 ~ 48357565 (-)
G408664 NA other downstream 316862 48221952 ~ 48223220 (-)
LOC110523962 LOC106561388 other downstream 1929967 46572673 ~ 46610314 (-)
G406588 NA other downstream 2305545 46219667 ~ 46234537 (-)
LOC110523950 LOC106561514 other downstream 2516242 46019698 ~ 46023840 (-)
G410168 NA other upstream 989484 49533916 ~ 49576456 (-)
G411459 NA other upstream 2074459 50618891 ~ 50619175 (-)
G411929 NA other upstream 2177882 50722314 ~ 50723061 (-)
G411930 NA other upstream 2178727 50723159 ~ 50724077 (-)
LOC110524003 LOC106613485 other upstream 2635326 51179758 ~ 51228505 (-)

Expression


Co-expression Network