LOC110523996 (hcn1)


Basic Information

Item Value
gene id LOC110523996
gene name hcn1
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 49889400 ~ 50073258 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603242.2
ATGGAAGAAAAATCGAATTCGTTTTCCAGCAAAAAAGAAGTGGAAAAAGCAGATGGGAATAATATATTTCAGAGTCAAGACTCGATACAGAAGAAGAATATGGGGAGCCAGAGCATGAAATCAGGGGACCACCCGAACTCGGTGGGCTTCAAGGGTGACCAGGAGGAAGCCTTGGTCGGGTTCGACGATCTAGACGGGTCCGGGAACCGACACGGCTTTATGCAGAGGCAATTTGGAGCGATGATGCAGCCTGGCGTCAATAAGTTCTCCCTGCGAATGTTCGGCAGTCAGAAAGCCGTTGAGAAAGAGCAAGAAAGGGTCAAAACTGCGGGATACTGGATCATTCACCCCTATAGCGATTTTAGGTTCTACTGGGACTTGGTAATGCTGGTCATGATGATGGGGAACCTGATCATCATTCCTGTAGGAATAACCTTCTTCTCGGAGCAGACCACCACCACCTGGCTAATATTCAACGTAGCATCAGACACAATCTTCCTCGTGGATCTGGTCATGAACTTTCGCACTGGAATCGTCAACGAGGAGAGCTCCGAGATCATCCTGGACCCCAAGGTCATCAAGATGAACTACCTGAAGAGCTGGTTTGTGGTTGACTTCCTCTCGTCCATACCAGTGGATTATATATTTCTAATAGTGGAAAAGGGGTTTGACTCAGAGGTGTACAAGACGGCGAGGGCGCTGAGGATCGTTAGGTTTACTAAGATTCTGTCACTTCTGAGGTTGCTGAGACTTTCCCGACTCATCAGATACATACATCAGTGGGAAGAGATCTTCCATATGACCTACGACCTGGCCAGTGCTGTGGTAAGAATATTTAATCTGATAGGGATGATGCTACTGCTCTGCCACTGGGATGGTTGCCTACAGTTCCTGGTTCCCCTCCTACAAGATTTCCCCCAAGATTGCTGGGTGTCGCTAAATGGTATGGTTAATGACTCGTGGGGTAAGCAGTACTCGTACGCTCTCTTTAAGGCCATGAGCCACATGCTGTGTATCGGGTACGGCGCCCGGGCGCCTGTCAGCATGTCCGACCTGTGGATCACCATGCTCAGTATGATTGTGGGCGCCACCTGCTACGCCATGTTCGTCGGCCACGCCACCGCTCTCATCCAATCACTGGACTCGTCCCGCAGGCAGTACCAAGAGAAGTACAAACAAGTGGAGCAGTACATGTCATTCCACAAGCTACCTGCAGACATGCGGCAGAAGATCCATGATTACTATGAGCATCGCTATCAAGGCAAGATCTTTGACGAGGACAATATCCTGAGTGAGCTCAACGACCCTCTCAAAGAGgaAATTGTGAACTTCAACTGCCGGAAGCTTGTGGCTACCATGCCACTGTTCGCCAACGCAGACCCCAACTTCGTGACGGGCATGTTGAGCAAGCTGAAGTTCGAGGTGTTCCAACCCAACGATTACATCATCAGAGAGGGTACCGTGGGCAAGAAGATGTACTTCATCCAACATGGTGTGGCCAGTGTTATCACCAAGCTCAACAAAGAGATGAAGCTGACTGACGGCTCCTACTTTGGAGAAATTTGTCTGCTGACGAAGGGGAGACGCACGGCCAGCGTTCGTGCCGACACTTACTGccgtctcttctccctctctgtggaTCACTTCAACGAGGTGTTGGAGGAGTACCCCATGATGCGCCGTGCCTTCGAGACTGTAGCCATCGACCGCCTGGACCGCATCGGAAAGAAGAACAGCCTACTCCTCCAGAAGTTCCAGAAGGACCTGAACGCTGGGGTATTCAACACACAGGAGAACGAGATATTGAGGCACATAATCCATCAGGACAGGgagatggtgatgatggtggaccGCAAGCAGTCGGTCACAGGGATGTCGGTCACCGGGATGAATTCAACCCCGATATCTGGAAATTCCATGATTAACTCTCCTGCTCAGCAGACCTACACCACTGCCCTGGGCACCAACCAGTTTCAGCAGTCATCCGCCCATTTAACATGCAGTGCTTCGGGCGTCATTGCTCCCTCTGCCGCAGCCACCGCCCGCATCCTGCCAGCCTCGACGCAGGGTGTCTACCCTGTCCCCAGTGTCTCCCACAGCAGCCTGAACTCATCCTCGCCTGTACCccagacccccctctctctccagcagcaAGGAGCTATCATGTCCCCAGTATCCTGCAACACGGCTGTGTGCAGTCCACCTGTGCAGACCCCTGGGCTGGCGGGACGCAGCTTCCAGTATGGCTCGCCCACCACCTCCCAGCTCTCCCTTTTCCAGCAGCCGCTGCCTACTGCCCTACCACCCCAACAACCACTACCACAGCTGCCCCAGAAAACAGGAGGAGCTGCAGCCTCCTTGgcaacacaacaaccacagcagcagcagcagcagcagcagccaacaCAGCAGCAAGTCCCTTCACCTCAGAGGAGTGACATTCTCCACAAGGGCAGCCATACTCTCCAGTCTGGAAGCCTGAGTCAAGGTGTACGCCACCTATCTGCCTCCCAACCCTCCCTGCCACATGACACATCCCTGGGGCCCAGAGCGCACCCTGGAGTGTCCGGGGACTTCCTGTCCTCCATCGCCCTGCCGGTGGCTGCGGTCCAGGGGCCAGGTATGCAGAGCGGTCTCCGCACCACAGCGCCCCAGAGGGTCAACCTGTTCTGCCAGATGTCATCGGGAGCATTGCCCCCGGTGCGAGCGGCGTCCTCTACAGCCCAGCACAGGGATTCCACAGGTTCTAGAAAAGATTCTAGAAGGGATTCTAACTTAAGCAGTACAGAGACTGACCAAGATAAGATGCGGTTCGCATCAAATTTATGATCCCATTTGACTTTTTTAAACTTCTGTTTGAATTCACTTTTAATGGAGATACAAGAAATGATAGACAAATTTCTTCTGAAAAAATAACCTCATAGAATTCCTGTACAGACTACCCTTGTATTATATTTTAGACACATTTTCTTCCTAAACTTAAGAATGtatattaaacaaatatatatcaaTATTTGTAAATCCAACTAGAATATTTGGCAAAGACTATTTAAAAGCTCTAGTATATAAAACATGAGTATTCCTTTCcgaaaaatataaatatacaatgtatggatatttttttttggggggggggggggggttgtttgtttgttcttttctgtttttgtaaactggaATGCGTCGTGATGAATCCtgagtatttatatttttggttttgtACCTGCGAAAAGAGGAACAAATATCATCTCATACTACGCAGCTTTGTCACCACTGTGGAATAACTGACGCAAGCGAACCTTGAAACTGTCAAAAA
>TU465576
GTGGAGCCGAGCAGTTGAATGACATCAAATGAAACACGGGAGTTTACAGCGAGTCCTTTTGAGTTTTGCGCGTAGCTTGTCTTCCCAGCCAGGAGACAGTACGTTTTATTGAAAATCATGGAAGAAAAATCGAATTCGTTTTCCAGCAAAAAAGAAGTGGAAAAAGCAGATGGGAATAATATATTTCAGAGTCAAGACTCGATACAGAAGAAGAATATGGGGAGCCAGAGCATGAAATCAGGGGACCACCCGAACTCGGTGGGCTTCAAGGGTGACCAGGAGGAAGCCTTGGTCGGGTTCGACGATCTAGACGGGTCCGGGAACCGACACGGCTTTATGCAGAGGCAATTTGGAGCGATGATGCAGCCTGGCGTCAATAAGTTCTCCCTGCGAATGTTCGGCAGTCAGAAAGCCGTTGAGAAAGAGCAAGAAAGGGTCAAAACTGCGGGATACTGGATCATTCACCCCTATAGCGATTTTAGGTTCTACTGGGACTTGGTAATGCTGGTCATGATGATGGGGAACCTGATCATCATTCCTGTAGGAATAACCTTCTTCTCGGAGCAGACCACCACCACCTGGCTAATATTCAACGTAGCATCAGACACAATCTTCCTCGTGGATCTGGTCATGAACTTTCGCACTGGAATCGTCAACGAGGAGAGCTCC

Function

symbol description
hcn1 Predicted to enable cAMP binding activity; sodium channel activity; and voltage-gated potassium channel activity. Acts upstream of or within neuron-neuron synaptic transmission and posterior lateral line neuromast hair cell development. Predicted to be located in membrane. Predicted to be integral component of plasma membrane. Is expressed in neuromast hair cell.

NR:

description
potassium/sodium hyperpolarization-activated cyclic nucleotide-gated channel 1-like

GO:

id name namespace
GO:0071805 potassium ion transmembrane transport biological_process
GO:0034765 regulation of ion transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005249 voltage-gated potassium channel activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603242.2 False 3316 mRNA 0.50 8 49889517 50073258
TU465576 True 669 TUCP 0.48 2 49889400 49923598

Neighbor

gene id symbol gene type direction distance location
LOC110522958 LOC106560427 coding upstream 146687 49736646 ~ 49742830 (+)
LOC110523995 LOC106560436 coding upstream 156972 49694223 ~ 49732545 (+)
LOC110522957 LOC106613948 coding upstream 366064 49521853 ~ 49523453 (+)
psmd5 psmd5 coding upstream 375072 49502161 ~ 49514445 (+)
setd9 setd9 coding upstream 1247849 48609741 ~ 48641668 (+)
nr5a2 LOC106613481 coding downstream 655844 50729102 ~ 50825399 (+)
camsap2a camsap2 coding downstream 986576 51059834 ~ 51153381 (+)
LOC110524004 LOC106613487 coding downstream 1210278 51283536 ~ 51291754 (+)
LOC118964752 NA coding downstream 1322319 51395577 ~ 51395631 (+)
LOC110524007 LOC106613489 coding downstream 1346172 51419430 ~ 51435491 (+)
G410343 NA non-coding upstream 149246 49740009 ~ 49740271 (+)
G409838 NA non-coding upstream 240664 49648441 ~ 49648853 (+)
G409697 NA non-coding upstream 313087 49375269 ~ 49576430 (+)
G409792 NA non-coding upstream 344848 49544087 ~ 49544669 (+)
G409734 NA non-coding upstream 453670 49428331 ~ 49435847 (+)
G410496 NA non-coding downstream 2194 50075452 ~ 50077843 (+)
G410808 NA non-coding downstream 30254 50103512 ~ 50104208 (+)
G410886 NA non-coding downstream 113566 50186824 ~ 50187035 (+)
G410911 NA non-coding downstream 132144 50205402 ~ 50205617 (+)
G410913 NA non-coding downstream 133863 50207121 ~ 50207339 (+)
G409191 NA other upstream 907746 48948138 ~ 48981771 (+)
LOC110523980 LOC106560682 other upstream 1725630 48149869 ~ 48221948 (+)
G408222 NA other upstream 1850424 48036626 ~ 48039093 (+)
G408177 NA other upstream 2062042 47821590 ~ 47827475 (+)
G411519 NA other downstream 589614 50662872 ~ 50663640 (+)
G412859 NA other downstream 1728992 51802250 ~ 51802820 (+)
G414007 NA other downstream 2688131 52761389 ~ 52761729 (+)
G414041 NA other downstream 2705259 52778517 ~ 52779479 (+)
G410556 NA non-coding downstream 41883 49965481 ~ 49965926 (+)
G410561 NA non-coding downstream 49353 49972951 ~ 49973288 (+)
G410564 NA non-coding downstream 51489 49975087 ~ 49976601 (+)
G410593 NA non-coding downstream 83314 50006912 ~ 50007139 (+)
G410598 NA non-coding downstream 91211 50014809 ~ 50015087 (+)

Expression


Co-expression Network