LOC110524017 (ftsj3)


Basic Information

Item Value
gene id LOC110524017
gene name ftsj3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 52230095 ~ 52235296 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603299.2
ACACGTGTTCCGTTTTAATGAAGGTGGTTGACGATATGCGTCAGTCATATGTAAATCATATTATTCCAAAGGAAACGCACAATTTTCGTCTTAAGTGATCAACAACGCCAGCAAACTTGGGGAACAAACTCAAAGTTGGAAAGACCAGAAAATATCATTTCCACCACTTAGCAAAGGAAACAGGATATCGTTCACGTTCTTCCTTTAAACTTATTCAGTTGAACCATAAATTCCAGTTCCTGCAGAAGTCCAGGGCTCTTGTGGACTTGTGTGCAGCTCCAGGTGGTTGGTGTCGACTTGGTCCCAATCGAGGCTATTCCCAATGTGGTCGCTCTGACAGAGGACATCACCACAGAGTAATGCCGACAGATAGCATAAGCACCTAAGGTCAGAGGTCAAATGAGTGTCAGTGTGTTACTTGACCATACAGGATTGCGGTTTAAATTTTAAATACTACAAGATTCTGGCAATAACGTTGTGGCCAAGAAGGGCTCCGGAACCAAGCTGTGCGGCGTCAAGGGGAAGTTCAAAGTGGTGGACTGCCGCATGAAGAAGGACATGCGGGGCATGCAGAGGAAAGATCAACGCGAGAGAGGGGGCaaaaagtttGTGAGTTCGGAGGACCAGTGCGAGGTGCTTGAGTGGTTTGTGGATGACGAGAAAAAACACAGGAATAAGCCCATCCTCGTCACcaaggagatggtggaggagaaCAAGGCAAAATGGAAGGAGATCAACGCCAGGCCCATTAAGCGAGTGGCCGAGGCTAAGGCCAGGAAGAAGAGCAGGATGCTGAAGAAGATGGAATCAGCCAAGAAGAAGGCAGAGGCGGTTGTCAGCACAGTGGACATCGGTGAAAGGGAGAAGATGGCTCATCTCAAGAGGTACTGCCATTTTAAAGAGCTTAAAAGACCTCAAGCGGTACTCCATTTTAAAGAGCTCAAGAGGTACGACCGCCACCATAAAAACCACATGCACCATAAACATTTTACACTCCTACATCTGTGGCAACGACATGTACCATCaccaacttttactttactatacCTGTGGCAGCCAGCTACATCTCCTCTGGCAGTGGCATGTACCACCACCATTTTACATTAGCAAGTGAAGTTCATCCTCtctccgggctctggctgggcaactcaagggcattcaaagacttgtcctgaagccactcttgcattgttttggctgtttGCCTAgtttcgttgtcctgttggaaggtgaaccttcctgagaacctgctccagagcactcaggaccccattaaggatctctctgtactttgctctgttcatctttccctcgatactGACTAGTTTACCATGCCCTGCcagtgaaaaacatccccacagcatgattctgccaataccatgcttcaccttagggatggtgccaggtttcctccaggcgtggtGCTTGGCata
>XM_021603298.2
CGTGTTCCGTTTTAATGAAGGTGGTTGACGATATGCGTCAGTCATATGTAAATCATATTATTCCAAAGGAAACGCACAATTTTCGTCTTAAGTGATCAACAACGCCAGCAAACTTGGGGAACAAACTCAAAGTTGGAAAGACCAGAAAATATCATTTCCACCACTTAGCAAAGGAAACAGGATATCGTTCACGTTCTTCCTTTAAACTTATTCAGTTGAACCATAAATTCCAGTTCCTGCAGAAGTCCAGGGCTCTTGTGGACTTGTGTGCAGCTCCAGGTGGTTGGTGTCGACTTGGTCCCAATCGAGGCTATTCCCAATGTGGTCGCTCTGACAGAGGACATCACCACAGAGTAATGCCGACAGATAGCATAAGCACCTAAGGTCAGAGGTCAAATGAGTGTCAGTGTGTTACTTGACCATACAGGATTGCGGTTTAAATTTTAAATACTACAAGATTCTGGCAATAACGTTGTGGCCAAGAAGGGCTCCGGAACCAAGCTGTGCGGCGTCAAGGGGAAGTTCAAAGTGGTGGACTGCCGCATGAAGAAGGACATGCGGGGCATGCAGAGGAAAGATCAACGCGAGAGAGGGGGCaaaaaGCAAGCGTGTTTGCGTCATGAATTCAGAGGGTATGGCCCTGGGCTGTCAGATCGCCACGTCCAAGAAGCGAGAGAGGGACCTGGTAGATGGCTCCTTTCACAGgtttGTGAGTTCGGAGGACCAGTGCGAGGTGCTTGAGTGGTTTGTGGATGACGAGAAAAAACACAGGAATAAGCCCATCCTCGTCACcaaggagatggtggaggagaaCAAGGCAAAATGGAAGGAGATCAACGCCAGGCCCATTAAGCGAGTGGCCGAGGCTAAGGCCAGGAAGAAGAGCAGGATGCTGAAGAAGATGGAATCAGCCAAGAAGAAGGCAGAGGCGGTTGTCAGCACAGTGGACATCGGTGAAAGGGAGAAGATGGCTCATCTCAAGAGGTACTGCCATTTTAAAGAGCTTAAAAGACCTCAAGCGGTACTCCATTTTAAAGAGCTCAAGAGGTACGACCGCCACCATAAAAACCACATGCACCATAAACATTTTACACTCCTACATCTGTGGCAACGACATGTACCATCaccaacttttactttactatacCTGTGGCAGCCAGCTACATCTCCTCTGGCAGTGGCATGTACCACCACCATTTTACATTAGCAAGTGAAGTTCATCCTCtctccgggctctggctgggcaactcaagggcattcaaagacttgtcctgaagccactcttgcattgttttggctgtttGCCTAgtttcgttgtcctgttggaaggtgaaccttcctgagaacctgctccagagcactcaggaccccattaaggatctctctgtactttgctctgttcatctttccctcgatactGACTAGTTTACCATGCCCTGCcagtgaaaaacatccccacagcatgattctgccaataccatgcttcaccttagggatggtgccaggtttcctccaggcgtggtGCTTGGCata
>XM_036977778.1
TATGCACTTTACGTGTGGTCTACAGGAGCTTCGCTCAGATGTAGAAGGCTAAAGGGTCAGGCGGTATTCAAGGCGATGCCAACGGTGATGACTTCCAGGTGGTGCTAGTGGAGAGCACCAGCAAGCGTGTTTGCGTCATGAATTCAGAGGGTATGGCCCTGGGCTGTCAGATCGCCACGTCCAAGAAGCGAGAGAGGGACCTGGTAGATGGCTCCTTTCACAGgtttGTGAGTTCGGAGGACCAGTGCGAGGTGCTTGAGTGGTTTGTGGATGACGAGAAAAAACACAGGAATAAGCCCATCCTCGTCACcaaggagatggtggaggagaaCAAGGCAAAATGGAAGGAGATCAACGCCAGGCCCATTAAGCGAGTGGCCGAGGCTAAGGCCAGGAAGAAGAGCAGGATGCTGAAGAAGATGGAATCAGCCAAGAAGAAGGCAGAGGCGGTTGTCAGCACAGTGGACATCGGTGAAAGGGAGAAGATGGCTCATCTCAAGAGGTACTGCCATTTTAAAGAGCTTAAAAGACCTCAAGCGGTACTCCATTTTAAAGAGCTCAAGAGGTACGACCGCCACCATAAAAACCACATGCACCATAAACATTTTACACTCCTACATCTGTGGCAACGACATGTACCATCaccaacttttactttactatacCTGTGGCAGCCAGCTACATCTCCTCTGGCAGTGGCATGTACCACCACCATTTTACATTAGCAAGTGAAGTTCATCCTCtctccgggctctggctgggcaactcaagggcattcaaagacttgtcctgaagccactcttgcattgttttggctgtttGCCTAgtttcgttgtcctgttggaaggtgaaccttcctgagaacctgctccagagcactcaggaccccattaaggatctctctgtactttgctctgttcatctttccctcgatactGACTAGTTTACCATGCCCTGCcagtgaaaaacatccccacagcatgattctgccaataccatgcttcaccttagggatggtgccaggtttcctccaggcgtggtGCTTGGCata

Function

symbol description
ftsj3 Predicted to enable rRNA (guanine) methyltransferase activity and rRNA (uridine-2'-O-)-methyltransferase activity. Predicted to be involved in maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); and rRNA methylation. Predicted to act upstream of or within methylation and rRNA processing. Predicted to be located in nucleus. Predicted to be part of preribosome, large subunit precursor. Predicted to be active in nucleolus. Is expressed in several structures, including digestive system; immature eye; mesoderm; midbrain; and musculature system. Orthologous to human FTSJ3 (FtsJ RNA 2'-O-methyltransferase 3).

NR:

description
phospholipid-metabolizing enzyme A-C1 isoform X1

GO:

id name namespace
GO:0031167 rRNA methylation biological_process
GO:0005634 nucleus cellular_component
GO:0008649 rRNA methyltransferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603299.2 False 1433 mRNA 0.48 5 52230095 52235296
XM_021603298.2 False 1533 mRNA 0.48 6 52230098 52235296
XM_036977778.1 True 1051 mRNA 0.50 4 52233518 52235296

Neighbor

gene id symbol gene type direction distance location
plaat1 LOC106613501 coding upstream 74 52222828 ~ 52230021 (+)
LOC110524014 gnb4 coding upstream 61534 52147164 ~ 52168561 (+)
LOC110524011 LOC106613497 coding upstream 120378 52106568 ~ 52109717 (+)
LOC110524010 LOC106613494 coding upstream 198268 52013567 ~ 52031827 (+)
LOC110524009 LOC106613493 coding upstream 520151 51692900 ~ 51709944 (+)
LOC118964618 NA coding downstream 11477 52246773 ~ 52248895 (+)
LOC110524018 LOC105026225 coding downstream 19417 52254713 ~ 52263056 (+)
LOC118964714 NA coding downstream 640424 52875720 ~ 52896117 (+)
opa1 LOC106613511 coding downstream 1168473 53403769 ~ 53462256 (+)
LOC110524030 LOC106613513 coding downstream 1381231 53616527 ~ 53618565 (+)
G413206 NA non-coding upstream 92102 52136525 ~ 52137993 (+)
G413202 acl6b non-coding upstream 96249 52132019 ~ 52133846 (+)
G413163 NA non-coding upstream 110645 52076296 ~ 52119450 (+)
G413126 NA non-coding upstream 149061 52021206 ~ 52081034 (+)
G412944 NA non-coding upstream 316168 51907208 ~ 51913927 (+)
G413342 NA non-coding downstream 141390 52376686 ~ 52377088 (+)
G413358 NA non-coding downstream 166901 52402197 ~ 52402404 (+)
G413377 NA non-coding downstream 203494 52438790 ~ 52439079 (+)
G413919 NA non-coding downstream 468180 52703476 ~ 52703698 (+)
G413959 NA non-coding downstream 495859 52731155 ~ 52731519 (+)
G412859 NA other upstream 427275 51802250 ~ 51802820 (+)
camsap2a camsap2 other upstream 1091711 51059834 ~ 51153381 (+)
G411519 NA other upstream 1566455 50662872 ~ 50663640 (+)
LOC110523996 hcn1 other upstream 2306497 49889400 ~ 50073258 (+)
G409191 NA other upstream 3248324 48948138 ~ 48981771 (+)
G414007 NA other downstream 526093 52761389 ~ 52761729 (+)
G414041 NA other downstream 543221 52778517 ~ 52779479 (+)
G414488 LOC106562530 other downstream 876887 53112183 ~ 53112507 (+)
G415582 LOC106584099 other downstream 1942633 54177929 ~ 54183430 (+)
G415808 NA other downstream 2093899 54329195 ~ 54329780 (+)

Expression


Co-expression Network