LOC118964618


Basic Information

Item Value
gene id LOC118964618
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 52246773 ~ 52248895 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051758.1
atagctgatgggatacaggtgcgggtaatcagaactcccaactggctacattgcccggcaaccagacagggtgcgttccaggacgccggaaaaaacactccaggacagaacacaggcaaaaaacagactcaggaaacgggattcgtgacagatgtggttgtcccacctagatgaatgcacttactAGTCATTCAGGTGAGAAGTAAGGAGTATGGACTTTACCGAGTCTCACAGCGACACCGTGTCCAGCCTTGCTGTTGCAGCGTGGCAGCACATGAGAGGAATGTCAGGCGTGTGCGCTTACTGATCCGTAGAGGCTGCAGTGTGGACAGCAGTGTTGACAGCAGGGACAACCGTGCCTGGAACGTTCTCCAGGAGACTGTATGTGTGCGCCAGCAACTTaaaaggctctgcatggtcaatccaACATCTGAAGTGGCCACACAGAATTTACTGCGATGCAGCCTCTGTACATGTCAGGGGTTTCATAATTATTGTGCtagtggagcagagcagagctatTGTGAAGGTGATAAAGGAATGTATATGTTTAAAGTAATGACTAAAGGATTCCACCCTGAAATCATGTAATTGTATGGAATGTGTTAGAGTAATAATTCCATAATGTGTGTGACTAGaccattgtgttactatttcgcAATATGAGCTGGGTAGAGTTGAGACATTCAAGGCCAACTGAACTGTCAACTTGTGATAACTCTGAAAACTGACAACAGGATAGAGGGCCCGTCCAAAGCCCCTCTAATctagggaggagaggaacggCTAGAAACTGCCAGGCAGGTAGAAAAgtgataaactgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtaggggtgggaGTTATAAAATGACTGTGTTTGCATTTTTGACTTCAGAGTACTCTGAACAAAGAACTAACCTATTGCAGACTGGGGGCTTTGTCTAATTCTTCATTAACCAGGGTATTACAAACTTCTGGGAATTGGTCAAAGCTATAGTGATAGTTGAGTTCAACCATTGGGATAAACATTCTCATGACAGAAGGAAGTTGTCAAgtaagtgagtttgtgtttattaAGGACGTACCACCCCCACCTatcatcaaccaatcatgtcaaagCTATATGGAGCCCTCTGCATCGTTACAAAATTTGACAGGCGCACAGCGATACGGTACGGAGCTTGATCGAGCCTCTGCATGCCTCCGGAAGCTCTGCAATTGTGTCACATGaagcctccgaccacatttttggatcaagcataaattggcatTTAGGCTGTCGGTAAGGATTGTGTAAGTGCACCATCATTCTCTTTCTATGGCTCTTCCTCAATTGTGAAAGCCAACCTAATGATGAGCTAAGTTGACGACTCACTAAATTATTCCGCTGCTTCGCTATGTACTTTAAAGCACACGGGTAGGATTGTCAAATCGTTGCCTGCCGATGGAATTTTGCCTGCCGTTCCTAGGTGAGACAAAAAGCAGAACTACAATAGTCCCAGTATGTAAAATTATGTTGACAAGAtgttccatcagcaagggcattgaagatgaaacgtggctgggtctttcagcatgacaatgatcccaaacacaccgcccaggcaacgaaggagtgacttcgtaagaagcatttcaaggtcctggagtggcctagccagtctccagatctcaaccccatagaaaatctttggagggagttgaaagtccgtgttgcccagcaacagccccaaaacatcactgctctagaggagatctgcatggagtaatgggccaaaataccagcaacagtgtgtgaaaaccttgtgaagacttacagaaaacgtttgacctctgtcattgccaacaaagggtatataacaaagtattgagataaacttttgttattgaccaaatacttatgttCCACCATAATGTGCAAATAAATCGTTTTAAATATACTGGTAAA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051758.1 True 2037 mRNA 0.45 2 52246773 52248895

Neighbor

gene id symbol gene type direction distance location
LOC110524017 ftsj3 coding upstream 11477 52230095 ~ 52235296 (+)
plaat1 LOC106613501 coding upstream 16752 52222828 ~ 52230021 (+)
LOC110524014 gnb4 coding upstream 78212 52147164 ~ 52168561 (+)
LOC110524011 LOC106613497 coding upstream 137056 52106568 ~ 52109717 (+)
LOC110524010 LOC106613494 coding upstream 214946 52013567 ~ 52031827 (+)
LOC110524018 LOC105026225 coding downstream 5818 52254713 ~ 52263056 (+)
LOC118964714 NA coding downstream 626825 52875720 ~ 52896117 (+)
opa1 LOC106613511 coding downstream 1154874 53403769 ~ 53462256 (+)
LOC110524030 LOC106613513 coding downstream 1367632 53616527 ~ 53618565 (+)
LOC110524032 LOC106613514 coding downstream 1517875 53766770 ~ 53801558 (+)
G413206 NA non-coding upstream 108780 52136525 ~ 52137993 (+)
G413202 acl6b non-coding upstream 112927 52132019 ~ 52133846 (+)
G413163 NA non-coding upstream 127323 52076296 ~ 52119450 (+)
G413126 NA non-coding upstream 165739 52021206 ~ 52081034 (+)
G412944 NA non-coding upstream 332846 51907208 ~ 51913927 (+)
G413342 NA non-coding downstream 127791 52376686 ~ 52377088 (+)
G413358 NA non-coding downstream 153302 52402197 ~ 52402404 (+)
G413377 NA non-coding downstream 189895 52438790 ~ 52439079 (+)
G413919 NA non-coding downstream 454581 52703476 ~ 52703698 (+)
G413959 NA non-coding downstream 482260 52731155 ~ 52731519 (+)
G412859 NA other upstream 443953 51802250 ~ 51802820 (+)
camsap2a camsap2 other upstream 1108389 51059834 ~ 51153381 (+)
G411519 NA other upstream 1583133 50662872 ~ 50663640 (+)
LOC110523996 hcn1 other upstream 2323175 49889400 ~ 50073258 (+)
G409191 NA other upstream 3265002 48948138 ~ 48981771 (+)
G414007 NA other downstream 512494 52761389 ~ 52761729 (+)
G414041 NA other downstream 529622 52778517 ~ 52779479 (+)
G414488 LOC106562530 other downstream 863288 53112183 ~ 53112507 (+)
G415582 LOC106584099 other downstream 1929034 54177929 ~ 54183430 (+)
G415808 NA other downstream 2080300 54329195 ~ 54329780 (+)

Expression


Co-expression Network