LOC110524018 (LOC105026225)


Basic Information

Item Value
gene id LOC110524018
gene name LOC105026225
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 52254713 ~ 52263056 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603301.2
ATCATTCCCTCTATTGTACAGGCAGACAATGAGGGCCATGGGTAGAGGGTTTAAAAAGGATAGACTCACGCAGACAGCAAACCACCCAGCACAGAGACAGCAACCAACAGTTGAGGTGCATTTAGGAGGACTGTGCTATCCCAGGCTTCTCCTTGATGCTGTACACTTTAGCAGGAGGGGGCACACTCTGTGGTGTGGCCGCCCTCGTGCTCCTCATAGTCTCCACGGCAACCGACTTCTGGATGCAGTACCGCTACTCAGGCGCCTCGGCCAACCAGGGCCTCTGGAGGTTTTGCATCAATCACAAGTGCCATGCCCACACCATCACTGTGGCCTTCTGGGATGCGACGAGGGCCTTCATGCTGCTGGCCGTGCTGAGCTGCTTCGCTGGCGTGGTGCTGGGCCTGAGTGCCTTTGCCAATGGCACCAAGAGCAGGAGGGTCCGGATGGGGGGCATCGCTCTGCTCCTCTCAGGTGTTCTTGCTCTGTTAGCTCTGGCCATCTACACGGGCGTGACTGTCAACTTTTTTGGCAAGCGCTTCCTTGATTGGCGCTTCTCCTGGTCCTACATCTTAGGTTGGGTGGCCATCATCTTAACGTTCGTTGCTGGTGTGTTCCAACTCTGTGCCTACCAGAAGAACATTTCCGAACCACCTAACATTCAAGAAAGCTAAATGGAGCACATCTTTTACTTGCACAAAACAATCAACCTCTAGTCTTTACCATTATCATTGATAGCAATGTGACCACATTACCGTTACATTACTACCGGTGTCCTTTGGCAAAATCTACTGAACAGAATAAATAGGAATATTTGACTGTGGCCTGGTCTCTTTACTTCA

Function

NR:

description
lens fiber membrane intrinsic protein-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603301.2 True 842 mRNA 0.52 5 52254713 52263056

Neighbor

gene id symbol gene type direction distance location
LOC118964618 NA coding upstream 5818 52246773 ~ 52248895 (+)
LOC110524017 ftsj3 coding upstream 19417 52230095 ~ 52235296 (+)
plaat1 LOC106613501 coding upstream 24692 52222828 ~ 52230021 (+)
LOC110524014 gnb4 coding upstream 86152 52147164 ~ 52168561 (+)
LOC110524011 LOC106613497 coding upstream 144996 52106568 ~ 52109717 (+)
LOC118964714 NA coding downstream 612664 52875720 ~ 52896117 (+)
opa1 LOC106613511 coding downstream 1140713 53403769 ~ 53462256 (+)
LOC110524030 LOC106613513 coding downstream 1353471 53616527 ~ 53618565 (+)
LOC110524032 LOC106613514 coding downstream 1503714 53766770 ~ 53801558 (+)
LOC110524034 LOC106613518 coding downstream 1564899 53827955 ~ 53923888 (+)
G413206 NA non-coding upstream 116720 52136525 ~ 52137993 (+)
G413202 acl6b non-coding upstream 120867 52132019 ~ 52133846 (+)
G413163 NA non-coding upstream 135263 52076296 ~ 52119450 (+)
G413126 NA non-coding upstream 173679 52021206 ~ 52081034 (+)
G412944 NA non-coding upstream 340786 51907208 ~ 51913927 (+)
G413342 NA non-coding downstream 113630 52376686 ~ 52377088 (+)
G413358 NA non-coding downstream 139141 52402197 ~ 52402404 (+)
G413377 NA non-coding downstream 175734 52438790 ~ 52439079 (+)
G413919 NA non-coding downstream 440420 52703476 ~ 52703698 (+)
G413959 NA non-coding downstream 468099 52731155 ~ 52731519 (+)
G412859 NA other upstream 451893 51802250 ~ 51802820 (+)
camsap2a camsap2 other upstream 1116329 51059834 ~ 51153381 (+)
G411519 NA other upstream 1591073 50662872 ~ 50663640 (+)
LOC110523996 hcn1 other upstream 2331115 49889400 ~ 50073258 (+)
G409191 NA other upstream 3272942 48948138 ~ 48981771 (+)
G414007 NA other downstream 498333 52761389 ~ 52761729 (+)
G414041 NA other downstream 515461 52778517 ~ 52779479 (+)
G414488 LOC106562530 other downstream 849127 53112183 ~ 53112507 (+)
G415582 LOC106584099 other downstream 1914873 54177929 ~ 54183430 (+)
G415808 NA other downstream 2066139 54329195 ~ 54329780 (+)

Expression


Co-expression Network