LOC118964714


Basic Information

Item Value
gene id LOC118964714
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 52875720 ~ 52896117 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118964714
aTGAGGAAGtatcctggacttgggaagaGATTCTGGATGGGAAGGGACCCTGAACTTGGGAAGAAATCCTGGCAGGACAGGATCACCTTCCATGGCGGGAGACGCAaggagagaatggaggacagTGGCGACGACAGGGTTTGCGGCCACGATGCAAGCCCAAGAAGCAGCCTTTTTGGGCGGGGGCACACGGGGTGGTCGGCGAAGTTGAGGGGTGAGTCAGAGACCGTCGAGGAGTTATTGGAtgaattggaggagagtgaacggagggGAGAGTTAGAGATCTTCGAGGAGTTGTTGGataaattggaggagagtgaagcgAGAAAGCTGTTGGTTTGGCGTAGTATGCACGGCATTCGCCCTGAGGAGCATGTTAGCCAGCCGATGCCACTTGAGTCAGCTCCCCtctggtacgtcctgtgcctgctcctcgcactctccctgaagtggGTGTCCCCAgtcagatctatccatCAGATCCTCTTCTCCACGCTCTCAGGGCTgagtgtctcaggctctgcacattcttggattgcatcctacctggcagaaCACTCCTGCAAGGTTGCGACTCACATCTCGGTGTCCCTGCCAGATGTCTCCgtttggatgtcggcccaccacctcaaggtCAACTTAGACCAGAGAAAACCTGcccgctccaagacctctccatcacggttgacaacttcACTGGTTCCCCCTCCCAGAGTGACAAAAACATTGACATGACCTTGGACAACAAactgttctctgcaaacatcaaagcagtgactcactcCTGCAAGTTCATACTCTACAACATATgcagagtacgaccctacctcacacagaaCGAGGCGCAGGTCccaatccaggcacttgtcagcTCCTGTCTGGACTACTTCAACTTGCTGGTGGGTGGGCTCCCCTCTTGTGCCTTCAAACCCATTTACCTTATTCAGAACGCTGCAGCtcacctggtgttcaaccttcccaaattcACCCCACTCCTCCaaacactccactggcttccagttgaagctcgcatccactacaagaccatggatcttgcctacagaacagcaagaggaactgcccctccctaacCTTCAGGCTCTGCACAAACCCAAACCCAAGTACtttgttctgccacctctggtgtCTTGGGCCTCCCACCCCCACCCACACCCCCAGCTaccactcagcccagtccaagccattctctgtcctggcaccccaatggtggtgAAGGTAGGGCAGCAGAGTCCCTTCCCATCTTACAAAAACATATGAAactctacctcttcaaagagtatcttaaataa

Function

NR:

description
reverse transcriptase-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118964714 True 1310 mRNA 0.54 4 52875720 52896117

Neighbor

gene id symbol gene type direction distance location
LOC110524018 LOC105026225 coding upstream 612664 52254713 ~ 52263056 (+)
LOC118964618 NA coding upstream 626825 52246773 ~ 52248895 (+)
LOC110524017 ftsj3 coding upstream 640424 52230095 ~ 52235296 (+)
plaat1 LOC106613501 coding upstream 645699 52222828 ~ 52230021 (+)
LOC110524014 gnb4 coding upstream 707159 52147164 ~ 52168561 (+)
opa1 LOC106613511 coding downstream 507652 53403769 ~ 53462256 (+)
LOC110524030 LOC106613513 coding downstream 720410 53616527 ~ 53618565 (+)
LOC110524032 LOC106613514 coding downstream 870653 53766770 ~ 53801558 (+)
LOC110524034 LOC106613518 coding downstream 931838 53827955 ~ 53923888 (+)
LOC110524036 LOC106573996 coding downstream 1033149 53929266 ~ 53940832 (+)
G414121 NA non-coding upstream 40756 52834760 ~ 52834964 (+)
G414107 NA non-coding upstream 50430 52824745 ~ 52825290 (+)
G414095 NA non-coding upstream 60495 52815011 ~ 52815225 (+)
G414089 NA non-coding upstream 63228 52812246 ~ 52812492 (+)
G413969 NA non-coding upstream 137642 52736712 ~ 52738078 (+)
G414223 NA non-coding downstream 14196 52910313 ~ 52910530 (+)
G414228 NA non-coding downstream 17974 52914091 ~ 52914359 (+)
G414251 NA non-coding downstream 39620 52935737 ~ 52935959 (+)
G414257 NA non-coding downstream 42623 52938740 ~ 52938966 (+)
G414266 NA non-coding downstream 49303 52945420 ~ 52945706 (+)
G414041 NA other upstream 96241 52778517 ~ 52779479 (+)
G414007 NA other upstream 113991 52761389 ~ 52761729 (+)
G412859 NA other upstream 1072900 51802250 ~ 51802820 (+)
camsap2a camsap2 other upstream 1737336 51059834 ~ 51153381 (+)
G411519 NA other upstream 2212080 50662872 ~ 50663640 (+)
G414488 LOC106562530 other downstream 216066 53112183 ~ 53112507 (+)
G415582 LOC106584099 other downstream 1281812 54177929 ~ 54183430 (+)
G415808 NA other downstream 1433078 54329195 ~ 54329780 (+)
G415809 NA other downstream 1433963 54330080 ~ 54330480 (+)
mutyh mutyh other downstream 1450419 54346481 ~ 54395448 (+)

Expression


Co-expression Network