Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110524030 |
| gene name | LOC106613513 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 53616527 ~ 53618565 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: transcription factor HES-1-like |
| id | name | namespace |
|---|---|---|
| GO:0021794 | thalamus development | biological_process |
| GO:0007219 | Notch signaling pathway | biological_process |
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0001757 | somite specification | biological_process |
| GO:0045664 | regulation of neuron differentiation | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0003677 | DNA binding | molecular_function |
| GO:0046983 | protein dimerization activity | molecular_function |
| id | description |
|---|---|
| K06054 | HES1; hairy and enhancer of split 1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021603322.2 | True | 1433 | mRNA | 0.48 | 4 | 53616527 | 53618565 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| opa1 | LOC106613511 | coding | upstream | 154271 | 53403769 ~ 53462256 (+) |
| LOC118964714 | NA | coding | upstream | 720410 | 52875720 ~ 52896117 (+) |
| LOC110524018 | LOC105026225 | coding | upstream | 1353471 | 52254713 ~ 52263056 (+) |
| LOC118964618 | NA | coding | upstream | 1367632 | 52246773 ~ 52248895 (+) |
| LOC110524017 | ftsj3 | coding | upstream | 1381231 | 52230095 ~ 52235296 (+) |
| LOC110524032 | LOC106613514 | coding | downstream | 148205 | 53766770 ~ 53801558 (+) |
| LOC110524034 | LOC106613518 | coding | downstream | 209390 | 53827955 ~ 53923888 (+) |
| LOC110524036 | LOC106573996 | coding | downstream | 310701 | 53929266 ~ 53940832 (+) |
| LOC110524040 | LOC106613524 | coding | downstream | 332265 | 53950830 ~ 53961823 (+) |
| LOC110524039 | LOC106613527 | coding | downstream | 355026 | 53973591 ~ 53976232 (+) |
| G415051 | NA | non-coding | upstream | 5281 | 53610977 ~ 53611246 (+) |
| G415040 | NA | non-coding | upstream | 24068 | 53592246 ~ 53592459 (+) |
| G415038 | NA | non-coding | upstream | 25365 | 53590942 ~ 53591162 (+) |
| G415029 | NA | non-coding | upstream | 34571 | 53581587 ~ 53581956 (+) |
| G415013 | NA | non-coding | upstream | 47308 | 53568947 ~ 53569219 (+) |
| G415066 | NA | non-coding | downstream | 25388 | 53643953 ~ 53644190 (+) |
| G415068 | NA | non-coding | downstream | 26910 | 53645475 ~ 53645726 (+) |
| G415086 | NA | non-coding | downstream | 54609 | 53673174 ~ 53673410 (+) |
| G415106 | NA | non-coding | downstream | 90404 | 53708969 ~ 53709608 (+) |
| G415035 | NA | non-coding | downstream | 93935 | 53712500 ~ 53712721 (+) |
| G414488 | LOC106562530 | other | upstream | 504020 | 53112183 ~ 53112507 (+) |
| G414041 | NA | other | upstream | 837048 | 52778517 ~ 52779479 (+) |
| G414007 | NA | other | upstream | 854798 | 52761389 ~ 52761729 (+) |
| G412859 | NA | other | upstream | 1813707 | 51802250 ~ 51802820 (+) |
| camsap2a | camsap2 | other | upstream | 2478143 | 51059834 ~ 51153381 (+) |
| G415582 | LOC106584099 | other | downstream | 559364 | 54177929 ~ 54183430 (+) |
| G415808 | NA | other | downstream | 710630 | 54329195 ~ 54329780 (+) |
| G415809 | NA | other | downstream | 711515 | 54330080 ~ 54330480 (+) |
| mutyh | mutyh | other | downstream | 727971 | 54346481 ~ 54395448 (+) |
| G415946 | NA | other | downstream | 971509 | 54590074 ~ 54613142 (+) |
