LOC110522968 (LOC106613459)


Basic Information

Item Value
gene id LOC110522968
gene name LOC106613459
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 53723390 ~ 53734904 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601398.2
CAAGCACACCCTCACACAAATCCAGTCCTTTTACAGAGAGGGTGGGGCTTCCCCCTCACACAAACGCCCCACCATACTTCCccaaaaaatgtgtgtgtatgtgaggaagagaaacagacagagcacAGGCTGTGCAAGCCAGCTTCAGTACATGACCTGAAAGTTTCAAGGGCAAAGGGGGAAAAGATTGATTGAGGATGATGAACGTGATGACAAAGAGCTGAACAATGTGAGGATGTGTGGTTCTGGAAGAAACTGGAATCTCTAATTAATTCACATCTGACATTTCTGAAGAGGGAGCACAGTGACAAGAGAGGATACAAGATAGCAGACACTCCCCACCAACTCATTTCTCCGTTCACTCAACTGCCAAGCGCTGTACAAGGAGCATCAATGGACCTGCCAATCAACCTCCtcatctttctcctcctccttgccATCAGTGGAGTTCTTGGAGCGTGCCCAGATGGATGCCAGTGCAAAGACAACAAAATCCTTTGCCATGGCAGGTCAATCACAGAGTTTCCCTCCTCAGTGCCTGGTTCCACTACCACCTTCTACATCTCCAACACCAACATCACCGCTCTCAAACCTGATGACTTGGCTGATTTTGCCGAGGCCCTTGGCATCTTTGTGGTCAAAGACACTGGGATCAGAGAAGTATTCCCTGGCACCTTTGACCTCACCCATAACTTGGGTGCCCTGGGCTTCACAGGCACTGAGCTGAATGACCTGCCTGAGGCCCTGTTTCTAAATCTGGTGAAGCTAGAATCTCTGACTCTGAGCAGCAACAAGTTCCTGGTGCTTCGCCCCGCCTGGCTCTACTCCCTCGCTGCTCTGAGGACCCTGGACTTCAGCAAGAACCTCATCACGTCTGTACCAGAGAAGGCCTTTCGCTCTGTCACTCAACTGGAGCATCTCACCCTGGCCAGGAACGGCATCAACCAACTCTACAGGGACACCTTCAGGGGCCTGCGCAAGCTCAAATCCCTGCGTCTGAACCGGAACGCTCTTAGGGCGATCCCTGCTGGAGCGTTTGATGACCAGGTAAGCCTGGAGGAGCTCTCTCTGCAGGATAATGCCATCACTCATCTCCCCGCTAACCTGTTCTCCCAGCTGCAGAGGCTAAAGAAGCTTTATCTCTCCAGCAACCGTCTAACTTCCCTCCCAGAGGGGATTCTCCTCAACCTCCCTAACCTGGCACAGATCTCCCTGTATGAGAACAAGCTCCAGAGTCTGTCCCCAGGAGTGTTCGGCCCCATGGCCGTGAGGGAGCTGTGGCTGTATGATAACCAGCTGACCCACCTGGAGGAACACACCTTCAGCAACCTGACCCAGCTGCGTCTGCTGGTACTGAGCCGGAACCAGATCAGCTATGTGTCTCCCGGGGCCTTCAGTGGGCTGGCAGAGCTGGGGGAAGTGTCCCTACACACCAACCTCCTCACCAGCCTGCAGGAAAGCACCTTCCAGGGGCTGCATAAGCTGGTAAACATCTCCCTGGAGCACAATTACATCCACTCCCTTCCTGCCAGGCTTCTCCAGGGCCACTCCCACCTTGGCCAGCTGGACCTCCACAACAACTCCCTCCTCAACCTGCCCTCAGAGCTCCTCAGCACCCTCACGGTGGCCAATGAGGTGCTGCTCGCTGAAAATCCCTGGAAGTGTGACCAGGACATCGTGCCACTGCGGGACTGGCTGATACGGAACCCCACCAAGGCTAACCTCAGTACTGTGGTGTGCCTCACGCCCTCTGTCTTAAGTGGTGACAGCATAGCCGAACTGACTGACGAGGAGTTGATGTTGCCCACTCCGACCGCCGTCCCTGATATCACCccgacagagaagaggaggaagcccCACACCCCCGCTCCCAAGAGGAGCACCCCCTCCCCTGCTGCAGAGGCCACGCCCACCCAGGAGCAGGGGGAGGACACCAGCAGTGGGCAGGGGAACGGAGAGGGTGTGTCCAGGAACACGCAGATCATTATCATCGCGGTGGTCTGCACCGCCATCATCACCAGTCTCATTGTCTGCTGCGTCTGCTGGAGGATGAACAACAGAGGCAGCCGCAACCTTGGCCGCAGGAACAAAAACAACTCGGTCATCTAGACTGGCCCAGAGGCCTGAGAACCACATGGGAGGTGTACTGTACAGTTATGCTGAGCATGCCAGAGCAAACATCCTGATGCAGCTGTTCCCAAACATCTTAGCACAGGAACCCATCATGTCTCTATCATGTCTCTTCAAGAACTCATGACCAAGGACAGACTAGCTGGGGCCTGATCCTTGGGGAACTCTACTTTGTTCGAATAAGTTATTCTGATTGGGATCCCATAATATTATAACTAGACAATTTTGCAAGTCCCTCTTCAGCAAGCTTTCTGAGGTTTGAACACTATCTTGCACAAATAACCAAAAAGAACATCATCTGGAAATTGCATGGATGGAATGCACAAAATGCCATTAATCTTTTTTCAATACTGGTAAAAAAGTTTAACGTATACAACTGAAGTCAGAAGTCACCATACACGtggattggagtcattaaagctagtttttcaaccactccacacatttctggttaacaaactatagttttggcaagtcggttagtaaatctatcacaattccagtgggtcagaagtttacatacactga

Function

NR:

description
uncharacterized protein LOC110522968

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601398.2 True 2658 mRNA 0.52 2 53723390 53734904

Neighbor

gene id symbol gene type direction distance location
LOC110524026 LOC106613510 coding downstream 346791 53334333 ~ 53376599 (-)
LOC118964771 NA coding downstream 378173 53345080 ~ 53345217 (-)
kdm4b LOC101448002 coding downstream 389455 53246145 ~ 53333935 (-)
ptprsa LOC106613507 coding downstream 1035344 52404727 ~ 52688046 (-)
LOC110524020 LOC106613504 coding downstream 1349989 52351810 ~ 52373401 (-)
LOC118964619 LOC106613459 coding upstream 5740 53740644 ~ 53745563 (-)
LOC110524031 LOC106613515 coding upstream 11954 53746858 ~ 53750268 (-)
ccdc181 ccdc181 coding upstream 187903 53922807 ~ 53928736 (-)
prrg1 LOC106613522 coding upstream 206039 53940943 ~ 53945602 (-)
LOC110524038 LOC106613526 coding upstream 227038 53961942 ~ 53989222 (-)
G415297 NA non-coding downstream 5187 53717766 ~ 53718203 (-)
G415296 NA non-coding downstream 6351 53716693 ~ 53717039 (-)
G415291 NA non-coding downstream 10357 53712733 ~ 53713033 (-)
G415282 NA non-coding downstream 20248 53702884 ~ 53703142 (-)
G415280 NA non-coding downstream 23731 53699283 ~ 53699659 (-)
G415347 NA non-coding upstream 71132 53806036 ~ 53806257 (-)
G415353 NA non-coding upstream 76096 53811000 ~ 53811226 (-)
G415363 NA non-coding upstream 91312 53826216 ~ 53826584 (-)
G415393 NA non-coding upstream 119376 53854280 ~ 53854809 (-)
G415439 NA non-coding upstream 203264 53938168 ~ 53939299 (-)
G415256 LOC106613513 other downstream 104526 53617683 ~ 53618864 (-)
G412613 NA other downstream 2110828 51558378 ~ 51612562 (-)
G412372 NA other downstream 2346260 51373465 ~ 51377130 (-)
LOC110524003 LOC106613485 other downstream 2538615 51179758 ~ 51228505 (-)
G411930 NA other downstream 2999313 50723159 ~ 50724077 (-)
G415420 NA other upstream 155856 53890760 ~ 53892906 (-)
G415464 nexn other upstream 268827 54002448 ~ 54005673 (-)
G416110 NA other upstream 628382 54363286 ~ 54392411 (-)
LOC110524071 LOC106613554 other upstream 1406411 55123617 ~ 55181458 (-)
G417527 NA other upstream 1873931 55608835 ~ 55609730 (-)

Expression


Co-expression Network