LOC118964619 (LOC106613459)


Basic Information

Item Value
gene id LOC118964619
gene name LOC106613459
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 53740644 ~ 53745563 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977827.1
GTATGGTCTGCGCATCCTGCTAAGATAAATTATACGGAAATGGAGACGCATCCTATCAAGTCTCTCAATTACCAGGCATATAAGGACAAAGAGCAACACAACAAGAGCAAGTCTGCTGTGGTGCGTCTCGTTTGAAAGGCACCATGTGGAGCGTATTACTCTTTCTCCTGGTCCAGCCTTTGCACGCCGACAGCATGGTCTGCCCTAGCAGCTGCATGTGCAACCTAGAGGGGGCCGTCAAATGTGTGGGGAACATCAGTGACGTGCCCAAAGGCATGCCCACCAACATGTACCTACTTCAGCTGAATGGCACCAACATGAAGGTTCTGAACGAACAGAGTCTGGCCATGTTGCCCCTTATGCTGCGTTTAGGCATCAGCCACAGCCCCCTGGACACCATCCACCCTGAGGCCTTCCATGTGGCCCCGCAGCTCCTCTCCATCAAGCTGTCATCCAACGCCCTCTCCAGCCTCCCTTCCCGGGTGTTCAGCCCCTTGGTCGGCCTGGAGCAGCTGCATCTGGATGACAATCGTCTGGAGTCCATCGCTCCCGTGTTGTTCGAGGGTCTGGCCAACCTGAACGAACTGGACGTCAGTAACAACGCCATCGCTCACCTCACTCCCAATGTTTTCCATGGACTGAGTAGCCTGCGCTATCTCAACCTGGGGAGAAACTCCCTGCAGCAGCTGCCCCCCACCTTGTTCCACTCATTGACGCGGTTGCAGTTCCTCATGCTCTATAACAACAAGCTAGAGCGGCTGGAGGTAGGTGCCTTCGACGAGCTGGCCAACCTCCTGGAGCTCAAACTGCACAACAACCAGATCGCATACATCCCCCCCGAGGTGTTCTGGGCCCTAGGCAacctcatgacactcaccatGTACTCCAACCTGCTCCAGGGTGTCCCGAATGAAAGTTTCTACCACCTTCCCAAACTCACCAAGCTCACCATCTACAAAAACCCTCTGCTGTCACTGCCTGATAAGTTGATGGGCCAAATGCCCAGGATGAAGGACTTCTACCTGTATGACACCAAACTCAGCACCGTGCCCTGGAGCCTGTTTGCCAACATGAGCGGGATGGAGAGGCTCTCCCTGCACCTCAACAACAAGCTGAGGGAGCTGCCTCCTGACATTTTTTGCTGCCTGCCCAACCTCCAGAAGCTTTCTCTCAAGTCCAATGACATCCAGGATCTACATCCAGATATCTTCTCCAAGCTGGCCAATATGAACACTCTGCTCCTGAATGATAACAAGCTTCGCTCCCTTTCTGAGGACATATTTAAGGGCAACCCCAGTTTGGCCAACATCGAGCTGAAGAACAACCAGCTGCGGACCCTTCCGGGGGAGGTCTTCTCTACTGCAGGGGGTTTAAGGGTTGTTACTCTGAGTGGCAACCCATGGGACTGCAGGTGTGGCATCAGAGACATTGCAAGTTGGATAAAGCTTAATGAAGGTGTGGTTAGTGATCGGACGGATGTGATATGTCGTAATCCGTACCCTCTACTTCTCCGCCCACTTGGTTCTCTACTCAACGAAGAGTTTAAGTGTGACGTTACCACACCCTCGAGCAGCCGCTCCACCCGCTCTTCGATTGAACTCAGCCATGCCGTTTCCACTACAGCTCTTGAGGAGCAAGAGGCGGTAGACTTCACAGCCACAACTACTGCACCCGAGGCTCCATCAACCCAACAAACAGAAAATCCTACTGAGAGTGTCCGGTTCACCACACCTGGGACTAGGCGCACAACAGCTGCCACACCGACCGCCGACGTTCTCAACATTCTTGACGACGACTATATATTCAAGCCTATGGGCACCGAATCGCTCCCCGTCCATGTCCTATCCCCGCCCTTCCTCGACAGGCTGGTGTTTGAGAACGGGCTCGAGTTTGTGCACAACAACCGCCTAAAGGGCTGGGTTTACCTGTGGACGCTGCCACCCAATGGGGCTTACGTTGGTTTCCTCATGGCTCTCCACATCCTTCTAGTGGCCACAGGCGTGGCCCTGATTCTGGCTGCCATGTACGGGATGTACCGTCTCCACCAGGCCACGGAAGACCTAGGAGCAATACTCACAAACAGGAAACACGCCATCATATCAGAGAGGAAGCAGAAAGACCAAGATAAACTGTAGCTTCACCAAATGCGAAGATGCAGTACAGTATGTGTCGAGAGTATCATTGTGGTGAAACAGTTTTTAAAAGAATAGCGGAACAAGACCTTGGGAAACCTGTCAATGTAAAGCACAAGCCAACGCTGTCTGCATTATTTGAAGTTCATTAGCATTAGAAGAGTGTAACTGACAATTTATTCATTAGGCATATCTCGTCTCTTCCCAGTGGTAGAAGCTTTAAACAACAGGAACAAAGAATTATCCTCTCACAACATTGGTCCAAAGAGCCAGACCGTTATGGAGTTAGGCTAGctctttttttattattattgtgaAAATAACGGATGACGGTATTGATGACTATGTGGACCGAGTGAACAATTTCTCAATTCTATTGGGTGAACCATATGTTCACTAAGCTGTGGGTAAAATTCACCTCTGGAGTACAAGCTAAGCAACCTTGTCTTACTCCTAAGAGTTTTCCAGTCAATTAATGGCCATATGGTGACAGTACACATTCTTTCAGCAATACAACGATTGGCAACATCTAACCAGTGGAAAATAACGTTGTCATGGCTTATTAGTTAgatataggtcatactgtttctGCAGCTGGGGAAAGTAAGCCGAACCGCATGAATAGAAATGTCGTGATGTCATAAGATTATCTTATTCCTGTCTTTCCCACTAGCAGCTATGAGTGATCCTAATATGCCTGTATAttttacgcacgcacgcacacacacacacacacacacacacacacacacgtaagtgAGGTACTGATATCTTACTATTTAACTGCTCAGAGACATCTTGGTGGGCCGACAGGTGTGAATTATGAAAATTAGGGGACTTTTGGATGACCCCCACAAATCACAAGACCAATTGTAGTCATTTAAATGTATTACACACATTGAAAAAAAGCAGAAAAGGGGACAAGGGGACATGAGCTTCATGTATTGTAGGTGAGCCGATGCTTTTCTTTTGACTCACGGGACACGACAAATGGGAAGCTCAAGTACACCATTTGTCAATATCATAGTGTAGTAAGACATTTTTCGTTGGGAAATGTTCATTGCAATGTTCCttccaaaacaaaaacaacatccACATGAAAAACTGTTTAAGGCATTGGTATTCATTTATCACCATGTACAAAGTTGCCTATAAATCATTTGTTTTATCCC

Function

NR:

description
uncharacterized protein LOC110522968

GO: NA

KEGG:

id description
K06260 GP5, CD42d; platelet glycoprotein V

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977827.1 True 3304 mRNA 0.49 2 53740644 53745563

Neighbor

gene id symbol gene type direction distance location
LOC110522968 LOC106613459 coding downstream 5740 53723390 ~ 53734904 (-)
LOC110524026 LOC106613510 coding downstream 364045 53334333 ~ 53376599 (-)
LOC118964771 NA coding downstream 395427 53345080 ~ 53345217 (-)
kdm4b LOC101448002 coding downstream 406709 53246145 ~ 53333935 (-)
ptprsa LOC106613507 coding downstream 1052598 52404727 ~ 52688046 (-)
LOC110524031 LOC106613515 coding upstream 1295 53746858 ~ 53750268 (-)
ccdc181 ccdc181 coding upstream 177244 53922807 ~ 53928736 (-)
prrg1 LOC106613522 coding upstream 195380 53940943 ~ 53945602 (-)
LOC110524038 LOC106613526 coding upstream 216379 53961942 ~ 53989222 (-)
LOC110524044 NA coding upstream 288940 54034503 ~ 54048020 (-)
G415297 NA non-coding downstream 22441 53717766 ~ 53718203 (-)
G415296 NA non-coding downstream 23605 53716693 ~ 53717039 (-)
G415291 NA non-coding downstream 27611 53712733 ~ 53713033 (-)
G415282 NA non-coding downstream 37502 53702884 ~ 53703142 (-)
G415280 NA non-coding downstream 40985 53699283 ~ 53699659 (-)
G415347 NA non-coding upstream 60473 53806036 ~ 53806257 (-)
G415353 NA non-coding upstream 65437 53811000 ~ 53811226 (-)
G415363 NA non-coding upstream 80653 53826216 ~ 53826584 (-)
G415393 NA non-coding upstream 108717 53854280 ~ 53854809 (-)
G415439 NA non-coding upstream 192605 53938168 ~ 53939299 (-)
G415256 LOC106613513 other downstream 121780 53617683 ~ 53618864 (-)
G412613 NA other downstream 2128082 51558378 ~ 51612562 (-)
G412372 NA other downstream 2363514 51373465 ~ 51377130 (-)
LOC110524003 LOC106613485 other downstream 2555869 51179758 ~ 51228505 (-)
G411930 NA other downstream 3016567 50723159 ~ 50724077 (-)
G415420 NA other upstream 145197 53890760 ~ 53892906 (-)
G415464 nexn other upstream 258168 54002448 ~ 54005673 (-)
G416110 NA other upstream 617723 54363286 ~ 54392411 (-)
LOC110524071 LOC106613554 other upstream 1395752 55123617 ~ 55181458 (-)
G417527 NA other upstream 1863272 55608835 ~ 55609730 (-)

Expression


Co-expression Network