LOC110524031 (LOC106613515)


Basic Information

Item Value
gene id LOC110524031
gene name LOC106613515
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 53746858 ~ 53750268 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603324.2
gcacattgactcagtaccggtactcttgtatatagtctcgttattgttattttattaatcaatcatttcttttttttctttgctAATCTTTTCTTCCTTTTAACTCTGCATTCTTGGGAAAGGGAGGTCAAGTCTACGGTAAAGTTCACACGTGGCAAGTTCAAAAATGGATTGCCAAATTACTTCTTATCACAATAGAAGGAAACAAATGATTCCCTACAGACGCTCTACTTCAACGATATCAGATATGGCTTTCATCAGAGCAATCTGTCAGGACATAACACAATCTGCTTTGACAGTTGACACTATTATAGAACTTCATTTTATTGAATGATTCCAAAAGTACATCATACATCAGCCAGAGGTACAGACAGTGTCTAGGAACGTTTTGCCCTGCAATGTGAGTCATGCCTGGAGATCCATCAAGTTATTGACTATATTTTCCACAAGAGGACCAGACTGTTTCACAAGATGCAATATATCCCTGATGTTACAAGGTTAATTCACTGTGACTCACTCAACCAGGTTCTCTAAATCCTCAAGCCCCGAGATCCGTATTATAAGGATATGTGATGTTTATTTGGGATGAGATGCACAACTAGATGTCAATAACTTCCTCAGAGGAAGACAAAGGTGTCAATGAAAACAGCACTCAAGAAGCTTTATGGCAGAAACAGGCCAATCAAAATGGGTGCCAGGCACTTCATTTAACTAAAACTGCCGTACATAAACACAGCAGCCATACTGACAGAGTTGTGAGCCGTGATTTCTGGCTACAACAGCCGGGGTCATGTGGTTTGACCTCGGTGATGGATGTTCAATCAGCCCCACATTGGTGCCGATGCTCAGACCTGGAGCCAAGATGGAAGAGCTCATCTCTGGGCATGGTGCACTTTATAGGGACAGAATCAATTCACTTCTCCCTGTCCAAGATTCTCCCGCTATTATTCTTAAGGAAGTAATTCATGTAAAAGAAAAGGACTGAAAGTGCCAAGAACATCCCGTAAATAACAGGTGATAGACGACTTTCTCACTCTGCTGGCTTTGTATCTGTCGTGTTGATGAAGGGCCGCTGGCCGTGGATCCAGATCGTCATATTTCTGTCAGCCACTACATGGCCCCTCTTGCAAAGGACGGTGGTCCATTGACGAAAGCCATGGTGACTACCTATTGATTGAGTGCACTGGGGGGGGGCCCTCCTCCCACATCTGACAGGATAAAAGTATAGCTGGGATGGACCAAAGGCAGTGGATTTGCTGGGGCAGGTTGAGAACGAGTTGACACTACGGTAAGCACTTCTTTGGGACAGTTGCTTCGCTGACATGGACAGTTTTGTCTCTGTGAACTACTGGCTGGGACTGCTAGCTTTTCTGCTTCTACAAGGGGTAGTCAGTGTGGAGGGAAGAAGCATCTTCAACCCTGGAAACCATGTATATCCCCAAAGAGGAGACACAGACGCCCAGAATAAGATTCTAGCGTTGTTGCTACATAGAAGCTTAGAACCTATTGAAAGAAATGACGCTTTAGGTTTAGAGTTTGCCAACAAGCTAGCGGAGCTGAAGGAGATAGAGGCTTTGAAGGAGGACTTGGAGCTGGAAagggagctctcctcaaacacaCTAGCGGAGGACAAGTCCATACTGCGGAAAAGGGTTGAGCCCTGTTTCTGGAAGTATTGTGTATGACAGTACTTCCAGGAGCGCAGTACTGTACGTGCAGTACTGTCCTACATAGAGAGGAGCCTCTGAGTCCCGCTGCATTGCCCTAATGCTCCAAAGACTCAACACGCTCACAGGCAACAACACAACTCACCCATTACCAAGTGTTTGAATGTTGTAGCGTAACTAATATGCTAATACTATAATGTACTCATCACTGTGCTGTAACCTCTGTGCTGATGTCGCAATATTGGGCGTCTACAGGTGTTTATAATAGGTTCAATGACGGTTGGGTCTAAATCAAGGTGGGCATAAGTGACATTTTATTTGTGTTGTTTTGCATAATTACCTTGTAGTGCATAATTACCTCAAACGACCGAAATGACTTGATCGCCAGTTCGGGACTGGATGTAACGTTTCAGATGCTTCTCTACAGGACTCCAACTTTTGAGATGACAAGGAGTTATCAGCATTTCTCTAAGAATGGAAAGTATTGTTGTCACAGCCTAACATCGTCTGCTGACAAAGGACTTGGTCCATGTTTCCACACCCAGAGTAACTGTCCTCTTCTCAACATGTTGACTTTGTCTTCCTCTAGTGGTAAATGGGTGCAGTGACGCAATTCATGTACTTTCCATTGTCAAATATTAGTATTGCTTTGATGAAATATCAGTATTGCTTTGATGAAATATCAGTATTGCTTTGATGAATGTGTTACCGTTTCCTTCATTTAATAAACTATATATTATCATGCTA

Function

NR:

description
urotensin-2B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603324.2 True 2414 mRNA 0.43 5 53746858 53750268

Neighbor

gene id symbol gene type direction distance location
LOC118964619 LOC106613459 coding downstream 1295 53740644 ~ 53745563 (-)
LOC110522968 LOC106613459 coding downstream 11954 53723390 ~ 53734904 (-)
LOC110524026 LOC106613510 coding downstream 370259 53334333 ~ 53376599 (-)
LOC118964771 NA coding downstream 401641 53345080 ~ 53345217 (-)
kdm4b LOC101448002 coding downstream 412923 53246145 ~ 53333935 (-)
ccdc181 ccdc181 coding upstream 172539 53922807 ~ 53928736 (-)
prrg1 LOC106613522 coding upstream 190675 53940943 ~ 53945602 (-)
LOC110524038 LOC106613526 coding upstream 211674 53961942 ~ 53989222 (-)
LOC110524044 NA coding upstream 284235 54034503 ~ 54048020 (-)
LOC110524046 LOC106613532 coding upstream 418689 54168957 ~ 54193614 (-)
G415297 NA non-coding downstream 28655 53717766 ~ 53718203 (-)
G415296 NA non-coding downstream 29819 53716693 ~ 53717039 (-)
G415291 NA non-coding downstream 33825 53712733 ~ 53713033 (-)
G415282 NA non-coding downstream 43716 53702884 ~ 53703142 (-)
G415280 NA non-coding downstream 47199 53699283 ~ 53699659 (-)
G415347 NA non-coding upstream 55768 53806036 ~ 53806257 (-)
G415353 NA non-coding upstream 60732 53811000 ~ 53811226 (-)
G415363 NA non-coding upstream 75948 53826216 ~ 53826584 (-)
G415393 NA non-coding upstream 104012 53854280 ~ 53854809 (-)
G415439 NA non-coding upstream 187900 53938168 ~ 53939299 (-)
G415256 LOC106613513 other downstream 127994 53617683 ~ 53618864 (-)
G412613 NA other downstream 2134296 51558378 ~ 51612562 (-)
G412372 NA other downstream 2369728 51373465 ~ 51377130 (-)
LOC110524003 LOC106613485 other downstream 2562083 51179758 ~ 51228505 (-)
G411930 NA other downstream 3022781 50723159 ~ 50724077 (-)
G415420 NA other upstream 140492 53890760 ~ 53892906 (-)
G415464 nexn other upstream 253463 54002448 ~ 54005673 (-)
G416110 NA other upstream 613018 54363286 ~ 54392411 (-)
LOC110524071 LOC106613554 other upstream 1391047 55123617 ~ 55181458 (-)
G417527 NA other upstream 1858567 55608835 ~ 55609730 (-)

Expression


Co-expression Network