LOC110524034 (LOC106613518)


Basic Information

Item Value
gene id LOC110524034
gene name LOC106613518
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 53827955 ~ 53923888 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603327.2
CATAGCAGAGGGGGaggagttagtgtgtgtgtgtgtgaggggggtcaTTACAACAAATGTGTCCCTGACTGAAGTAGTCCAATTTCCGCCCCACAGCCGTCCGCAGCATCTACCAAAGGACGCATTTAATGGGACTCGAATCTTCATTTTCAACTCTTACGTGACTGTCACGTTCCAGCTGGACTCCGCAAGCCGCCCATGGTAATTGTATTACATGACTGAGGATTTTGTACAAACTGCAAGCTAGTGCGCTTGAGTAGTGTCCCACCAAAGATAACTAACGACAGAAAGATGGATGTTCACTTTCCCACTAGTAGTATCTTGTCCATTGTCCTTCAAGCGCTCTTGTTGTCGTCTTCATATGGTTCGTTGGAGCCCTACGACCTTTTATACAATAATGCCGTCGACGCCTTTTACAGAAGTGACTATAAAGATGTAGTGCGATACATGGAGGGAGCGCTCAGCAGCTACGCAGAGGTCCGCCAGACTAAAGTCCGATGTCGACTGAGGTGCCAGGACCAGCACCCGTTTGACTCTGTTTCCATGGACCTGCAGTTCTTTGACGTGGTTCTCCGAAGATCAAATTGTCAAAACGAGTGCATCGAAGAGAAGGTTGGAACGCAGTCCATGCACAAAGTCAGCGAGGATGTCAACCAGGATTTCCAGAGACGAATCCCGTACAACTATCTTCAGTTGGCGTATCAGAAgcTGAAGCAGTTGGACAAGGCAGCGGCGGCGGCCCACACCTATTTCCAGGCCAACCCAGAGCATGTGGAAATGGATCAGAACTTAGAGCAGTACAAGGCTCTGGAGGGATCCGACCAGGACCACTTTGTGGACAGAGAGGCCCGGCCTCATCAGAGGTCCTTCTCAGCCGGGGTGAAGCTGTATGACACTGCAGACTACAAGGGTGCCATCGCCCTGTTCGAGGAGGCCCTCCAGGAGTACTACAGGGCCGACGTGGAGTGTCGGGCCCTCTGCCATGGGCCCCAGAGGTTCGAGGAGCAGGACCATGTCCTCTACCGCTACAGCCTATACGAACTGGTCTCAGaccaCTTCACCCAGGCGCTGCACTGTGAACACGAGTGTGTGAGGGACCTGTCGACCCGGCCCGGCCGTCTGTCTCCCATGGAGAACTACCTGCCTCTACACTACGACTACCTGCAGTTTGCCTACTTCCAGAtgaACATGGTGGAGGAGGCGATGGAGTGTGCCAAGTCCTACCTGCTGTTCCACGAGGGGGAGGAGTTTATGACGGAGAACGTGGACTACTACAGAGAGGCCGTGGGCCACGACGTCAAGCCCCGGGAGAAGGCCGAGTGGTACCTGAGACGCCATAAGCAGGAGCTGGAGCTACTAGTGATTGGCAGTGAGAACATGCACGTGGAATTTACAGAGGGGCATTACTGGACCAGCTCAGGTGGAAGAGAGGATTCGAACAGGATCCCCTCTGGTaccgatggatggatggagtatGTACCCATCTCAGAGAAGAAGAACTTCACTCTGGCCCCACCACAGAAGCTCAGAGAAGGAGGGCCCTTGGTGTATGACAGTGTGCAGCTGGTCCAGAACTCAAAGGCCCTGAACGGAACTCAGAGGGTTCTTCTGGATGATGTCATATCTGTGGACGAGTGTGCCGAGCTCACAAACCTGGCCCATACTGTCACTATGGCAGGAGACGGATACCGAGGGAAGATGTCTCCTCACACGCCCAACGAGAGGTTTGAGGGAGCCACTGTGCTGAAAACACTGCAGTACGGCTACGAGGGCCGTGTCCCATTGAGAAGCGCTCGTCTGTTCTATGATGCCAGTGAGAGGGCCAGACGCATCATCGAGTCCTACTTCCTGCTCAACTCGACGCTCCACTTCTCCTACACACACCTGGTGTGCCGGACCGCAATCACAGGGCAACAGGACCATAGAAATGACCTGAGCCATCCCATCCACGCTGACAACTGTCTGTTAGACCCAGAGGCCAACGAGTGCTGGAAAGAACCACCAGCCTACACCTACAGAGACTACAGTGCTCTGCTGTACCTGAATGGAGACTTTGAGGGAGGAGAGTTCATCTTCACAGAAATGGACGCCAAAACAGTCACAgCACAGGTGAAGCCAAAGTGTGGTCGTATGGTGGGGTTCTCGTCTGGCGGGGAGAACCCCCATGGCGTGAGGGCCGTCACCAGGGGGCAGAGGTGTGCCGTGGCCCTGTGGTTCACCCTGGACCCCCTCTTCAGAGAACTGgaGCGCCTGCAGGCAGATGAGGTGATGCAGGCGTTGGACAACCAGAGCAGCCAATCACAGTGGGACACAAGCCTCAACATCAACCCCAAAGACGAGCTGTAGTAGTCCGCCGGCCCCCAGCCCAGCACCCCCCAAATCTTTATATCTATCTATTTATTTAATGAAGTTTGGATCAGAACAATTTTATTTTTGTACTGTTTGAAGTGCAAGGTTATATAGTTGTTTGTGTTGCCGTCGTGGCATTTAGTCTGTTGTTGTGATTTTTTTCTCCTTCTGTACATACCAGTACTTGAGTTCGCGTTtgggtctttgtttttctttccattgactctctctctctctctctctctctgttggggtGAAACCCAGTCATTGTGCCTCACACTTTATAAGGTCCAGTTGACTTTGTGACGACTTTATAAGGTCCAGTTGACTTTATAAGGTCCAGTTGACTTTGTGATGACTTTATAAGGTCCAGTTCACTTTGCGATGACTTAAAATGCTCAGTTCCCTTTGTGATGACTTTGTGTAGTGTGCGGGTGTGCGCGCGCACAAGGTTGTTACAACACAGACCTGTCATACATATGAACAGTTCTTACTGCACTGTGATCAAGCGAAAGAGAAGAACAGCAGTCGACATTGCCGTTCTCTTGTTATAGAAAAGACAACGGGCTGTTTATAACGTTTCAAACATGAACTCATAAAACAAATCGGCCGTGGGATTATCTCCTTCGGGCGGTGTAAACACAGTTGATATGTTTCATCTACTTATTCACTGAAACATTGGCTGGAGTATATGCATTCACCGAGAGAAAGAGGTCAGGCTTTTCTTTACAAACAGGGAGCTGTAAATCCCTTTCGGTGACTGACAACGATGACTGAACTGATCTGTCACTATTTTCCCGTGCACTTTCTTCTCGTTTGTGGTGTGGTGAAGAGACACCGTTTTCGTGACTCACATCCCTCCCTAGCTCTGGTCCATGGCGTTAGCAAGCCTTACTAACGCCTTGGACCAGAGCTAATCCCTCCCGTCAATTGCAATCAAACGCCGAGCAAGATAACTGTTTACAAGTTAGCTGACACACGGGCATGgagtgtgttttgttgttgttgtgtgttttacGTGTCTGTTTTTAAGATAGACAGCTGCTATTGCAATTGTCGGCATTTGATATTAGAAGCTTTTTAATAAAAGATGTCATTTATTCCTGTTTAAAGGAATTCCTATTTTAAGGTGGCTTATAGGTGTCCTTTCCTTTCGAAACTTCCTCATTTCCTGGGTCAAaatagacagacaggcacacacactgttAAAATTCAATGGAAAGAACGTGCCTTGTGTACTATGATATTTCAATGATTACAACTGCTAACTATACGTAACTTATGCATTTTAAGTTAGATTAGGGGTTTTATCTTATCTTTTGATAGGGAGGATGGCCACTCACTAATATTTAAATATAAATTGCTGTAGCACAAACAAATTGTTGTATCCATCTATTTTGTTGTTAATGTGTACTTATAAATTAAAAAGACAATATTTCAATAAATAACTTAAACCGTGTCCTTTATTATTTGGGAACTTGTAAATTGTTTACAATTTGAACACATTGTCTATAGGTTCAGTTGTAAACCAACATCATTTCATGTAGTGGTTttacaaaaatgtatttgaaaatctATACATGAATATGACGATAAGTAAATCGATCTTACATATCAAGATAAACATAGAGGTGAATTATGCATAGTACTGACTGTTCCAACTCAGACTTGTCTAATTACAAACGATGTATGCCGTATCAAACCATCGTTCTTTTTAAATCTCTTAGCATCTATAGTAAGTGCATTGTCTCAAATCAGATAGCCGTGGGAAATAGGGGTGCTCCAGCACCCACTGAGAAATCCGGAAAAAATGCACACACCCAAAAAAATCTTCGCAGCACCCCCACCCTCAAAACATCTTCAGAATGAAGCCGTAGAATGACGCCCTCGGACGGAAGACAATGTGGTCGGCGTAGATGCCACTACTACAAAGGACCTAACTTAAGATAGATTTAAGAATAAACTTAAAAACACTCGGTGACAAACGGTTTATAAAGGCATTGTGGTAACAGTGGCAATATGGGCTACCCACACCGAGACGACCTACTAGCACTGCAGGCATTGGTGAGCTCAATGTCTTCTAGTAGGCTAGGTTAAAGTGCATCAGcaacagagaggaggctgttgaCAATGTAGAGAACAAGTGCCAGTAGACCTATGATCACATTCTGTATATATATTTGTCGTCGCACAGCTATTGAGCCAGTCACCTTGGTTATAATCATTCATTTGCTCAAATAATCTctttatatactgtacacagcGAGCACGGGATTGATCCCCGACGCCTGATCAATTCGGAACCCTGAGGAGTTGTGCATGTCTTACGAGGTAACGTCGAAGGGAACAGAACTTCGGAGATCATCTGTGACAAATGAAAAGGTAGAAAACAAAGCCCTTCTCTCAACAGTAGTCAACAGTGCTGATCCCATCTAAAGATTCACTTTCAGTAAAAATGCCTCATTTTAAGTTGTATGCTAGTTGATACTGGAACAGAGCCTAGATTTCTTTggtgatttcccccccc
>XM_021603328.2
ATAGCAGAGGGGGaggagttagtgtgtgtgtgtgtgaggggggtcaTTACAACAAATGTGTCCCTGACTGAAGTAGTCCAATTTCCGCCCCACAGCCGTCCGCAGCATCTACCAAAGGACGCATTTAATGGGACTCGAATCTTCATTTTCAACTCTTACGTGACTGTCACGTTCCAGCTGGACTCCGCAAGCCGCCCATGAAGTGACTATAAAGATGTAGTGCGATACATGGAGGGAGCGCTCAGCAGCTACGCAGAGGTCCGCCAGACTAAAGTCCGATGTCGACTGAGGTGCCAGGACCAGCACCCGTTTGACTCTGTTTCCATGGACCTGCAGTTCTTTGACGTGGTTCTCCGAAGATCAAATTGTCAAAACGAGTGCATCGAAGAGAAGGTTGGAACGCAGTCCATGCACAAAGTCAGCGAGGATGTCAACCAGGATTTCCAGAGACGAATCCCGTACAACTATCTTCAGTTGGCGTATCAGAAgcTGAAGCAGTTGGACAAGGCAGCGGCGGCGGCCCACACCTATTTCCAGGCCAACCCAGAGCATGTGGAAATGGATCAGAACTTAGAGCAGTACAAGGCTCTGGAGGGATCCGACCAGGACCACTTTGTGGACAGAGAGGCCCGGCCTCATCAGAGGTCCTTCTCAGCCGGGGTGAAGCTGTATGACACTGCAGACTACAAGGGTGCCATCGCCCTGTTCGAGGAGGCCCTCCAGGAGTACTACAGGGCCGACGTGGAGTGTCGGGCCCTCTGCCATGGGCCCCAGAGGTTCGAGGAGCAGGACCATGTCCTCTACCGCTACAGCCTATACGAACTGGTCTCAGaccaCTTCACCCAGGCGCTGCACTGTGAACACGAGTGTGTGAGGGACCTGTCGACCCGGCCCGGCCGTCTGTCTCCCATGGAGAACTACCTGCCTCTACACTACGACTACCTGCAGTTTGCCTACTTCCAGAtgaACATGGTGGAGGAGGCGATGGAGTGTGCCAAGTCCTACCTGCTGTTCCACGAGGGGGAGGAGTTTATGACGGAGAACGTGGACTACTACAGAGAGGCCGTGGGCCACGACGTCAAGCCCCGGGAGAAGGCCGAGTGGTACCTGAGACGCCATAAGCAGGAGCTGGAGCTACTAGTGATTGGCAGTGAGAACATGCACGTGGAATTTACAGAGGGGCATTACTGGACCAGCTCAGGTGGAAGAGAGGATTCGAACAGGATCCCCTCTGGTaccgatggatggatggagtatGTACCCATCTCAGAGAAGAAGAACTTCACTCTGGCCCCACCACAGAAGCTCAGAGAAGGAGGGCCCTTGGTGTATGACAGTGTGCAGCTGGTCCAGAACTCAAAGGCCCTGAACGGAACTCAGAGGGTTCTTCTGGATGATGTCATATCTGTGGACGAGTGTGCCGAGCTCACAAACCTGGCCCATACTGTCACTATGGCAGGAGACGGATACCGAGGGAAGATGTCTCCTCACACGCCCAACGAGAGGTTTGAGGGAGCCACTGTGCTGAAAACACTGCAGTACGGCTACGAGGGCCGTGTCCCATTGAGAAGCGCTCGTCTGTTCTATGATGCCAGTGAGAGGGCCAGACGCATCATCGAGTCCTACTTCCTGCTCAACTCGACGCTCCACTTCTCCTACACACACCTGGTGTGCCGGACCGCAATCACAGGGCAACAGGACCATAGAAATGACCTGAGCCATCCCATCCACGCTGACAACTGTCTGTTAGACCCAGAGGCCAACGAGTGCTGGAAAGAACCACCAGCCTACACCTACAGAGACTACAGTGCTCTGCTGTACCTGAATGGAGACTTTGAGGGAGGAGAGTTCATCTTCACAGAAATGGACGCCAAAACAGTCACAgCACAGGTGAAGCCAAAGTGTGGTCGTATGGTGGGGTTCTCGTCTGGCGGGGAGAACCCCCATGGCGTGAGGGCCGTCACCAGGGGGCAGAGGTGTGCCGTGGCCCTGTGGTTCACCCTGGACCCCCTCTTCAGAGAACTGgaGCGCCTGCAGGCAGATGAGGTGATGCAGGCGTTGGACAACCAGAGCAGCCAATCACAGTGGGACACAAGCCTCAACATCAACCCCAAAGACGAGCTGTAGTAGTCCGCCGGCCCCCAGCCCAGCACCCCCCAAATCTTTATATCTATCTATTTATTTAATGAAGTTTGGATCAGAACAATTTTATTTTTGTACTGTTTGAAGTGCAAGGTTATATAGTTGTTTGTGTTGCCGTCGTGGCATTTAGTCTGTTGTTGTGATTTTTTTCTCCTTCTGTACATACCAGTACTTGAGTTCGCGTTtgggtctttgtttttctttccattgactctctctctctctctctctctctgttggggtGAAACCCAGTCATTGTGCCTCACACTTTATAAGGTCCAGTTGACTTTGTGACGACTTTATAAGGTCCAGTTGACTTTATAAGGTCCAGTTGACTTTGTGATGACTTTATAAGGTCCAGTTCACTTTGCGATGACTTAAAATGCTCAGTTCCCTTTGTGATGACTTTGTGTAGTGTGCGGGTGTGCGCGCGCACAAGGTTGTTACAACACAGACCTGTCATACATATGAACAGTTCTTACTGCACTGTGATCAAGCGAAAGAGAAGAACAGCAGTCGACATTGCCGTTCTCTTGTTATAGAAAAGACAACGGGCTGTTTATAACGTTTCAAACATGAACTCATAAAACAAATCGGCCGTGGGATTATCTCCTTCGGGCGGTGTAAACACAGTTGATATGTTTCATCTACTTATTCACTGAAACATTGGCTGGAGTATATGCATTCACCGAGAGAAAGAGGTCAGGCTTTTCTTTACAAACAGGGAGCTGTAAATCCCTTTCGGTGACTGACAACGATGACTGAACTGATCTGTCACTATTTTCCCGTGCACTTTCTTCTCGTTTGTGGTGTGGTGAAGAGACACCGTTTTCGTGACTCACATCCCTCCCTAGCTCTGGTCCATGGCGTTAGCAAGCCTTACTAACGCCTTGGACCAGAGCTAATCCCTCCCGTCAATTGCAATCAAACGCCGAGCAAGATAACTGTTTACAAGTTAGCTGACACACGGGCATGgagtgtgttttgttgttgttgtgtgttttacGTGTCTGTTTTTAAGATAGACAGCTGCTATTGCAATTGTCGGCATTTGATATTAGAAGCTTTTTAATAAAAGATGTCATTTATTCCTGTTTAAAGGAATTCCTATTTTAAGGTGGCTTATAGGTGTCCTTTCCTTTCGAAACTTCCTCATTTCCTGGGTCAAaatagacagacaggcacacacactgttAAAATTCAATGGAAAGAACGTGCCTTGTGTACTATGATATTTCAATGATTACAACTGCTAACTATACGTAACTTATGCATTTTAAGTTAGATTAGGGGTTTTATCTTATCTTTTGATAGGGAGGATGGCCACTCACTAATATTTAAATATAAATTGCTGTAGCACAAACAAATTGTTGTATCCATCTATTTTGTTGTTAATGTGTACTTATAAATTAAAAAGACAATATTTCAATAAATAACTTAAACCGTGTCCTTTATTATTTGGGAACTTGTAAATTGTTTACAATTTGAACACATTGTCTATAGGTTCAGTTGTAAACCAACATCATTTCATGTAGTGGTTttacaaaaatgtatttgaaaatctATACATGAATATGACGATAAGTAAATCGATCTTACATATCAAGATAAACATAGAGGTGAATTATGCATAGTACTGACTGTTCCAACTCAGACTTGTCTAATTACAAACGATGTATGCCGTATCAAACCATCGTTCTTTTTAAATCTCTTAGCATCTATAGTAAGTGCATTGTCTCAAATCAGATAGCCGTGGGAAATAGGGGTGCTCCAGCACCCACTGAGAAATCCGGAAAAAATGCACACACCCAAAAAAATCTTCGCAGCACCCCCACCCTCAAAACATCTTCAGAATGAAGCCGTAGAATGACGCCCTCGGACGGAAGACAATGTGGTCGGCGTAGATGCCACTACTACAAAGGACCTAACTTAAGATAGATTTAAGAATAAACTTAAAAACACTCGGTGACAAACGGTTTATAAAGGCATTGTGGTAACAGTGGCAATATGGGCTACCCACACCGAGACGACCTACTAGCACTGCAGGCATTGGTGAGCTCAATGTCTTCTAGTAGGCTAGGTTAAAGTGCATCAGcaacagagaggaggctgttgaCAATGTAGAGAACAAGTGCCAGTAGACCTATGATCACATTCTGTATATATATTTGTCGTCGCACAGCTATTGAGCCAGTCACCTTGGTTATAATCATTCATTTGCTCAAATAATCTctttatatactgtacacagcGAGCACGGGATTGATCCCCGACGCCTGATCAATTCGGAACCCTGAGGAGTTGTGCATGTCTTACGAGGTAACGTCGAAGGGAACAGAACTTCGGAGATCATCTGTGACAAATGAAAAGGTAGAAAACAAAGCCCTTCTCTCAACAGTAGTCAACAGTGCTGATCCCATCTAAAGATTCACTTTCAGTAAAAATGCCTCATTTTAAGTTGTATGCTAGTTGATACTGGAACAGAGCCTAGATTTCTTTggtgatttcccccccc

Function

NR:

description
prolyl 3-hydroxylase 2-like isoform X1

GO: NA

KEGG:

id description
K22459 P3H2; procollagen-proline 3-dioxygenase 2

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603327.2 False 4876 mRNA 0.47 15 53827955 53923888
XM_021603328.2 True 4657 mRNA 0.47 16 53827956 53923888

Neighbor

gene id symbol gene type direction distance location
LOC110524032 LOC106613514 coding upstream 26397 53766770 ~ 53801558 (+)
LOC110524030 LOC106613513 coding upstream 209390 53616527 ~ 53618565 (+)
opa1 LOC106613511 coding upstream 365699 53403769 ~ 53462256 (+)
LOC118964714 NA coding upstream 931838 52875720 ~ 52896117 (+)
LOC110524018 LOC105026225 coding upstream 1564899 52254713 ~ 52263056 (+)
LOC110524036 LOC106573996 coding downstream 5378 53929266 ~ 53940832 (+)
LOC110524040 LOC106613524 coding downstream 26942 53950830 ~ 53961823 (+)
LOC110524039 LOC106613527 coding downstream 49703 53973591 ~ 53976232 (+)
LOC110524041 LOC106613525 coding downstream 67368 53991256 ~ 54005206 (+)
LOC118964527 NA coding downstream 92723 54016607 ~ 54018708 (+)
G415189 NA non-coding upstream 736 53826979 ~ 53827219 (+)
G415182 NA non-coding upstream 10863 53816853 ~ 53817092 (+)
G415117 NA non-coding upstream 100345 53727409 ~ 53727610 (+)
G415112 NA non-coding upstream 109792 53717793 ~ 53718163 (+)
G415035 NA non-coding upstream 115234 53712500 ~ 53712721 (+)
G415144 NA non-coding downstream 24747 53948635 ~ 53949648 (+)
G415467 NA non-coding downstream 83999 54007887 ~ 54008098 (+)
G415474 NA non-coding downstream 86703 54010591 ~ 54010880 (+)
G415543 NA non-coding downstream 153748 54077636 ~ 54077904 (+)
G414488 LOC106562530 other upstream 715448 53112183 ~ 53112507 (+)
G414041 NA other upstream 1048476 52778517 ~ 52779479 (+)
G414007 NA other upstream 1066226 52761389 ~ 52761729 (+)
G412859 NA other upstream 2025135 51802250 ~ 51802820 (+)
camsap2a camsap2 other upstream 2689571 51059834 ~ 51153381 (+)
G415582 LOC106584099 other downstream 254041 54177929 ~ 54183430 (+)
G415808 NA other downstream 405307 54329195 ~ 54329780 (+)
G415809 NA other downstream 406192 54330080 ~ 54330480 (+)
mutyh mutyh other downstream 422648 54346481 ~ 54395448 (+)
G415946 NA other downstream 666186 54590074 ~ 54613142 (+)

Expression


Co-expression Network