ccdc181 (ccdc181)


Basic Information

Item Value
gene id ccdc181
gene name ccdc181
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 53922807 ~ 53928736 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603329.2
AGGTCTCTATGACAACAGGACTATTAAAGCCTTTAgtggagcaggggagagggacacGCACAGGAGATTATCTGGACAGGTGCTCCGGCCGGCTTGTATCACCAAAATGTAGGCCATTAAAACGAATAACGAGTTCCCACATAAGAGGATATAAtacacattattttatttttattctgaGTAAAAAGGAGACGCACAAGCATCTGGTAGTGATGAGTCTGGTGCCAACGAGCACTAGGACCCAGGAGGAGTATGAGGACGACTTTGAGAAGGACCTGGATTGGCTGATCAGTGAGGAGGGGACGAACGATGGCCAGGAACCTGACTACGAGGACATCGAGGCTGAAATAGACAAGGAGctgaaggaggaggggaaggaggaagagaaaaagcgagggaggaaggaggacaagaaaagcctgaaggaggagaagtGGGCGAGCGAGTCAGAgaaggcggaggaggaggagaggtggccCTCGCCCATGGAACCTTTGGAATTCGACTCTGACCGAGACAGTCCATATAAGGGCGGATCCCCCCTAGCGCCGCCACCTCCGGTGCTGGAAGACCAACCGGAAGAGGAGAAGAAGTACATCCTGGAGAAGATCCAGCTAGCCAATCGGCAGCTGCAGGACCAGGAAGCGCCGGACATGACTCGGCGCCGACGCCTTCACTTCAAAGAAACGCTGGTGGATTTGGTGGTGGCGCCACTGGAGTACGAGAAAGACAGCAGCACCCCCCAAAAGACGGGGGTGGTAGAGCAGGTGAGCAGCACGGCCAGCAAGGAaatggaggtagagagtgagGTGTCAGGGAAGCTCTCTGAGCTGAAGCTCAACCCTCgggaaggggaaggaggagggcagGGGCTCAAGGGTGGGGGTGGTGGGGAGGCTGGCCAGAGTGGACTGGGGAAAGAGGGCAAAGTCCTGGTGGAGAAAGATGGCAAGTTTGACCTTGTCAGCCTGAAGGAGGTGGAGAGCCGTGGCCTGATGCTGCCACCTTTAGCGAGCTTCCCCAGCGACAACTCACGCTTGTCCTCCCGTCCAAGTGACCTAAGCCCGAACAAGACCCCCACATCCTCCCCGCTGCGTCCCATCTCTAGCACTATGTCCATAGGGATCGAGCACCACCGCGCCCCCAGACCTCCGGCCCAGCCCAGGAACCGGCCCAACTCGGCCAGTCACAGCCAGAGGGGCAGCGGGGGGAGGGGCACCAAGCGCAGGGTGCAGTCGGCCAACAGTGCCCCTACCCAGCAGGCCACCTTCACTCTCTCGCCCCAACAGAAGGAGCTACTGAACAaaatacaggagaggagagagaggctcgCCAGAGAGgaggagcagaggaagagggaggaggatgagCAGAAGCGTCAGGAGAATGAGCTGGCGTTCCGGGCATGGCTGGTGAGGAAGAGGGAGCAGttgcaggaggagaagaggatcgACAGagcccaggagatggagagaaggaatgGCAGGAGGGAGCACAGTGACCCAGGCGAGGCCTTTAAGTCGTGGCTGCAGAGGAAACACGAacaacagcagagagacagacagctggaggagatgaagaggctggaggaggagagtggattCTACATGCACAACCGAGAAGAGTGTGAACGAGCCTTCAAACTgtggCTGAAGAAGAAGCGGGCAGAGAAGCGGGCGGAGCAGCAGGCGGCCAGAGAGCGCTCCCGCAGGCTGGTGTTTGAGGAGCGGCGCGCCAGGCGCATGCAGGACCTCCTGTGCACCGTCAACGAGACCAAGCCTTTCCGCTTCACTGAGCACCTGGCGTACCGCTTCTGAACCCACCATTCGCAATTCGAGAGGAAATAGTCGAGATCTGAGCAAAGCTAAGAGTACaggatacacagagacacatgaaCACGGATGAAATTGTATACGACTTAGGGCCTACATAGTTGTCCATTTTTGCTCTATAAAAGGTACAACTTattgtttttgggggggggggggaaatcaccAAAGAAATCTAGGCTCTGTTCCAGTATCAACTAGCATACAACTTAAAATGAGGCATTTTTACTGAAAGTGAATCTTTAGATGGGATCAGCACTGTTGACTACTGTTGAGAGAAGGGCTTTGTTTTCTACCTTTTCATTTGTCACAGATGATCTCCGAAGTTCTGTTCCCTTCGACGTTACCTCGTAAGACATGCACAACTCCTCAGGGTTCCGAATTGATCAGGCGTCGGGGATCAATCCCGTGCTCgctgtgtacagtatataaagAGATTATTTGAGCAAATGAATGATTATAACCAAGGTGACTGGCTCAATAGCTGTGCGACGACAAATATATATACAGAATGTGATCATAGGTCTACTGGCACTTGTTCTCTACATTGtcaacagcctcctctctgttgCTGATGCACTTTAACCTAGCCTACTAGAAGACATTGAGCTCACCAATGCCTGCAGTGCTAGTAGGTCGTCTCGGTGTGGGTAGCCCATATTGCCACTGTTACCACAATGCCTTTATAAACCGTTTGTCACCGAGTGTTTTTAAGTTTATTCTTAAATCTATCTTAAGTTAGGTCCTTTGTAGTAGTGGCATCTACGCCGACCACATTGTCTTCCGTCCGAGGGCGTCATTCTACGGCTTCATTCTGAAGATGTTTTGAGGGTGGGGGTGCTGCGAAGATTTTTTTGGGTGTGTGCATTTTTTCCGGATTTCTCAGTGGGTGCTGGAGCACCCCTATTTCCCACGGCTATCTGATTTGAGACAATGCACTTACTATAGATGCTAAGAGATTTAAAAAGAACGATGGTTTGATACGGCATACATCGTTTGTAATTAGACAAGTCTGAGTTGGAACAGTCAGTACTATGCATAATTCACCTCTATGTTTATCTTGATATGTAAGATCGATTTACTTATCGTCATATTCATGTATagattttcaaatacatttttgtaaAACCACTACATGAAATGATGTTGGTTTACAACTGAACCTATAGACAATGTGTTCAAATTGTAAACAATTTACAAGTTCCCAAATAATAAAGGACACGGTTTAAGTTA
>XM_021603331.2
TAGGTCTCTATGACAACAGGACTATTAAAGCCTTTAgtggagcaggggagagggacacGCACAGGAGATTATCTGGACAGGTGCTCCGGCCGGCTTGTATCACCAAAATGTAGGCCATTAAAACGAATAACGAGTTCCCACATAAGAGGATATAAtacacattattttatttttattctgaGTAAAAAGGAGACGCACAAGCATCTGGTAGTGGTGAGTTCATTTCGATGTTTGGGTAACGGTACGGTTGTGCTTTAACTATTTCAGACTTGCGCCTCATAATAAAGTGTGTAGGCTATTGCTTGTGGAAATAGTAGCCTATTCTAATGTTACATCATCGTGTTAGGCTTCTATGTTTCCTCTTGAATTGGGGCCTAGAGACCAggctatgtctgtctgtcacatcaCGCAGTCCTGTTGTATCAGTAATATTCTACAAGCTGCAATAAATCTGCCAGTAACTCCAACAACAGTTAAGACAAGTTAGCCTATTTCACAATACGATCCCATAATAAAAAATAATGCAAACAACTGCACCTGTCCCAGGTTGAAGTGTTTATCCTGCGCTATGCGTCATTTGGCCATGGGAGGGCCACGGGAGTCGTGAATACAGGTTCACTATAGTATTGTGTGACATATGATCTGTGAGTGTTCAGAAGTTGTATGCTTGTGATGTGTGCTCAAAACAGTCGGGAATGCTATTCTATTTTAGTTGTATGAGGGATTGTCAATGCACAAACTCGAACTGAACTGGTGTGAATTTAAATACAATGGACGTATGTATACCCTTGGAAGTATAATTATGGGGCTATCATCACAATTGGCCCTGCATATACAATGCTCCGGTTGATCTTCTATTGTCCTTCACGCTATTCCTTTGGAGAAGATGAGTCTGGTGCCAACGAGCACTAGGACCCAGGAGGAGTATGAGGACGACTTTGAGAAGGACCTGGATTGGCTGATCAGTGAGGAGGGGACGAACGATGGCCAGGAACCTGACTACGAGGACATCGAGGCTGAAATAGACAAGGAGctgaaggaggaggggaaggaggaagagaaaaagcgagggaggaaggaggacaagaaaagcctgaaggaggagaagtGGGCGAGCGAGTCAGAgaaggcggaggaggaggagaggtggccCTCGCCCATGGAACCTTTGGAATTCGACTCTGACCGAGACAGTCCATATAAGGGCGGATCCCCCCTAGCGCCGCCACCTCCGGTGCTGGAAGACCAACCGGAAGAGGAGAAGAAGTACATCCTGGAGAAGATCCAGCTAGCCAATCGGCAGCTGCAGGACCAGGAAGCGCCGGACATGACTCGGCGCCGACGCCTTCACTTCAAAGAAACGCTGGTGGATTTGGTGGTGGCGCCACTGGAGTACGAGAAAGACAGCAGCACCCCCCAAAAGACGGGGGTGGTAGAGCAGGTGAGCAGCACGGCCAGCAAGGAaatggaggtagagagtgagGTGTCAGGGAAGCTCTCTGAGCTGAAGCTCAACCCTCgggaaggggaaggaggagggcagGGGCTCAAGGGTGGGGGTGGTGGGGAGGCTGGCCAGAGTGGACTGGGGAAAGAGGGCAAAGTCCTGGTGGAGAAAGATGGCAAGTTTGACCTTGTCAGCCTGAAGGAGGTGGAGAGCCGTGGCCTGATGCTGCCACCTTTAGCGAGCTTCCCCAGCGACAACTCACGCTTGTCCTCCCGTCCAAGTGACCTAAGCCCGAACAAGACCCCCACATCCTCCCCGCTGCGTCCCATCTCTAGCACTATGTCCATAGGGATCGAGCACCACCGCGCCCCCAGACCTCCGGCCCAGCCCAGGAACCGGCCCAACTCGGCCAGTCACAGCCAGAGGGGCAGCGGGGGGAGGGGCACCAAGCGCAGGGTGCAGTCGGCCAACAGTGCCCCTACCCAGCAGGCCACCTTCACTCTCTCGCCCCAACAGAAGGAGCTACTGAACAaaatacaggagaggagagagaggctcgCCAGAGAGgaggagcagaggaagagggaggaggatgagCAGAAGCGTCAGGAGAATGAGCTGGCGTTCCGGGCATGGCTGGTGAGGAAGAGGGAGCAGttgcaggaggagaagaggatcgACAGagcccaggagatggagagaaggaatgGCAGGAGGGAGCACAGTGACCCAGGCGAGGCCTTTAAGTCGTGGCTGCAGAGGAAACACGAacaacagcagagagacagacagctggaggagatgaagaggctggaggaggagagtggattCTACATGCACAACCGAGAAGAGTGTGAACGAGCCTTCAAACTgtggCTGAAGAAGAAGCGGGCAGAGAAGCGGGCGGAGCAGCAGGCGGCCAGAGAGCGCTCCCGCAGGCTGGTGTTTGAGGAGCGGCGCGCCAGGCGCATGCAGGACCTCCTGTGCACCGTCAACGAGACCAAGCCTTTCCGCTTCACTGAGCACCTGGCGTACCGCTTCTGAACCCACCATTCGCAATTCGAGAGGAAATAGTCGAGATCTGAGCAAAGCTAAGAGTACaggatacacagagacacatgaaCACGGATGAAATTGTATACGACTTAGGGCCTACATAGTTGTCCATTTTTGCTCTATAAAAGGTACAACTTattgtttttgggggggggggggaaatcaccAAAGAAATCTAGGCTCTGTTCCAGTATCAACTAGCATACAACTTAAAATGAGGCATTTTTACTGAAAGTGAATCTTTAGATGGGATCAGCACTGTTGACTACTGTTGAGAGAAGGGCTTTGTTTTCTACCTTTTCATTTGTCACAGATGATCTCCGAAGTTCTGTTCCCTTCGACGTTACCTCGTAAGACATGCACAACTCCTCAGGGTTCCGAATTGATCAGGCGTCGGGGATCAATCCCGTGCTCgctgtgtacagtatataaagAGATTATTTGAGCAAATGAATGATTATAACCAAGGTGACTGGCTCAATAGCTGTGCGACGACAAATATATATACAGAATGTGATCATAGGTCTACTGGCACTTGTTCTCTACATTGtcaacagcctcctctctgttgCTGATGCACTTTAACCTAGCCTACTAGAAGACATTGAGCTCACCAATGCCTGCAGTGCTAGTAGGTCGTCTCGGTGTGGGTAGCCCATATTGCCACTGTTACCACAATGCCTTTATAAACCGTTTGTCACCGAGTGTTTTTAAGTTTATTCTTAAATCTATCTTAAGTTAGGTCCTTTGTAGTAGTGGCATCTACGCCGACCACATTGTCTTCCGTCCGAGGGCGTCATTCTACGGCTTCATTCTGAAGATGTTTTGAGGGTGGGGGTGCTGCGAAGATTTTTTTGGGTGTGTGCATTTTTTCCGGATTTCTCAGTGGGTGCTGGAGCACCCCTATTTCCCACGGCTATCTGATTTGAGACAATGCACTTACTATAGATGCTAAGAGATTTAAAAAGAACGATGGTTTGATACGGCATACATCGTTTGTAATTAGACAAGTCTGAGTTGGAACAGTCAGTACTATGCATAATTCACCTCTATGTTTATCTTGATATGTAAGATCGATTTACTTATCGTCATATTCATGTATagattttcaaatacatttttgtaaAACCACTACATGAAATGATGTTGGTTTACAACTGAACCTATAGACAATGTGTTCAAATTGTAAACAATTTACAAGTTCCCAAATAATAAAGGACACGGTTTAAGTTA

Function

symbol description
ccdc181 Predicted to enable microtubule binding activity. Predicted to be located in cytoplasm; cytoskeleton; and motile cilium. Orthologous to human CCDC181 (coiled-coil domain containing 181).

NR:

description
coiled-coil domain-containing protein 181 isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603329.2 False 3062 mRNA 0.51 6 53922807 53928735
XM_021603331.2 True 3736 mRNA 0.49 5 53922807 53928736

Neighbor

gene id symbol gene type direction distance location
LOC110524031 LOC106613515 coding downstream 172539 53746858 ~ 53750268 (-)
LOC118964619 LOC106613459 coding downstream 177244 53740644 ~ 53745563 (-)
LOC110522968 LOC106613459 coding downstream 187903 53723390 ~ 53734904 (-)
LOC110524026 LOC106613510 coding downstream 546208 53334333 ~ 53376599 (-)
LOC118964771 NA coding downstream 577590 53345080 ~ 53345217 (-)
prrg1 LOC106613522 coding upstream 12207 53940943 ~ 53945602 (-)
LOC110524038 LOC106613526 coding upstream 33206 53961942 ~ 53989222 (-)
LOC110524044 NA coding upstream 105767 54034503 ~ 54048020 (-)
LOC110524046 LOC106613532 coding upstream 240221 54168957 ~ 54193614 (-)
LOC110522970 LOC106613460 coding upstream 271454 54200190 ~ 54249220 (-)
G415393 NA non-coding downstream 67998 53854280 ~ 53854809 (-)
G415363 NA non-coding downstream 96223 53826216 ~ 53826584 (-)
G415353 NA non-coding downstream 111581 53811000 ~ 53811226 (-)
G415347 NA non-coding downstream 116550 53806036 ~ 53806257 (-)
G415297 NA non-coding downstream 204604 53717766 ~ 53718203 (-)
G415439 NA non-coding upstream 9432 53938168 ~ 53939299 (-)
G415460 NA non-coding upstream 65283 53994019 ~ 53994561 (-)
G415464 nexn non-coding upstream 73712 54002448 ~ 54005673 (-)
G415468 NA non-coding upstream 79403 54008139 ~ 54008478 (-)
G415420 NA other downstream 29901 53890760 ~ 53892906 (-)
G415256 LOC106613513 other downstream 303943 53617683 ~ 53618864 (-)
G412613 NA other downstream 2310245 51558378 ~ 51612562 (-)
G412372 NA other downstream 2545677 51373465 ~ 51377130 (-)
LOC110524003 LOC106613485 other downstream 2738032 51179758 ~ 51228505 (-)
G416110 NA other upstream 434550 54363286 ~ 54392411 (-)
LOC110524071 LOC106613554 other upstream 1212579 55123617 ~ 55181458 (-)
G417527 NA other upstream 1680099 55608835 ~ 55609730 (-)
LOC110522975 LOC106613586 other upstream 2780062 56703896 ~ 56711499 (-)

Expression


Co-expression Network