LOC110524036 (LOC106573996)


Basic Information

Item Value
gene id LOC110524036
gene name LOC106573996
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 53929266 ~ 53940832 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603332.2
TCGGTTCAAGACAAGGACACACCCCCGGTCCTTAGCGTGCCTGCGCGGCTGTCTACTTGTGATTGTAGTTTTCAGTTTTGCTAGATGGATGTCTACAAACTGTGCATTTTACATGGAGATGACAGCTAGATAATTTACAAATCATGGCGACCATCGTTCTTTATTCCATGAACAGAACGGCGCAAACCACGGCGAGACTATGTTTTTTTCCGTATTCAACGCGAGGTTCCATAGTGGACTCGCGCATATCTTTCTTCCATAACACTTCGGTCCGCTGGTTAACTCCGCTTCCGGGAGCGAGATGGGTTCCCAAAGCTACTGGAGTGCAGTTCATGTCCAATGGGACTGCAGGCAAAACGGCAACCGGGCGAACCAGGAGAAGCGCCCTGCTGGTTGCTGGAGCAGCGGCGGCAGTGGTGGGTTTTGTGGCAAGCGCTAGTCACTTTCAGCGGGCTGAAAGGGCAACCATGATCACCAAAACAGAGGAGACGGAGATATCGGAGAAATGCAAGAAGTTCATGTCTCCGCCGTGTACTGACGTCAAAGTGCTGCAGCAGAAAAAAGAGGAAATGTGCACGAGGATGGAGATGCTGATCATGGAGACTCAGGCGGAGTTCTGCAGAGCGCTCTAGGAGGTGGACGGCGGCAAGTTCAAAGTGGACAAGTGGGAACGGAAAGAAGGCGGCGGGGGCATCAGCTGTGTGCTGCAGGATGGGAAGGTGTTTGAGAAGGCGGGGGTCAACGTGTCCGTGGTGTTTGGGAACCTGACCGAGGAGGCCGCCAAGCAGATGCGCAGCAGAGGGAAGGTTCTCCGAGGGAAAGATGGCATCCTGCCATTCTGTGCCATGGGCGTAAGCTCAGTCATCCACCCCAAGAACCCCCACATTCCCACAGTGCACTTCAACTACAGATACTTTGAGATAGAAGAAGAAGATGGCACTAAACAGTGGTGGTTTGGTGGCGGTACAGACCTGACTCCTACCTATGTCAATAAGGAGGATGGCGCTCACTTTCACAACAGTCTGAAGGAGGCCTGTGAAAAACATCACCCCAAGTACTACCCCGACTTCAAAAAGTGGTGTGACCGGTACTTCTACATCCGCCATCGTGGCGAGACGCGGGGCATCGGTGGCATCTTCTTTGACGACCTGGACTCTCCCAGCCAGGAGGAGGCGTTCAGCTTCGTTAGGAGCTGTGCCCAGACCGTGGTGCCCTGTTACCTGCCCATCGTCTACAAACACCTCGATGACCCCTTCAGCCCAGAGGAGAAGGACTGGCAGCAGGTGCGGAGAGGCAGgtaTGTGGAATTTAACCTGGTGTATGACAGAGGGGTGAAGTTTGGACTGGCCACCCCAGGCTCCAGGATCGAGAGCATCCTCATGTCTCTGCCCCTCACAGCCAAGTGGGAGTACATGCATGAACCTCCTAAAGGTTCCCAGGAGGCCGATACGCTAGAGGTGTTACGAAACCCCAAGGAGTGGGTCTGAAATGGCCGTTGCCGTGGAGataccaacctgactcagcctTCAGAACAGGAGCCGACAGATGTTGACTGGAACAGGCGTCCGTCCCTTTGACTGCTTTGTCATTGGCCAACTCACCGCTGATGCGATTAGCTAGTTGTTACTGGAAAATGCACACCTGCCTTTATTtattttgctgtctgtttctTATTGCTTGATATAAAATTGTCTGTGTCAGATAAGCCTTAACACtaccatttaaatgttttatccagagtgacttacaggaacaATTTGGGCCTGTTGATTTCAAACTAGTGACTTTTTCGGTAACTGGCCCGACACTCCCTGAACCGCTACCCCTTTGCCTTCCGCCCGACTGCTTCAGTTAATATTTCCTGTGTACCAACTGGTCTAGATTGGCTTGCTCTGCTAGTATATTTGTCTCTCCAGCTACAGTCTGAGAGCCCTCTTGGTCTCCAAAGCAACCCAGGGTTGTGTTCACCAGGCAAGGCACTTTGAAAGAGAATTCATGTTTCAAACCGACCCGTGAAAGTGGACTGACCCCACTCAGGGTGTGTGATAAGCCATTGATGTAAAATAGAATTAAAATGTTATGTCTAGCACTTTGTACATGTCATACATTTATAAAATAAATTGAGGGGATCAACAACCTGTGATTCTCTGGACTCAAACCCAGTACCTCATCTACTGCGCTAGGACAGGGGGAATGCACCAGTCGTGTTTTTCCACATAGGTCAAGTTAgaaatgtgattgtttttaatgcccaCCCTTCACCTCAAAAGGCATTTTTCTATTTGTCTTGCCTGTAAACTCCACTCACTATGCTCTGCCCACTGATCTTTTATCAATTAAGCCAGACTACTTCCTGAATGTTGACACGGTTAGGACACCAGGGCTTTAGAGAAATATAAAGTATCTTCATGCATGGTTAGGTTTGAACAGCCTTTTTAAAATA

Function

NR:

description
oxygen-dependent coproporphyrinogen-III oxidase, mitochondrial-like

GO:

id name namespace
GO:0042541 hemoglobin biosynthetic process biological_process
GO:0006779 porphyrin-containing compound biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0004109 coproporphyrinogen oxidase activity molecular_function

KEGG:

id description
K00228 CPOX, hemF; coproporphyrinogen III oxidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603332.2 True 2443 mRNA 0.50 7 53929266 53940832

Neighbor

gene id symbol gene type direction distance location
LOC110524034 LOC106613518 coding upstream 5378 53827955 ~ 53923888 (+)
LOC110524032 LOC106613514 coding upstream 127708 53766770 ~ 53801558 (+)
LOC110524030 LOC106613513 coding upstream 310701 53616527 ~ 53618565 (+)
opa1 LOC106613511 coding upstream 467010 53403769 ~ 53462256 (+)
LOC118964714 NA coding upstream 1033149 52875720 ~ 52896117 (+)
LOC110524040 LOC106613524 coding downstream 9998 53950830 ~ 53961823 (+)
LOC110524039 LOC106613527 coding downstream 32759 53973591 ~ 53976232 (+)
LOC110524041 LOC106613525 coding downstream 50424 53991256 ~ 54005206 (+)
LOC118964527 NA coding downstream 75779 54016607 ~ 54018708 (+)
LOC110524043 NA coding downstream 79113 54019945 ~ 54024504 (+)
G415189 NA non-coding upstream 102047 53826979 ~ 53827219 (+)
G415182 NA non-coding upstream 112174 53816853 ~ 53817092 (+)
G415117 NA non-coding upstream 201656 53727409 ~ 53727610 (+)
G415112 NA non-coding upstream 211103 53717793 ~ 53718163 (+)
G415035 NA non-coding upstream 216545 53712500 ~ 53712721 (+)
G415144 NA non-coding downstream 7803 53948635 ~ 53949648 (+)
G415467 NA non-coding downstream 67055 54007887 ~ 54008098 (+)
G415474 NA non-coding downstream 69759 54010591 ~ 54010880 (+)
G415543 NA non-coding downstream 136804 54077636 ~ 54077904 (+)
G414488 LOC106562530 other upstream 816759 53112183 ~ 53112507 (+)
G414041 NA other upstream 1149787 52778517 ~ 52779479 (+)
G414007 NA other upstream 1167537 52761389 ~ 52761729 (+)
G412859 NA other upstream 2126446 51802250 ~ 51802820 (+)
camsap2a camsap2 other upstream 2790882 51059834 ~ 51153381 (+)
G415582 LOC106584099 other downstream 237097 54177929 ~ 54183430 (+)
G415808 NA other downstream 388363 54329195 ~ 54329780 (+)
G415809 NA other downstream 389248 54330080 ~ 54330480 (+)
mutyh mutyh other downstream 405704 54346481 ~ 54395448 (+)
G415946 NA other downstream 649242 54590074 ~ 54613142 (+)

Expression


Co-expression Network