LOC110524040 (LOC106613524)


Basic Information

Item Value
gene id LOC110524040
gene name LOC106613524
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 53950830 ~ 53961823 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603337.2
TCTGTGATATTTCAGCAATGTGCAGTGCAGTCACATCAGCAGTTGTGGTACGGCTGCAGCAGCGTCCCTGACGCGCAGAGGCTGCCTACTCTCCATACCGCGGGGGATAATCCCAAAATTCTTGGTTTGCGACCCAACCGCAAACCCACGATCCTCGGAGAAAGATACTTTTGTTTAGCACCCAATCCGCCATCCATGGCTTCATCCGGGAGTGGAATGGAGGAAGTGCGCGTATCGGCGTTGACGCCCCTGAAGTTGGTGGGCTTGGTGTGCGTCTTCCTCGCGCTCTGCCTGGATGTCGGAGCTGTGTTGAGCCCCGCGTGGGTAACGGCGGATAACCAGTACTACCTGTCTCTGTGGGAGTCCTGCTGGAAGCCCGTCACCTCGGACACATGGCAGTGCAACACCACACTCGAGACTGacTGGCAGATTGCCACGCTGGTTCTGTTGCTGGGTGGTGCAGCCCTCATCCTGTTCTCCTTCCTGGTGGCCCTGGTGTCAGTGTGGTTCGGCTCCAGGAGCCACTGCTACAGACCCATTGCTGTCATGCTGTTCGCTGCAGTGGTGCTCCAGGTCTGCAGTTTGATCCTCTACCCTGTTAAGTTCATTGAGACGGTCAGCCTGAGGATATACCACGAGTTCAACTGGGGCTATGGCCTCGCCTGTGGGGCCACCATCTTCTCTTTTGGAGGGGCCATTCTCTACTGCCTCAACCCCAAGAACTATGACGACTACTACTAAACCCTGCaagattagagaggaggagaggcctctACACAACTTCATTTCCCCCCACACTCGCTGTGAAAGCAGCTGAAACACTGAACCTTATCGAACTGGTAGAGAAAACACATGTTCACACACATCAATTGGAGAATCAACAACAGTAGTGTCTATCTATACATTCAAACCTTtacaatactgtactataccagACTTAAAGGGACACGCTTTAGCACAGTATGAGCTTGTGGCCTCCACAGGCATCTCCGCCTGTGTTGTGACCAACATCTGCCATAGGCTAAGTGGTGAGGCTAAAGAGCCAATCAGACAGTTCAATGGAATACTACTTACCAATCAGATTCACCAGTGAAATCATGTCCACATTCTGAGCCAACAGTAGGTCCCCTTTAATGCAGGAACTCCAGTAGGAATTGGCAGCACAATGCTTTGTCATGAATAAACCACAGAGAAGGGACAGCTGAGAGTGACGGACACACAGACCAATCGGAGAGCAGAGGGATGGGCCAGGTGGACAGATTGATCTTGAGGAAAGGAAGGTGACTCACCTAAGAAAAGGAATCAAGGATGCATGACATCACCCCCACTCATATAAGTGATTACCTTTGCTTGTGCCTTTATTTAATCTGTGCCAATCTAAAAGAAGATTGGATGGGTTAAGGCAGGCAGCATAGAGTCATTTGCTTTTACTTAtactgcaaaatgtgtagaattgcagagaATTAGTTGTAAAACTCTTGAGTCTCTCCACCCTTGGcaacatgtgtagaattgcaacaAACTTgcttttaaaactgcaacattttctctacgccccatggaagaatttgtagaattgcaggaaattgaaACTCTAAAACTCTTTTTTTCCTCTCCGCTGTCAAGAGGGGACGCTAAAATGCTCGCAGGGTGCCTGtatgggtatggatgtgggtacgcagacctgCGATCCACTGCTGCCCCTcgtgatgagttcagatttttaaTGGCCCCCAACTCTAATCTAAAACCAACTGTACCCTGCGGCCTAACCCCATCTGTGCCTGCTTCGAATAGCAGCAGTTGTATGATATGTAAATAGAGTAGTTAGAGGTGCTTTTGTGTGGTAAATGCATTTCTAATACAGTAAATTAgagaagtagtagtagtttatTTAAAGGGACAATGTGCAAATAAAAACACGTTTCAGACAGTGAAATATGATGCTTGCACCAGAATACGCTCAACACAGCTAATTTTAATCCACAGTCCCTAACTAAGCAATACGAAATACATAAACATACCTAAATCCACACACATCACTCATACAGTAGTATAGTACAATATAacacaggggtgtcaaactcattccacggaggaccaagtgtctgggttttttttttttccatttaattaagacctagacaaccaggtgaggggagttccttactgattAGTGACCTTAATCCATCAATCAAGTACactcggccctctgtggaatgagtttgacatatGTGATATAACAGATGAAAGCAAACACAGGAAACATTAAATACAACTAATAGAATAAAACACATTGAGACTTTTGTGCATTAAGAATTAGTCAATGTGTGCAGGATTGATGCACCTTGATCCAAGCTTTGATTTAACCTTCATGGAGAAGGATTTAAAGTCGCTAGTGCTTCTGAAGGTAGACGGGCGGGAATTCCATTTTCTGATGACTGAGGTGGAGAATGCTGACTTTCCATTCCTTTTAGGAATGACACAGTCTCCTCTTGTTGAGGTTGAGGTCGCTGCTGTTTTGTTCCGCAACCTGGTCTCAAAGCATTTTGCTTTATTCTGTATGCAAATCcatgacactccatttagtatcaTATAAGATTTGACATGTTTGATATGTTGGGTTTTgtgtggtatgtattaatttgtggatgtccatcacccatttcgtacaatatgttacgaattctagctaggtggctaacgttagccaggctaggggtttgggttaagtttcggagttaggttaaaggttaggggaagagttagctaaaagggttgaggttagggttgagggaagggttagctaacatgctaagtagttgaaaaCTAACAAAAAAAGTTGTAAGTaattgaaaagttgctaattagccaAAATGGTCCGTGATGAAATTCtaacacacaacctttgggttgctagatcgCATAGTTCGCATTAAACACCCACCCAACTTTCATATTTACcataagtaaccatctgtcttatgtaaccataccaaacgtaacatattcatttcagtgtcccggatttacatgtaCTATGTTACGCTTAGTCGGAGACCAGGCTGTGTTCAGAGCTTAAAATGACAAAATCTTTCAGAGGTGGGGGTGCAACGTAGTTGATAATCTTATAAACTAGACAGACAACTGAGAAAACAAAGTTTTGTATTTGGGGAGATTACTATGGTGATGGTAATGTGATTTCCCGTCAAGGATATTCAGTGCTTGTTTACATAGAGATCGAAGGGGCTTAATTTATGTTTCATTGGCTTGAGGCCAGCTGGTTATACAATAGGTGAGAGAAGATCATTGCATGTAAATTCATCTTGATGTATCGGAAATTTGAAAGACATATCCGATTTTGCTGGACATCTTAATGTTCTGTTGTTGTTCAAAGTAGGGTCTAGGTCAATGCCCAAATATTTAAACTCTGGATGAGTATGTCTGGGTAAGCATGTTTAGTTTTGTGGAGAATTACATCACTGCCGTTGTTCCCACATTGACGTTGAGCCATTTAGCCACTTTCTCCAATGATGTGTGTGAAGAAGGCAAAcgaccattgtgtgtgtgtgtgagagaggcctGGAGCCATATGACCAGTCACTCCCACACTCCCCATTCGATGCCTCTTATTGGTTGAAACTGTTGGGGTCTGCATCCcaaactgcaccctattcccaataacGCTCGTCTTGAATACTCTGTATTCAAGACAAGAGTATATTTGTCTAGAATATACTACAGTTCCTGATCCATAACATCTTAAAATGAAAGTTAGTTGGCCTTTATATTAAAAACAATACAAGTAAATGGAGTGTGTAGGAATGCATGTGTGCTTGGAGGTAGACAGTGTGTGCGTAGGAGCAgcgaggcgtgtgtgtgtgtgccgagaGTGGATGAGTATGGATTGCTGCTGCCGTGTGGCTGACGCCTATTAGTTTGTTCACTACCACAATAAAACAGGTAatggaaaaag

Function

NR:

description
transmembrane protein 47-like

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603337.2 True 3976 mRNA 0.44 3 53950830 53961823

Neighbor

gene id symbol gene type direction distance location
LOC110524036 LOC106573996 coding upstream 9998 53929266 ~ 53940832 (+)
LOC110524034 LOC106613518 coding upstream 26942 53827955 ~ 53923888 (+)
LOC110524032 LOC106613514 coding upstream 149272 53766770 ~ 53801558 (+)
LOC110524030 LOC106613513 coding upstream 332265 53616527 ~ 53618565 (+)
opa1 LOC106613511 coding upstream 488574 53403769 ~ 53462256 (+)
LOC110524039 LOC106613527 coding downstream 11768 53973591 ~ 53976232 (+)
LOC110524041 LOC106613525 coding downstream 29433 53991256 ~ 54005206 (+)
LOC118964527 NA coding downstream 54788 54016607 ~ 54018708 (+)
LOC110524043 NA coding downstream 58122 54019945 ~ 54024504 (+)
zgc:153738 LOC106613531 coding downstream 87216 54049039 ~ 54057375 (+)
G415144 NA non-coding upstream 1182 53948635 ~ 53949648 (+)
G415189 NA non-coding upstream 123611 53826979 ~ 53827219 (+)
G415182 NA non-coding upstream 133738 53816853 ~ 53817092 (+)
G415117 NA non-coding upstream 223220 53727409 ~ 53727610 (+)
G415112 NA non-coding upstream 232667 53717793 ~ 53718163 (+)
G415467 NA non-coding downstream 46064 54007887 ~ 54008098 (+)
G415474 NA non-coding downstream 48768 54010591 ~ 54010880 (+)
G415543 NA non-coding downstream 115813 54077636 ~ 54077904 (+)
G415547 NA non-coding downstream 117646 54079469 ~ 54079672 (+)
G414488 LOC106562530 other upstream 838323 53112183 ~ 53112507 (+)
G414041 NA other upstream 1171351 52778517 ~ 52779479 (+)
G414007 NA other upstream 1189101 52761389 ~ 52761729 (+)
G412859 NA other upstream 2148010 51802250 ~ 51802820 (+)
camsap2a camsap2 other upstream 2812446 51059834 ~ 51153381 (+)
G415582 LOC106584099 other downstream 216106 54177929 ~ 54183430 (+)
G415808 NA other downstream 367372 54329195 ~ 54329780 (+)
G415809 NA other downstream 368257 54330080 ~ 54330480 (+)
mutyh mutyh other downstream 384713 54346481 ~ 54395448 (+)
G415946 NA other downstream 628251 54590074 ~ 54613142 (+)

Expression


Co-expression Network