LOC110524039 (LOC106613527)


Basic Information

Item Value
gene id LOC110524039
gene name LOC106613527
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 53973591 ~ 53976232 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603335.2
AAAAATTATGCAAGACACTCCTCTTTTTAAGGCAATATTCCCTAATTGATTGCCTGCCCCGAAGACACATGTATTGACAGTTATCAAATACCTCAAAAGTTGAATTAATCATTTCAAAAACGAGTTAATAAAAAATGGTACTATAGTTAAAAAGTCCATAGTTGTACGGCGTCATGTCGGCTGATGCTGTGGTTACCATGTAACGGGACTGGAGTCTTTTACGCAACAATGTGGACCAATGTCATGAACATGGGCCTACAAAATCCTACGCCACAATTTATGAAGTTATAGGCTATGATAAAAGCAAAGTGACATGAAAAGACATATTAAATGTTGTGCGAAAGAAGAACAGGATCGACTTTCAACTGCACATTTATTGGAGGTCGGCGATGACTGTGTTGATTACTATGATCAAACAGAGAGCAATGACGGAGTCGGTGCCTGGTCGCAAGATGCATGTAGTTACAGGATTGATATTTGCACCAAGGGCAAACTGTCCAGAAAAATTATTTCATATCAGAGAAGAGAGTGTGCAGAGAATACATGTGATGTCATATCGCAATCTCAGCATTACAACGACCCTGAGCGGTTCATTGAACAATACAGAAGTGACAGATTGCGCCGTTTCCCCTGTCACACACATATCCCTACACATCCGGGGACATGGGTGGTGCTGAAAAGCTGCGAGGAAGAGCCCTTCGATTTTACCATGCCACCAATCAGAGGTAAAAACAACAGCGCTACTGGAGACTACTTGGAGCAACAATATGCACTTATATCTGAAAAAAGAGACACGTTTTCCAAACACAAACAGACGGATGAATGTAAAAAGTTATCTTCTGCATGTGTTCAAGATGATGAAATGCTCTGTTTTACCTGCCACGCTATGCTAAGGTCATTTCAAAATTGTGGAGACAAGGAGCTGTCCTACTATGAGCCAAATGGCACAGTCTACTCACCTATCAACAACATGGGCATCAAGCTGCTGACAGTGCAACAAACACAGACCTCGTTGGACGCCTTGCGGAGGAACCAGCGACTCAGGAGCAGCGCTGTCATCAGGAGGCACCCACGAGCCAATAAGAGTGCCACCTTAGGGGACATCTCCCTGTCAACATTCAAAAACAACGTGGTGTGGTGTAACGGCTATCGAGAGACCTCTTCCATGCAGGCCGCCGCTCTCCCTGATGTTCCCAGTTCTTCATCCAAGAAAGGAAACAATAAGGCCAATCCTTTTACGGTCAAAGGGTTGAGAAGGCTCCCTCCAAGTCAGAATGGGACCAGGCCTGGCCGCTCCTTTCCCGAGTCATCTCCTCCCAGTGGGAGATCCATCACCCCAGGCACCCagctctcctccaccacccccctACCTCCATCGCACCCCTGGAAGTCCAGCTCTACATGCTACCTGACCCCTCCACAGTTGGCACCCACTAAGCCCCTGGTGGTCCAGCAGAGGAAAAAGAGATGGTGCCCTCTCCAAGACGGTGAGAGGGTTGGCTTTGCAGAGATTTTGTTGAAACAGAGGATAATGGTATTACATTAAATGCAGTTACATTTTCTATGCTAATTCGTATCATACAGACTCTTTGCTCCTTGT
>XM_021603336.2
ATGATTctcttctattctattatgtCTAGTTTTGGTTGATACAGATTAGAGCCAGCGAAAGTCTGTTCATGCGAAATCTTATGTAAGGTTTAATTACTAAAATATATGCCACTGTCACTGAGTTCAGGAAAAACTCTGATTTCCCAACAGTGTTCAAGATGATGAAATGCTCTGTTTTACCTGCCACGCTATGCTAAGGTCATTTCAAAATTGTGGAGACAAGGAGCTGTCCTACTATGAGCCAAATGGCACAGTCTACTCACCTATCAACAACATGGGCATCAAGCTGCTGACAGTGCAACAAACACAGACCTCGTTGGACGCCTTGCGGAGGAACCAGCGACTCAGGAGCAGCGCTGTCATCAGGAGGCACCCACGAGCCAATAAGAGTGCCACCTTAGGGGACATCTCCCTGTCAACATTCAAAAACAACGTGGTGTGGTGTAACGGCTATCGAGAGACCTCTTCCATGCAGGCCGCCGCTCTCCCTGATGTTCCCAGTTCTTCATCCAAGAAAGGAAACAATAAGGCCAATCCTTTTACGGTCAAAGGGTTGAGAAGGCTCCCTCCAAGTCAGAATGGGACCAGGCCTGGCCGCTCCTTTCCCGAGTCATCTCCTCCCAGTGGGAGATCCATCACCCCAGGCACCCagctctcctccaccacccccctACCTCCATCGCACCCCTGGAAGTCCAGCTCTACATGCTACCTGACCCCTCCACAGTTGGCACCCACTAAGCCCCTGGTGGTCCAGCAGAGGAAAAAGAGATGGTGCCCTCTCCAAGACGGTGAGAGGGTTGGCTTTGCAGAGATTTTGTTGAAACAGAGGATAATGGTATTACATTAAATGCAGTTACATTTTCTATGCTAATTCGTATCATACAGACTCTTTGCTCCTTGT

Function

NR:

description
uncharacterized protein LOC109902935

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603335.2 False 1600 mRNA 0.46 5 53973591 53976232
XM_021603336.2 True 904 mRNA 0.49 4 53974572 53976232

Neighbor

gene id symbol gene type direction distance location
LOC110524040 LOC106613524 coding upstream 11768 53950830 ~ 53961823 (+)
LOC110524036 LOC106573996 coding upstream 32759 53929266 ~ 53940832 (+)
LOC110524034 LOC106613518 coding upstream 49703 53827955 ~ 53923888 (+)
LOC110524032 LOC106613514 coding upstream 172033 53766770 ~ 53801558 (+)
LOC110524030 LOC106613513 coding upstream 355026 53616527 ~ 53618565 (+)
LOC110524041 LOC106613525 coding downstream 15024 53991256 ~ 54005206 (+)
LOC118964527 NA coding downstream 40379 54016607 ~ 54018708 (+)
LOC110524043 NA coding downstream 43713 54019945 ~ 54024504 (+)
zgc:153738 LOC106613531 coding downstream 72807 54049039 ~ 54057375 (+)
obscna LOC106613530 coding downstream 107123 54083355 ~ 54168958 (+)
G415144 NA non-coding upstream 23943 53948635 ~ 53949648 (+)
G415189 NA non-coding upstream 146372 53826979 ~ 53827219 (+)
G415182 NA non-coding upstream 156499 53816853 ~ 53817092 (+)
G415117 NA non-coding upstream 245981 53727409 ~ 53727610 (+)
G415112 NA non-coding upstream 255428 53717793 ~ 53718163 (+)
G415467 NA non-coding downstream 31655 54007887 ~ 54008098 (+)
G415474 NA non-coding downstream 34359 54010591 ~ 54010880 (+)
G415543 NA non-coding downstream 101404 54077636 ~ 54077904 (+)
G415547 NA non-coding downstream 103237 54079469 ~ 54079672 (+)
G414488 LOC106562530 other upstream 861084 53112183 ~ 53112507 (+)
G414041 NA other upstream 1194112 52778517 ~ 52779479 (+)
G414007 NA other upstream 1211862 52761389 ~ 52761729 (+)
G412859 NA other upstream 2170771 51802250 ~ 51802820 (+)
camsap2a camsap2 other upstream 2835207 51059834 ~ 51153381 (+)
G415582 LOC106584099 other downstream 201697 54177929 ~ 54183430 (+)
G415808 NA other downstream 352963 54329195 ~ 54329780 (+)
G415809 NA other downstream 353848 54330080 ~ 54330480 (+)
mutyh mutyh other downstream 370304 54346481 ~ 54395448 (+)
G415946 NA other downstream 613842 54590074 ~ 54613142 (+)

Expression


Co-expression Network