LOC110524041 (LOC106613525)


Basic Information

Item Value
gene id LOC110524041
gene name LOC106613525
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 53991256 ~ 54005206 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603339.2
TATCTGCATCAAGCGAACAGAAACCACCATGCGTATTTGAGGCGACAGCTGAAGCTAGCGCTGGCGCGCGCGGAATGCGTTAGACGGCAAAAGTAGCGGTAGGCCTACTTTTATGGAAGCTGGTTAAGGATATGTAACCTCACCCATTCGACTTTGAGTCGTCTGACAGTGAACAGGGCGCACACATCTCCGTGCTTTGACAAGTTGGGATTTGTCATCTTGCCATTACTTTTGTTTTAATCCACTATTTGTACAGAAAATTCCTATGATAAAGGAGGATATTACACTGAAACAGGTAACATTTGAAGAGGACCTTGTCAATTTGTCAGAGTGGCGCAGACATGACTGAGGTGGCACAGAATGTTGCGGATGTCGCATACGACATGACTGATGTGGCACACGGCCTGACTGATGTGGCACACGGCCTGAACGATGTGGCACGCGACACGAGTGACGCGGCACCCGATGCGGATGAGAACGCGCATGGCGACGTCGCGACCGAGTGGCGCGGTCTCGGGGCACACAAAGAGGACGATGCCCCACGTGACAAGCATGACGAGGCACTTAGCGAGAATGAGGAAGAGGTTCACACCGAAGAGGACGAGGTTCACACAGAGCCTGAGGAGGACGAGGAAGATGAGGCACACGACATGAGTGAGGTGGAGCACAGGGAAAATGGCACGGCAAAGGACAAGCCGATGCAAAGGTCAAGATCGAGGAAGGACAAGAAGGATGAGGCACAAAATGGTGTGGCTCACGACATGGACAATGaaaaagaggaagaagagaaagaccAGTTACAGAACATATCTGAAGTGGCTCTGAAACAAGAGAGACTCCTGCGCTTCAAAAAGCCAGTGGCCAGGAGCTACGTGCCCCAGATTGGTAAGGCTGACGTGAAGAACAAGTTTGAGGCCATGCAGAAGGCCAGGGAGGAGCGCAACAGTAGGAGGAGCCAGGAGGAGCACCAGAAGAGGAAGGAGCAGTATGTCAAGGAGAGGGAATACAACCGCAGGAAGCAACAGATAAAAGAACTACTTGCCTccagtgatgaggaggaggaggtgaagccAGCCAAGGTAGAGAAATCCTACGTCCCCAAGATCACAGGTAGCGTGAAGGGGAAGTTTGCCGAGATGGAGAAgcagagacaggaggaggagaggaagaggatggaggaggagaggaagaagcgcGCCACCCAGGACATCATGGAGAAAGCGAAGATGCAGAAGGAGCTGGCCAAGAAAGCCGCAGAGGAGGGAGATGACAGCATCCTGGTCTGTGTGGTGCCATCGAAGCCGTCGCGACCTCCAGGCAGGATCAAGATGAACTTTGAGGACCTGGAGAAGAACCGTGAGGAAGAGCTGAAGAAGaggactgaggaggagaggaagaagcgcTACGACGAGAACAAGCAGTCCTTCCGCGAGGCCAAGCGGCGCTCGGTTGTACAGgatgaggatgaggagcaACCCACGGAGAAGGAACAGGTGACTCCTGGGAAGCTGAAGATGACGTTTGAGGAGgcggagaaggagaggcaggaaaGGCTGAGGAAGCAGGCTGAGAGGGAAGCTAAACGACGTCTGCAAGAGGAGAAGAAAGCCTTCGAAGTGGCCAAGCTGGAAATGGGCGAGGATGAGGAGGACTCACAAGGAGCTCAGGGCGAGAGAGAGGTGATCCAGCCTGGTAAACTAAGGCTGAGCTTCGAGGAGCTTGAGAAACAGAGGGTAGAGAATGAGCGCAAGGCAGCAGAGGCAGAGTACAAGAGAcgaatggaagaggagaggagggctttcGCCGAGGCCAGGAAAAGCATGATagtggatgatgatgatgaggtgtTCCTGGCCATGCTGAACCTGGAGGGCAGCAAGCCAGGGAAGCTGTGCGTCAGCTTCGAGGACAAGGAGCGTCAGAGGAGAGAGGCGGAGGAGAAGAAAGCAGAGGAGGAGGCCAagaggaggctggaggaggagaagaggctcTTTGCAGAGGCCCGCAAGAATATGGTGCTAGACGAGGAAGAGGAAGGGATGTTCAAGAGCGAGTCCCAGGAAGCATTGCACCCTGGGAAACTAGAGATGAACTTCGAGGAGCTGCTGAAGCAGAAGGAGGAAGCCGATAGGAAGCGCAAGGTGGAGGCGCGCAAAAAAAAAATGGAGCAGGAGAAACTGGAGTTTGAGCAGCTCAGACAAGAGATGGGAGAGGATGAAGTGAATGAGAGCTCTGATACAGTGAGTAAGGAGTATGAGGAGCTGAAGAAACTCAAGAGGACCGGCTCCATCCAGGCCAAGAACCTCAAGTCCAAGTTTGAGAAGATCAAGCAGTTGAAAGACGAGGAGATCCAGAAAACGATTGAGGACGTGAGAGCAAAGAGAAAGGCCGTAGACGAGGAAATcaaagagagggaagaagagcgGGTCCAGGAGGAGGATGATGAAGGCAAAAAGGACACAGAGAAGGGGGCTGAGGAGGCTCCGTTCAGACAGAAGGTGGACATGCGCGCACGGTTCGAACAAATGGCCAAagccagagagggggaggagaggaaaagggtgGAGGAACAGAAACTGCAGAGGATGCAGTTCGAGCAGCAAGAGATTGACGCTGCTCTCCAAAAAAAaagggaagatgaggaggaggaagagggaagcaTCATCAATGGCTCGGCAGCctatgaggatgaggaggaccaCGCCAGGTCGGGGGCTCCGTGGTTTAAGAAGCCCCTGAAGAACCAATCGGTGGTGGATGCCGAGCCAGTGCGGTTCACGGTGAAGATCACTGGGGAGCCCAAGCCGGAGGTGACCTGGTGGTTTGAGGGGAATATGCTCCAGGACTGTGAGGACTATCAgtacatagagagaggggagacattCTGCCTCTACCTGCCAGAGACCTTCCCAGAGGACGAGGGAGAGtacatgtgcaaagctgtcaacagcAGAGGCACCGCTGCCAGCACTTGTATCCTAACGATAGAAAGTAAGCAATCGTCCGTCTGACTGCCACTGCATGCC
>XM_021603338.2
TATCTGCATCAAGCGAACAGAAACCACCATGCGTATTTGAGGCGACAGCTGAAGCTAGCGCTGGCGCGCGCGGAATGCGTTAGACGGCAAAAGTAGCGGTAGGCCTACTTTTATGGAAGCTGGTTAAGGATATGTAACCTCACCCATTCGACTTTGAGTCGTCTGACAGTGAACAGGGCGCACACATCTCCGTGCTTTGACAAGTTGGGATTTGTCATCTTGCCATTACTTTTGTTTTAATCCACTATTTGTACAGAAAATTCCTATGATAAAGGAGGATATTACACTGAAACAGGTAACATTTGAAGAGGACCTTGTCAATTTGTCAGAGTGGCGCAGACATGACTGAGGTGGCACAGAATGTTGCGGATGTCGCATACGACATGACTGATGTGGCACACGGCCTGACTGATGTGGCACACGGCCTGAACGATGTGGCACGCGACACGAGTGACGCGGCACCCGATGCGGATGAGAACGCGCATGGCGACGTCGCGACCGAGTGGCGCGGTCTCGGGGCACACAAAGAGGACGATGCCCCACGTGACAAGCATGACGAGGCACTTAGCGAGAATGAGGAAGAGGTTCACACCGAAGAGGACGAGGTTCACACAGAGCCTGAGGAGGACGAGGAAGATGAGGCACACGACATGAGTGAGGTGGAGCACAGGGAAAATGGCACGGCAAAGGACAAGCCGATGCAAAGGTCAAGATCGAGGAAGGACAAGAAGGATGAGGCACAAAATGGTGTGGCTCACGACATGGACAATGaaaaagaggaagaagagaaagaccAGTTACAGAACATATCTGAAGTGGCTCTGAAACAAGAGAGACTCCTGCGCTTCAAAAAGCCAGTGGCCAGGAGCTACGTGCCCCAGATTGGTAAGGCTGACGTGAAGAACAAGTTTGAGGCCATGCAGAAGGCCAGGGAGGAGCGCAACAGTAGGAGGAGCCAGGAGGAGCACCAGAAGAGGAAGGAGCAGTATGTCAAGGAGAGGGAATACAACCGCAGGAAGCAACAGATAAAAGAACTACTTGCCTccagtgatgaggaggaggaggtgaagccAGCCAAGGTAGAGAAATCCTACGTCCCCAAGATCACAGGTAGCGTGAAGGGGAAGTTTGCCGAGATGGAGAAgcagagacaggaggaggagaggaagaggatggaggaggagaggaagaagcgcGCCACCCAGGACATCATGGAGAAAGCGAAGATGCAGAAGGAGCTGGCCAAGAAAGCCGCAGAGGAGGGAGATGACAGCATCCTGGTCTGTGTGGTGCCATCGAAGCCGTCGCGACCTCCAGGCAGGATCAAGATGAACTTTGAGGACCTGGAGAAGAACCGTGAGGAAGAGCTGAAGAAGaggactgaggaggagaggaagaagcgcTACGACGAGAACAAGCAGTCCTTCCGCGAGGCCAAGCGGCGCTCGGTTGTACAGgatgaggatgaggagcaACCCACGGAGAAGGAACAGGTGACTCCTGGGAAGCTGAAGATGACGTTTGAGGAGgcggagaaggagaggcaggaaaGGCTGAGGAAGCAGGCTGAGAGGGAAGCTAAACGACGTCTGCAAGAGGAGAAGAAAGCCTTCGAAGTGGCCAAGCTGGAAATGGGCGAGGATGAGGAGGACTCACAAGGAGCTCAGGGCGAGAGAGAGGTGATCCAGCCTGGTAAACTAAGGCTGAGCTTCGAGGAGCTTGAGAAACAGAGGGTAGAGAATGAGCGCAAGGCAGCAGAGGCAGAGTACAAGAGAcgaatggaagaggagaggagggctttcGCCGAGGCCAGGAAAAGCATGATagtggatgatgatgatgaggtgtTCCTGGCCATGCTGAACCTGGAGGGCAGCAAGCCAGGGAAGCTGTGCGTCAGCTTCGAGGACAAGGAGCGTCAGAGGAGAGAGGCGGAGGAGAAGAAAGCAGAGGAGGAGGCCAagaggaggctggaggaggagaagaggctcTTTGCAGAGGCCCGCAAGAATATGAGCCCCCTGGATCGGGAAAAATCTAAGACTTCATATCAAGATGGAGAAGTGCTAGACGAGGAAGAGGAAGGGATGTTCAAGAGCGAGTCCCAGGAAGCATTGCACCCTGGGAAACTAGAGATGAACTTCGAGGAGCTGCTGAAGCAGAAGGAGGAAGCCGATAGGAAGCGCAAGGTGGAGGCGCGCAAAAAAAAAATGGAGCAGGAGAAACTGGAGTTTGAGCAGCTCAGACAAGAGATGGGAGAGGATGAAGTGAATGAGAGCTCTGATACAGTGAGTAAGGAGTATGAGGAGCTGAAGAAACTCAAGAGGACCGGCTCCATCCAGGCCAAGAACCTCAAGTCCAAGTTTGAGAAGATCAAGCAGTTGAAAGACGAGGAGATCCAGAAAACGATTGAGGACGTGAGAGCAAAGAGAAAGGCCGTAGACGAGGAAATcaaagagagggaagaagagcgGGTCCAGGAGGAGGATGATGAAGGCAAAAAGGACACAGAGAAGGGGGCTGAGGAGGCTCCGTTCAGACAGAAGGTGGACATGCGCGCACGGTTCGAACAAATGGCCAAagccagagagggggaggagaggaaaagggtgGAGGAACAGAAACTGCAGAGGATGCAGTTCGAGCAGCAAGAGATTGACGCTGCTCTCCAAAAAAAaagggaagatgaggaggaggaagagggaagcaTCATCAATGGCTCGGCAGCctatgaggatgaggaggaccaCGCCAGGTCGGGGGCTCCGTGGTTTAAGAAGCCCCTGAAGAACCAATCGGTGGTGGATGCCGAGCCAGTGCGGTTCACGGTGAAGATCACTGGGGAGCCCAAGCCGGAGGTGACCTGGTGGTTTGAGGGGAATATGCTCCAGGACTGTGAGGACTATCAgtacatagagagaggggagacattCTGCCTCTACCTGCCAGAGACCTTCCCAGAGGACGAGGGAGAGtacatgtgcaaagctgtcaacagcAGAGGCACCGCTGCCAGCACTTGTATCCTAACGATAGAAACTGAGGACTACTGATGCTTTCCTTTTTCTGGaactttccctgtctctctcactctttttgtATAATGTAATATCTCATGTTAGAGCCAAAAAGAGGAGGAAACAGCAGTATGCTAGCCATTCCTTCTAGGGATA

Function

NR:

description
nexilin-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603339.2 False 3026 mRNA 0.54 13 53991256 54004904
XM_021603338.2 True 3173 mRNA 0.53 15 53991256 54005206

Neighbor

gene id symbol gene type direction distance location
LOC110524039 LOC106613527 coding upstream 15024 53973591 ~ 53976232 (+)
LOC110524040 LOC106613524 coding upstream 29433 53950830 ~ 53961823 (+)
LOC110524036 LOC106573996 coding upstream 50424 53929266 ~ 53940832 (+)
LOC110524034 LOC106613518 coding upstream 67368 53827955 ~ 53923888 (+)
LOC110524032 LOC106613514 coding upstream 189698 53766770 ~ 53801558 (+)
LOC118964527 NA coding downstream 11405 54016607 ~ 54018708 (+)
LOC110524043 NA coding downstream 14739 54019945 ~ 54024504 (+)
zgc:153738 LOC106613531 coding downstream 43833 54049039 ~ 54057375 (+)
obscna LOC106613530 coding downstream 78149 54083355 ~ 54168958 (+)
mutyh mutyh coding downstream 341275 54346481 ~ 54395448 (+)
G415144 NA non-coding upstream 41608 53948635 ~ 53949648 (+)
G415189 NA non-coding upstream 164037 53826979 ~ 53827219 (+)
G415182 NA non-coding upstream 174164 53816853 ~ 53817092 (+)
G415117 NA non-coding upstream 263646 53727409 ~ 53727610 (+)
G415112 NA non-coding upstream 273093 53717793 ~ 53718163 (+)
G415467 NA non-coding downstream 2681 54007887 ~ 54008098 (+)
G415474 NA non-coding downstream 5385 54010591 ~ 54010880 (+)
G415543 NA non-coding downstream 72430 54077636 ~ 54077904 (+)
G415547 NA non-coding downstream 74263 54079469 ~ 54079672 (+)
G414488 LOC106562530 other upstream 878749 53112183 ~ 53112507 (+)
G414041 NA other upstream 1211777 52778517 ~ 52779479 (+)
G414007 NA other upstream 1229527 52761389 ~ 52761729 (+)
G412859 NA other upstream 2188436 51802250 ~ 51802820 (+)
camsap2a camsap2 other upstream 2852872 51059834 ~ 51153381 (+)
G415582 LOC106584099 other downstream 172723 54177929 ~ 54183430 (+)
G415808 NA other downstream 323989 54329195 ~ 54329780 (+)
G415809 NA other downstream 324874 54330080 ~ 54330480 (+)
G415946 NA other downstream 584868 54590074 ~ 54613142 (+)

Expression


Co-expression Network