LOC118964527


Basic Information

Item Value
gene id LOC118964527
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54016607 ~ 54018708 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051583.1
GAAACAGATAGTTGTTTAGTGTAGCTGGTTAGCTAGCAACATTTTCGTTTAGGAATTTGTAATCCATGACAAATTATGTGTGTACGGGTTGAACAAATTGCTGCATCGCTTGTGCGGGAATTTCTCTGTCGGAAGGTCGCTTACAGAGGTTGTCTGCCCATCACATTGTACATTATCATCATTTGAAGCATCAGATACTCACCCCACAACTACCCAGAGAAGTATCTGGAGCCATAAACGTAGCCAGAGCCAGCAGGACCAACAGCCTGTACATTCCTTCCTAGATAATGACATCTCCACTAAGAGGGAATCCTTTTCAGACAGAAATAGTATTGTCACCTCAGAGAGTACTCATAAGAAGAAAACAAGCCGCCTCAGACAAGGAATCCAATAGATAATGCCAGACTCGACACCCTAATCTTCTTCTGGTAAATGATGAAGACAGCAAAAACAGCAGAGATGGGCCTCCATTGATTGTCCAGTCACAGAGAATGGTTACGGGGCTGACCGAGCTCTCCCCTGCTGAGAGAAAGCCAACAGCCACGTAGCACACCGGGGAAAGGAAGTGATGAAGATGGATATGGGTTTGAGAGAGTAGGAAAAAACAAGTAAGGAGCGTTGAGTTTCCTTCAACTGTTTTCATGATCAGAGAATTTCAGATTTCTTACTGTTGCCTAtttaatatatttgtatttacacTGCTCAAATAAATacagggaacacttaaacaacacaatgtaactccaagtcaatcacacttctgtgaaatcaaactgtcca
>TU470893
CATAGAAACAGATAGTTGTTTAGTGTAGCTGGTTAGCTAGCAACATTTTCGTTTAGGAATTTGTAATCCATGACAAATTATGTGTGTACGGGTTGAACAAATTGCTGCATCGCTTGTGCGGGAATTTCTCTGTCGGAAGGTCGCTTACAGAGGTTGTCTGCCCATCACATTGTACATTATCATCATTTGAAGCATCAGATACTCACCCCACAACTACCCAGAGAAGTATCTGGAGCCATAAACGTAGCCAGAGCCAGCAGGACCAACAGCCTGTACATTCCTTCCTAGATAATGACATCTCCACTAAGAGGGAATCCTTTTCAGACAGAAATAGTATTGTCACCTCAGAGAGTACTCATAAGAAGAAAACAAGCCGCCTCAGACAAGGAATCCAATAGATAATGCCAGACTCGACACCCTAATCTTCTTCTGGTAAATGATGAAGACAGCAAAAACAGCAGAGATGGGCCTCCATTGATTGTCCAGTCACAGAGAATGGTTACGGGGCTGACCGAGCTCTCCCCTGCTGAGAGAAAGCCAACAGCCACGTAGCACACCGGGGAAAGGAAGTGATGAAGATGGATATGGGTTTGAGAGAGTAGGAAAAAACAAGTAAGGAGCGTTGAGTTTCCTTCAACTGTTTTCATGATCAGAGAATTTCAGATTTCTTACTGTTGCCTAtttaatatatttgtatttacacTGCTCAAATAAATacagggaacacttaaacaacacaatgtaactccaagtcaatcacacttctgtgaaatcaaactgtccacttaagaAGCAACActaattgacaatacatttcacatgctgttgtgcaaatggcatagacaacaggtggaaattataggcaattagcaagacaccccc

Function

NR:

description
PREDICTED: protein FAM188B isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051583.1 False 780 mRNA 0.42 3 54016611 54018610
TU470893 True 882 lncRNA 0.42 3 54016607 54018708

Neighbor

gene id symbol gene type direction distance location
LOC110524041 LOC106613525 coding upstream 11405 53991256 ~ 54005206 (+)
LOC110524039 LOC106613527 coding upstream 40379 53973591 ~ 53976232 (+)
LOC110524040 LOC106613524 coding upstream 54788 53950830 ~ 53961823 (+)
LOC110524036 LOC106573996 coding upstream 75779 53929266 ~ 53940832 (+)
LOC110524034 LOC106613518 coding upstream 92723 53827955 ~ 53923888 (+)
LOC110524043 NA coding downstream 1335 54019945 ~ 54024504 (+)
zgc:153738 LOC106613531 coding downstream 30429 54049039 ~ 54057375 (+)
obscna LOC106613530 coding downstream 64745 54083355 ~ 54168958 (+)
mutyh mutyh coding downstream 327871 54346481 ~ 54395448 (+)
LOC110524051 LOC106613536 coding downstream 355594 54374204 ~ 54378738 (+)
G415474 NA non-coding upstream 5731 54010591 ~ 54010880 (+)
G415467 NA non-coding upstream 8513 54007887 ~ 54008098 (+)
G415144 NA non-coding upstream 66963 53948635 ~ 53949648 (+)
G415189 NA non-coding upstream 189392 53826979 ~ 53827219 (+)
G415182 NA non-coding upstream 199519 53816853 ~ 53817092 (+)
G415543 NA non-coding downstream 59026 54077636 ~ 54077904 (+)
G415547 NA non-coding downstream 60859 54079469 ~ 54079672 (+)
G415550 NA non-coding downstream 63015 54081625 ~ 54081866 (+)
G415552 LOC106613532 non-coding downstream 150507 54169117 ~ 54175086 (+)
G415748 NA non-coding downstream 247453 54266063 ~ 54266343 (+)
G414488 LOC106562530 other upstream 904104 53112183 ~ 53112507 (+)
G414041 NA other upstream 1237132 52778517 ~ 52779479 (+)
G414007 NA other upstream 1254882 52761389 ~ 52761729 (+)
G412859 NA other upstream 2213791 51802250 ~ 51802820 (+)
camsap2a camsap2 other upstream 2878227 51059834 ~ 51153381 (+)
G415582 LOC106584099 other downstream 159319 54177929 ~ 54183430 (+)
G415808 NA other downstream 310585 54329195 ~ 54329780 (+)
G415809 NA other downstream 311470 54330080 ~ 54330480 (+)
G415946 NA other downstream 571464 54590074 ~ 54613142 (+)

Expression


Co-expression Network