Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC118964527 |
| gene name | NA |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 54016607 ~ 54018708 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: protein FAM188B isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XR_005051583.1 | False | 780 | mRNA | 0.42 | 3 | 54016611 | 54018610 |
| TU470893 | True | 882 | lncRNA | 0.42 | 3 | 54016607 | 54018708 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110524041 | LOC106613525 | coding | upstream | 11405 | 53991256 ~ 54005206 (+) |
| LOC110524039 | LOC106613527 | coding | upstream | 40379 | 53973591 ~ 53976232 (+) |
| LOC110524040 | LOC106613524 | coding | upstream | 54788 | 53950830 ~ 53961823 (+) |
| LOC110524036 | LOC106573996 | coding | upstream | 75779 | 53929266 ~ 53940832 (+) |
| LOC110524034 | LOC106613518 | coding | upstream | 92723 | 53827955 ~ 53923888 (+) |
| LOC110524043 | NA | coding | downstream | 1335 | 54019945 ~ 54024504 (+) |
| zgc:153738 | LOC106613531 | coding | downstream | 30429 | 54049039 ~ 54057375 (+) |
| obscna | LOC106613530 | coding | downstream | 64745 | 54083355 ~ 54168958 (+) |
| mutyh | mutyh | coding | downstream | 327871 | 54346481 ~ 54395448 (+) |
| LOC110524051 | LOC106613536 | coding | downstream | 355594 | 54374204 ~ 54378738 (+) |
| G415474 | NA | non-coding | upstream | 5731 | 54010591 ~ 54010880 (+) |
| G415467 | NA | non-coding | upstream | 8513 | 54007887 ~ 54008098 (+) |
| G415144 | NA | non-coding | upstream | 66963 | 53948635 ~ 53949648 (+) |
| G415189 | NA | non-coding | upstream | 189392 | 53826979 ~ 53827219 (+) |
| G415182 | NA | non-coding | upstream | 199519 | 53816853 ~ 53817092 (+) |
| G415543 | NA | non-coding | downstream | 59026 | 54077636 ~ 54077904 (+) |
| G415547 | NA | non-coding | downstream | 60859 | 54079469 ~ 54079672 (+) |
| G415550 | NA | non-coding | downstream | 63015 | 54081625 ~ 54081866 (+) |
| G415552 | LOC106613532 | non-coding | downstream | 150507 | 54169117 ~ 54175086 (+) |
| G415748 | NA | non-coding | downstream | 247453 | 54266063 ~ 54266343 (+) |
| G414488 | LOC106562530 | other | upstream | 904104 | 53112183 ~ 53112507 (+) |
| G414041 | NA | other | upstream | 1237132 | 52778517 ~ 52779479 (+) |
| G414007 | NA | other | upstream | 1254882 | 52761389 ~ 52761729 (+) |
| G412859 | NA | other | upstream | 2213791 | 51802250 ~ 51802820 (+) |
| camsap2a | camsap2 | other | upstream | 2878227 | 51059834 ~ 51153381 (+) |
| G415582 | LOC106584099 | other | downstream | 159319 | 54177929 ~ 54183430 (+) |
| G415808 | NA | other | downstream | 310585 | 54329195 ~ 54329780 (+) |
| G415809 | NA | other | downstream | 311470 | 54330080 ~ 54330480 (+) |
| G415946 | NA | other | downstream | 571464 | 54590074 ~ 54613142 (+) |
