LOC110524044


Basic Information

Item Value
gene id LOC110524044
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54034503 ~ 54048020 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473526.2
GTGTACAAAAATCACTCAATAAATATTCGATTCGTCATCATTACTCCATTTGGGCCTACTCTGTAACAAATTCATAAAAATAGGCGACATGTATCAACACTCTCTTAATTGTCCAAGACCACCAAACCACCTGATTTTCTTACTTTAAAAACAGTTAGAAGAAAAAAATGAGATCTTGAACTCAAGTGCTCGAAACAGTCCGAGGGCTGTTCTTGAAAGCGCATTCTCTGCTGCGCTTAGGCAGTCACAAGACTTGGACATCCATGAACAAAAACAAAGACACTACAATTAGCCgacataggtcagggtcaagccCATATGCCACTAAACAACTCTGCATTGAACAGGTCTTGCAATTTTGGAAACTTATTTCACCCGCCGTTGCGCGCTTCGGATGATATTTTCCCCAATGGAAATCTCAGCATTAATCCTTCCCATCCAAACTTGACATTGCAACATTGTTTTACCTAAGCAGGAATAAGAAGTGAAGTGGTGTTCTTAGCCCACTTTCAGTGATGGGTTTGGACGTAAAGGAGGGGCGCATGCCAAAGGTAGCGACCACCATGGAATAAATTAAACCAAAGATATCAACAGTTGCCTTCCACCCACTCGAAATCGATTGTATTAGAACCTCGCTGAACGTATAAAACGGGACGTATGATTTCAAGACCGGCTGCAGACAACGGAATCTTCGCTCAATAAGCTACACAACCGACAACGCCTAGAGAGATTTGATACAGACAACTCGTGTCCACTTTTCAGGACATAAGGATCCTTTAGTAACTTAAATCAGAAAAGCCATGCAGGCAGAAAGGAAATGGCACATACTTTTGAGTATAATCCTTATGCTGATCACCTCGAGCCAGTGCATGGACAGCAAGGAAGTGAAGCAGAAAGGGAGAAGGACCCTGCTGGACCTTATTTTACAGGTTATCGGAGACAGCCAATCAGGGGACAAGCCTTCAGTCTCCAGGCGCTATAACAGTGGCCTCTTCCCTACAGCCCAAGAGATGAGGTTCTCCTCTGGAGAAAAGCCTTTATATGTTCCTAGGCTGGATAACAGTAGACCCATAGATATTGTCCCAAGAGATGTAAACCTGAAAGACAAGTTCATAAAGCATTTCACAGGACCAGTCAAGTTCTCATCGGAATGTAGAACACATTTTCATCGACTCTATCACAACACAAGGGATTGTTCAAAACCAGCATactacaaaagatGTGCAAGATTGCTAACACGGCTAGCAATGAGTCCACTCTGCACACAATTGTAGACATTGCATgttcaAAATATTGAGAGGGGTCTATGTTTTGCCAAGGAAGTGCCTTCAATTTGCAGCAGTCACATTAAGAACATAGTATTGTAATTGTTTatagtatttttatttttgttgttgatactgtatatgaaaatgttgacagatttgaTTGGTTTTATGAAATAGATTAGCATTTTATTTTCATGTATCATGTATTTTTAAGAAAACCTTAATTTAATATTGAATGCACCTATTTATTGAAATGTATATAATTATTCACAATAATTCTGAAATATTCAATTATTTTTCTTAAAGTTCTCATCTGATGAAGTGTGTGAATTCATCTCACTAAATATTATTTGCTTTGTCAATATTACATTTTTGAGACGGTCCCACCATGGTCGTTTCTATATGTCTTTCACTGTCATTGTCTACATTGCATTTAATTTGGCACTTGAACGATTTCACACAATGAAAACATATTGAAGGATGACGATGGTAATAATGCACTGCAGTACtgaacaataaaaaaatattcaagcACAGCATATTTGCAATTATTATAGAAGAGCATGTTGAGGGAACCATTTCTGAGGTTTCTGCTGTTAGGACACTCAATAAGGAAGCTGCAAGCAGGGCTGtatcccaaatgacatcctattccctatagtctactacttttgaccagaacaccatgggccctggtcaaaagtagtgcacgacaaAGGAAAATGTCTACCAATTGGATGATACACCATAATCCAAACATCCGCatgtgacagacacacacacaactatattTCACTCAAGAGTATGCTGTCGGGAAGACCATGAGGATTGAGAAAAGCAATCGTTCAGAGGGTTATTCCAATTCCGTCTGCACCTCATAACCCCTACAATTTCGGAAAAACAACACAAGTTTTAGGGAAAAGAGTGCATGCAAAATCCTTTCCTCAATGTCTTAGCAAAGCCTATATTGAATTTCCCAATCTGTAGCTGACTGGGTTTCAAAATCGCTGGCAAACTAAATTTGTCCCTTGAGAACCCAAACGCATTCCAATCTTGGACTGTTGGACAACAGAAAGTGAAGCAATTCAAACTCGACAAAACCAAATGGACTGGAAAAGAGTCTCCTTTTTGATCCTGTTCTGTTTCAAATTGTAGGGTTCTTGACAGAATTGTTTACTTGGTCTTTGGGCCAGGATGCATCTGACCTTTATTTGAACGTGCCTTTCACATTGACCCTCATGCACCTGGTATTAAACGTCCAGTGATATGTCTGGCAGTTACAATAACTTAACAAGTGAGATCGGTGAACAACAACAAATTTTTTTTATATTATTATGGCTCAGGGATCCATGAGTTCAGTTATCGGTAGAAAGATGGAACACCCCTCCCTTTTGGTGCATTGTGGACAATGACATGATCGCTGGTATAACATGCTCTTGCAGTTGCCTGCTCAGACATCACAAGAACATTAGAAAGAACATTAGTGTTTATTTTCTGGTGTTATCCAGGATGTGGCCTCTGTAAAGGTCCTAAATGTTGGTATTGTCATTTAGGACTCTTGCACAAGAacgacaaaacaacaacaaatgaaaGGAATAGCTAGAGACTTTAGCAATTGAAGAAAAAAGAAGCTGAGACTTGTTGTCATTGGAATTTTGAATATAAATACATCTAGAAATTAAAGGGACATTGCACCCCAAAACCAAGTTTGTCTGGTATTGCCGAGAAATGAAAACATATTTATAGCATCTATAACAGGAATGTCCTTACAAAATAAACAGTATGATAACTTTTTTATATATTCCTATTGCTATCTTCTCCTATCGTCTCGTTCAGACACGCCTGGGGAATAGTTGATCGTCCATTGTTtttattaacgctacagcatacaattacattctagatgattctgtacttccaactttgtggcaacagtttgaggaagtcc
>XR_002473527.2
GTGTACAAAAATCACTCAATAAATATTCGATTCGTCATCATTACTCCATTTGGGCCTACTCTGTAACAAATTCATAAAAATAGGCGACATGTATCAACACTCTCTTAATTGTCCAAGACCACCAAACCACCTGATTTTCTTACTTTAAAAACAGTTAGAAGAAAAAAATGAGATCTTGAACTCAAGTGCTCGAAACAGTCCGAGGGCTGTTCTTGAAAGCGCATTCTCTGCTGCGCTTAGGCAGTCACAAGACTTGGACATCCATGAACAAAAACAAAGACACTACAATTAGCCgacataggtcagggtcaagccCATATGCCACTAAACAACTCTGCATTGAACAGGTCTTGCAATTTTGGAAACTTATTTCACCCGCCGTTGCGCGCTTCGGATGATATTTTCCCCAATGGAAATCTCAGCATTAATCCTTCCCATCCAAACTTGACATTGCAACATTGTTTTACCTAAGCAGGAATAAGAAGTGAAGTGGTGTTCTTAGCCCACTTTCAGTGATGGGTTTGGACGTAAAGGAGGGGCGCATGCCAAAGGTAGCGACCACCATGGAATAAATTAAACCAAAGATATCAACAGTTGCCTTCCACCCACTCGAAATCGATTGTATTAGAACCTCGCTGAACGTATAAAACGGGACGTATGATTTCAAGACCGGCTGCAGACAACGGAATCTTCGCTCAATAAGCTACACAACCGACAACGCCTAGAGAGATTTGATACAGACAACTCGTGTCCACTTTTCAGGACATAAGGATCCTTTAGTAACTTAAATCAGAAAAGCCATGCAGGCAGAAAGGAAATGGCACATACTTTTGAGTATAATCCTTATGCTGATCACCTCGAGCCAGTGCATGGACAGCAAGGAAGTGAAGCAGAAAGGGAGAAGGACCCTGCTGGACCTTATTTTACAGGTTATCGGAGACAGCCAATCAGGGGACAAGCCTTCAGTCTCCAGGCGCTATAACAGTGGCCTCTTCCCTACAGCCCAAGAGATGAGGTTCTCCTCTGGAGAAAAGCCTTTATATGTTCCTAGGCTGGATAACAGTAGACCCATAGGAAATGGCACACTTTATGATTTGAAGAGATATTGTCCCAAGAGATGTAAACCTGAAAGACAAGTTCATAAAGCATTTCACAGGACCAGTCAAGTTCTCATCGGAATGTAGAACACATTTTCATCGACTCTATCACAACACAAGGGATTGTTCAAAACCAGCATactacaaaagatGTGCAAGATTGCTAACACGGCTAGCAATGAGTCCACTCTGCACACAATTGTAGACATTGCATgttcaAAATATTGAGAGGGGTCTATGTTTTGCCAAGGAAGTGCCTTCAATTTGCAGCAGTCACATTAAGAACATAGTATTGTAATTGTTTatagtatttttatttttgttgttgatactgtatatgaaaatgttgacagatttgaTTGGTTTTATGAAATAGATTAGCATTTTATTTTCATGTATCATGTATTTTTAAGAAAACCTTAATTTAATATTGAATGCACCTATTTATTGAAATGTATATAATTATTCACAATAATTCTGAAATATTCAATTATTTTTCTTAAAGTTCTCATCTGATGAAGTGTGTGAATTCATCTCACTAAATATTATTTGCTTTGTCAATATTACATTTTTGAGACGGTCCCACCATGGTCGTTTCTATATGTCTTTCACTGTCATTGTCTACATTGCATTTAATTTGGCACTTGAACGATTTCACACAATGAAAACATATTGAAGGATGACGATGGTAATAATGCACTGCAGTACtgaacaataaaaaaatattcaagcACAGCATATTTGCAATTATTATAGAAGAGCATGTTGAGGGAACCATTTCTGAGGTTTCTGCTGTTAGGACACTCAATAAGGAAGCTGCAAGCAGGGCTGtatcccaaatgacatcctattccctatagtctactacttttgaccagaacaccatgggccctggtcaaaagtagtgcacgacaaAGGAAAATGTCTACCAATTGGATGATACACCATAATCCAAACATCCGCatgtgacagacacacacacaactatattTCACTCAAGAGTATGCTGTCGGGAAGACCATGAGGATTGAGAAAAGCAATCGTTCAGAGGGTTATTCCAATTCCGTCTGCACCTCATAACCCCTACAATTTCGGAAAAACAACACAAGTTTTAGGGAAAAGAGTGCATGCAAAATCCTTTCCTCAATGTCTTAGCAAAGCCTATATTGAATTTCCCAATCTGTAGCTGACTGGGTTTCAAAATCGCTGGCAAACTAAATTTGTCCCTTGAGAACCCAAACGCATTCCAATCTTGGACTGTTGGACAACAGAAAGTGAAGCAATTCAAACTCGACAAAACCAAATGGACTGGAAAAGAGTCTCCTTTTTGATCCTGTTCTGTTTCAAATTGTAGGGTTCTTGACAGAATTGTTTACTTGGTCTTTGGGCCAGGATGCATCTGACCTTTATTTGAACGTGCCTTTCACATTGACCCTCATGCACCTGGTATTAAACGTCCAGTGATATGTCTGGCAGTTACAATAACTTAACAAGTGAGATCGGTGAACAACAACAAATTTTTTTTATATTATTATGGCTCAGGGATCCATGAGTTCAGTTATCGGTAGAAAGATGGAACACCCCTCCCTTTTGGTGCATTGTGGACAATGACATGATCGCTGGTATAACATGCTCTTGCAGTTGCCTGCTCAGACATCACAAGAACATTAGAAAGAACATTAGTGTTTATTTTCTGGTGTTATCCAGGATGTGGCCTCTGTAAAGGTCCTAAATGTTGGTATTGTCATTTAGGACTCTTGCACAAGAacgacaaaacaacaacaaatgaaaGGAATAGCTAGAGACTTTAGCAATTGAAGAAAAAAGAAGCTGAGACTTGTTGTCATTGGAATTTTGAATATAAATACATCTAGAAATTAAAGGGACATTGCACCCCAAAACCAAGTTTGTCTGGTATTGCCGAGAAATGAAAACATATTTATAGCATCTATAACAGGAATGTCCTTACAAAATAAACAGTATGATAACTTTTTTATATATTCCTATTGCTATCTTCTCCTATCGTCTCGTTCAGACACGCCTGGGGAATAGTTGATCGTCCATTGTTtttattaacgctacagcatacaattacattctagatgattctgtacttccaactttgtggcaacagtttgaggaagtcc

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473526.2 False 3216 mRNA 0.39 6 54034503 54048020
XR_002473527.2 True 3244 mRNA 0.39 7 54034503 54048020

Neighbor

gene id symbol gene type direction distance location
LOC110524038 LOC106613526 coding downstream 59385 53961942 ~ 53989222 (-)
prrg1 LOC106613522 coding downstream 88901 53940943 ~ 53945602 (-)
ccdc181 ccdc181 coding downstream 105767 53922807 ~ 53928736 (-)
LOC110524031 LOC106613515 coding downstream 284235 53746858 ~ 53750268 (-)
LOC118964619 LOC106613459 coding downstream 288940 53740644 ~ 53745563 (-)
LOC110524046 LOC106613532 coding upstream 120937 54168957 ~ 54193614 (-)
LOC110522970 LOC106613460 coding upstream 152170 54200190 ~ 54249220 (-)
LOC110522871 LOC106613983 coding upstream 249773 54297793 ~ 54301057 (-)
LOC110522971 NA coding upstream 253960 54301980 ~ 54305832 (-)
LOC110524047 LOC106613533 coding upstream 262568 54310588 ~ 54319469 (-)
G415477 NA non-coding downstream 22352 54011946 ~ 54012151 (-)
G415475 NA non-coding downstream 23465 54010833 ~ 54011038 (-)
G415468 NA non-coding downstream 26025 54008139 ~ 54008478 (-)
G415464 nexn non-coding downstream 28830 54002448 ~ 54005673 (-)
G415460 NA non-coding downstream 39942 53994019 ~ 53994561 (-)
G415540 NA non-coding upstream 26902 54074922 ~ 54075202 (-)
G415546 NA non-coding upstream 31163 54079183 ~ 54079454 (-)
G415551 NA non-coding upstream 34297 54082317 ~ 54082529 (-)
G415649 LOC106613530 non-coding upstream 65026 54113046 ~ 54116394 (-)
G415652 NA non-coding upstream 65954 54113974 ~ 54117277 (-)
G415420 NA other downstream 141597 53890760 ~ 53892906 (-)
G415256 LOC106613513 other downstream 415639 53617683 ~ 53618864 (-)
G412613 NA other downstream 2421941 51558378 ~ 51612562 (-)
G412372 NA other downstream 2657373 51373465 ~ 51377130 (-)
G416110 NA other upstream 315266 54363286 ~ 54392411 (-)
LOC110524071 LOC106613554 other upstream 1093295 55123617 ~ 55181458 (-)
G417527 NA other upstream 1560815 55608835 ~ 55609730 (-)
LOC110522975 LOC106613586 other upstream 2660778 56703896 ~ 56711499 (-)
G418830 NA other upstream 2786006 56834026 ~ 56834595 (-)

Expression


Co-expression Network