LOC110522970 (LOC106613460)


Basic Information

Item Value
gene id LOC110522970
gene name LOC106613460
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54200190 ~ 54249220 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021601401.2
cgTCATTCGAAGCGCGGAAAGCCTCTGAGCAGCAGCAGCCGCAGCCCGGTGAGCTTCTCCTCGTCCTCACGTTGTGCCACTTCTTATCTTACAATTCTAACTGGTATGTCACTGTGAAAAAGAAATACTGTAGCCAAGCTTACATTTCACTGCAGATATACTTGGAAATAATCTTGACCTTTTGCAAGCGCGCGTTTCTCTTCTGCTCGGACGGAATAAAGTCTCGACCGTCGCTGACATTGTAACTAGAGAAAGTGTTCGTTGTGTGACTGAAACAACTCCAAGACAGCGTTTAACTAGCCCTATGAGAATGGACTCACAGTGAAGTTATTCTACATCATCTTCAAATCACACCAACACTCAGCCCCTCCCCCTGACCAGTCCCTCCCTCTATAGGACTAAGGGAGGCGTGGATTGGATGGACCTCCACCGTCCCTCTTTTAAGATGGACAGCTCCTCCTACCTGCCCAGTCCCCTGGCCTCCCCAGCCCTGATGGTGCTGGCCTCCACAGCCGAGGCTGGCCACGATTCCTCCATCCCCTGCCAGGCCCCACGGCCTTTCGGTGTCCCCATCTCCGAGAAGGACCTccacctccccttcccctccggCTCCTACACATTTGCCTCCATGTACCACCGCCAGGGGCCCGTCTCCAGCCATGGCACCTTCCCCGCCAGAGActtccctgcctccctgctccacctccacccccagtTCCACCCCCCCAACCTGGACTGCTCATCTCTAGAGATGCTCAACCACAGCGGGGTAGGCGCCTTCAGACCCTTCTCCTCCCTGCCTGAGGAGAGGGAGGTCAGGGGTTATCAGTCAGCCTTCACCCCTGCTAAGAGGCTCAAAGGCTGCTATACCGACTCGGAAAGGAAGCAGTATGAGTTTGGAGGAGGGCGTATTCTGTCTGGTTCACCGTGGTCGCTCAAAGCCGCTGAGGATTCTGGGAGGAAGTTGTTTGCGGTGTCTGGCCTGCTGTCAGACAGTGAGGCCTTGTCTAGTCCTGAGGACCGTAAGGATGGCTGTAAGGGGAACATCCTGTATGACTCCCAGGCCCCAGTGTGTCCTGTGTGCCATGCTGTGTTACGACCAGGTGAGCTACAGGAGCACATGGAGCAGGAGATGGGCAGACTGACACAGTTACAAATCAGTATTAATTCAGTGCAGAGGGACAATCCATTAGGGACTTCAAAGtctctctcactatctctgcACATTAAACGTGAGGGGGGATCTCCCGCCTCTCCCCCCTGCCCACCTGAAGACCCCCACTCAGACAGATACCAGATGTTTCTTCGTGTGAGGACCAACAGACATACAAGACTGAATGTCAGGATCGGCAAGCTGAAGAGGAGGAAAGCTGACGAAGTTCAGgACATTTTGGTGGacctgggaggagagggggagcagtGGAGGGAGCGGAGGAGGTTACAGATGACCTCCATGCTGGGGGGGTTTAAAGGGTCGGTATTTGTGAGCAGCAGCACATCTAATGAGGGCCGTGGCGACAGTGATGCTGACCTGGACGTTGATGGAGACGACACCGTGGACTACGGAGGAGCACAATATACAGAGGCAGACATCATCCCCTGTTCACAACGGGAGCccggggaggtggaggagaggaaagcacCGAGGGGGGCTGTTTTAAATGTTGGAACTCTGGACCATTCAAAATGGACAAATGAGGGATGTCCATCCACCAGCAACGAAGAACGCAACAAACTGGACAACAGCATTACCTCCGTACACAGGACCTGTAAAAACTGTGACATAGAGATggtctCTGAGGATTCGGCACTCACGACGCTCGATGCACTAAAAACCCGGATACGAGACCTAGAGAAGCAGATGTCCAGAGGAGACAGATACAAATGTCTCATCTGTATGGACACATATTCTACGCCCCTCACCTCCATCCAGTGCTGGCACGTCCACTGTGAGGAGTGCTGGCTCCGCACACTGGGGGCTAAGAAGCTTTGTCCACAGTGTAACACCATAACTTCACCCGGGGACCTGAGACGGGTGTATCTGTAGCCCGGCGGGGCCCGGGGAAGCACAGGCCTTTCAGGGGGACATAAAGGTCAGCTGGCCTGTCAGAGATCACCCTTGTCTTTGCACcttaacccccccacccccacccacccaccttccGAACTAGGTAGGGGCGCACCTCATGAATAGATCGAACCCATGACTGGGTATTGCACAATGATCAGTCCTCATGTCCTTTTGACGTTTTAGGTTTGACATTTCACCTTTGGTTCGCCCAGCTGGATGGTGTTCGTCTGTACCCTGCTCACCTCCACCTTTAGTGAGCCAGGACAGTTCTAAGAGGAGGACTCTGTGCTCAATCCGTTAATCCCCGTAAGGTATATAAATGAAATAAAGGACAAGAACTGAAGTATTCTCAGCGCTCAGGCACTGAAAGAAAGCTTTCAGGTGGATGTAGATCACTCTGGACtattattatatactgtatactctttTTAGAAATAATAATTGTCTGTTTTTACCAGGATAAAGCACATGTAAATAGTTTTGTGTATGTTTTCAATTGTGTATGTGAAAAAGATTAACACTCCCGTTGTGTTAACGGTCATGTTCTTATGAAGTCATGTTTTTTGGTTAGTTCGGGTGGGAGGAAAGTGTGAACATAACAATTGTCATATTTTGAGAttcattattttgtgtttttgtcGTTTAGGTTGTGTTTCTTTGTACAGGAgtacaaagtgtaattaatcaATGTTACAAAAAAACAATGTGTCTTTAAAAAAGATGGTTATTGCATAAATAAATATCTACACTACAACGATATCATTGAAAAACATTTATTCCACCGATTTTTGATTTAGGCCCAGATTCAATCTGATCGAGGGTTATAGGCACTGCG
>XM_036977842.1
cgTCATTCGAAGCGCGGAAAGCCTCTGAGCAGCAGCAGCCGCAGCCCGGTGAGCTTCTCCTCGTCCTCACGTTGTGCCACTTCTTATCTTACAATTCTAACTGGTATGTCACTGTGAAAAAGAAATACTGTAGCCAAGCTTACATTTCACTGCAGATATACTTGGAAATAATCTTGACCTTTTGCAAGCGCGCGTTTCTCTTCTGCTCGGACGGAATAAAGTCTCGACCGTCGCTGACATTGTAACTAGAGAAAGTGTTCGTTGTGTGACTGAAACAACTCCAAGACAGCGTTTAACTAGCCCTATGAGAATGGACTCACAGTGAAGTTATTCTACATCATCTTCAAATCACACCAACACTCAGCCCCTCCCCCTGACCAGTCCCTCCCTCTATAGGACTAAGGGAGGCGTGGATTGGATGGACCTCCACCGTCCCTCTTTTAAGATGGACAGCTCCTCCTACCTGCCCAGTCCCCTGGCCTCCCCAGCCCTGATGGTGCTGGCCTCCACAGCCGAGGCTGGCCACGATTCCTCCATCCCCTGCCAGGCCCCACGGCCTTTCGGTGTCCCCATCTCCGAGAAGGACCTccacctccccttcccctccggCTCCTACACATTTGCCTCCATGTACCACCGCCAGGGGCCCGTCTCCAGCCATGGCACCTTCCCCGCCAGAGActtccctgcctccctgctccacctccacccccagtTCCACCCCCCCAACCTGGACTGCTCATCTCTAGAGATGCTCAACCACAGCGGGGTAGGCGCCTTCAGACCCTTCTCCTCCCTGCCTGAGGAGAGGGAGGTCAGGGGTTATCAGTCAGCCTTCACCCCTGCTAAGAGGCTCAAAGGCTGCTATACCGACTCGGAAAGGAAGCAGTATGAGTTTGGAGGAGGGCGTATTCTGTCTGGTTCACCGTGGTCGCTCAAAGCCGCTGAGGATTCTGGGAGGAAGTTGTTTGCGGTGTCTGGCCTGCTGTCAGACAGTGAGGCCTTGTCTAGTCCTGAGGACCGTAAGGATGGCTTAGGTAAGGGGAACATCCTGTATGACTCCCAGGCCCCAGTGTGTCCTGTGTGCCATGCTGTGTTACGACCAGGTGAGCTACAGGAGCACATGGAGCAGGAGATGGGCAGACTGACACAGTTACAAATCAGTATTAATTCAGTGCAGAGGGACAATCCATTAGGGACTTCAAAGtctctctcactatctctgcACATTAAACGTGAGGGGGGATCTCCCGCCTCTCCCCCCTGCCCACCTGAAGACCCCCACTCAGACAGATACCAGATGTTTCTTCGTGTGAGGACCAACAGACATACAAGACTGAATGTCAGGATCGGCAAGCTGAAGAGGAGGAAAGCTGACGAAGTTCAGgACATTTTGGTGGacctgggaggagagggggagcagtGGAGGGAGCGGAGGAGGTTACAGATGACCTCCATGCTGGGGGGGTTTAAAGGGTCGGTATTTGTGAGCAGCAGCACATCTAATGAGGGCCGTGGCGACAGTGATGCTGACCTGGACGTTGATGGAGACGACACCGTGGACTACGGAGGAGCACAATATACAGAGGCAGACATCATCCCCTGTTCACAACGGGAGCccggggaggtggaggagaggaaagcacCGAGGGGGGCTGTTTTAAATGTTGGAACTCTGGACCATTCAAAATGGACAAATGAGGGATGTCCATCCACCAGCAACGAAGAACGCAACAAACTGGACAACAGCATTACCTCCGTACACAGGACCTGTAAAAACTGTGACATAGAGATggtctCTGAGGATTCGGCACTCACGACGCTCGATGCACTAAAAACCCGGATACGAGACCTAGAGAAGCAGATGTCCAGAGGAGACAGATACAAATGTCTCATCTGTATGGACACATATTCTACGCCCCTCACCTCCATCCAGTGCTGGCACGTCCACTGTGAGGAGTGCTGGCTCCGCACACTGGGGGCTAAGAAGCTTTGTCCACAGTGTAACACCATAACTTCACCCGGGGACCTGAGACGGGTGTATCTGTAGCCCGGCGGGGCCCGGGGAAGCACAGGCCTTTCAGGGGGACATAAAGGTCAGCTGGCCTGTCAGAGATCACCCTTGTCTTTGCACcttaacccccccacccccacccacccaccttccGAACTAGGTAGGGGCGCACCTCATGAATAGATCGAACCCATGACTGGGTATTGCACAATGATCAGTCCTCATGTCCTTTTGACGTTTTAGGTTTGACATTTCACCTTTGGTTCGCCCAGCTGGATGGTGTTCGTCTGTACCCTGCTCACCTCCACCTTTAGTGAGCCAGGACAGTTCTAAGAGGAGGACTCTGTGCTCAATCCGTTAATCCCCGTAAGGTATATAAATGAAATAAAGGACAAGAACTGAAGTATTCTCAGCGCTCAGGCACTGAAAGAAAGCTTTCAGGTGGATGTAGATCACTCTGGACtattattatatactgtatactctttTTAGAAATAATAATTGTCTGTTTTTACCAGGATAAAGCACATGTAAATAGTTTTGTGTATGTTTTCAATTGTGTATGTGAAAAAGATTAACACTCCCGTTGTGTTAACGGTCATGTTCTTATGAAGTCATGTTTTTTGGTTAGTTCGGGTGGGAGGAAAGTGTGAACATAACAATTGTCATATTTTGAGAttcattattttgtgtttttgtcGTTTAGGTTGTGTTTCTTTGTACAGGAgtacaaagtgtaattaatcaATGTTACAAAAAAACAATGTGTCTTTAAAAAAGATGGTTATTGCATAAATAAATATCTACACTACAACGATATCATTGAAAAACATTTATTCCACCGATTTTTGATTTAGGCCCAGATTCAATCTGATCGAGGGTTATAGGCACTGCG

Function

NR:

description
E3 ubiquitin-protein ligase RNF220-like

GO: NA

KEGG:

id description
K25174 RNF220; E3 ubiquitin-protein ligase RNF220

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021601401.2 False 2906 mRNA 0.50 15 54200190 54249220
XM_036977842.1 True 2909 mRNA 0.50 15 54200190 54249220
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110524046 LOC106613532 coding downstream 6576 54168957 ~ 54193614 (-)
LOC110524044 NA coding downstream 152170 54034503 ~ 54048020 (-)
LOC110524038 LOC106613526 coding downstream 225072 53961942 ~ 53989222 (-)
prrg1 LOC106613522 coding downstream 254588 53940943 ~ 53945602 (-)
ccdc181 ccdc181 coding downstream 271454 53922807 ~ 53928736 (-)
LOC110522871 LOC106613983 coding upstream 48573 54297793 ~ 54301057 (-)
LOC110522971 NA coding upstream 52760 54301980 ~ 54305832 (-)
LOC110524047 LOC106613533 coding upstream 61368 54310588 ~ 54319469 (-)
LOC110524048 NA coding upstream 77013 54326233 ~ 54327989 (-)
LOC110524050 LOC106613535 coding upstream 128903 54378123 ~ 54543804 (-)
G415652 NA non-coding downstream 82913 54113974 ~ 54117277 (-)
G415649 LOC106613530 non-coding downstream 83796 54113046 ~ 54116394 (-)
G415551 NA non-coding downstream 117661 54082317 ~ 54082529 (-)
G415546 NA non-coding downstream 120736 54079183 ~ 54079454 (-)
G415540 NA non-coding downstream 124988 54074922 ~ 54075202 (-)
G415772 NA non-coding upstream 17207 54266427 ~ 54266667 (-)
G416095 NA non-coding upstream 81131 54330351 ~ 54330701 (-)
G416100 NA non-coding upstream 88880 54338100 ~ 54338309 (-)
G416106 NA non-coding upstream 102068 54351288 ~ 54351689 (-)
G415464 nexn other downstream 194517 54002448 ~ 54005673 (-)
G415420 NA other downstream 307284 53890760 ~ 53892906 (-)
G415256 LOC106613513 other downstream 581326 53617683 ~ 53618864 (-)
G412613 NA other downstream 2587628 51558378 ~ 51612562 (-)
G412372 NA other downstream 2823060 51373465 ~ 51377130 (-)
G416110 NA other upstream 114066 54363286 ~ 54392411 (-)
LOC110524071 LOC106613554 other upstream 892095 55123617 ~ 55181458 (-)
G417527 NA other upstream 1359615 55608835 ~ 55609730 (-)
LOC110522975 LOC106613586 other upstream 2459578 56703896 ~ 56711499 (-)
G418830 NA other upstream 2584806 56834026 ~ 56834595 (-)

Expression

LOC110522970(LOC106613460) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 0.4.
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LOC110522970(LOC106613460) Expression in each Bioproject

Bar chart with 16 bars.
LOC110522970(LOC106613460) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 20.
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Co-expression Network