LOC110522871 (LOC106613983)


Basic Information

Item Value
gene id LOC110522871
gene name LOC106613983
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54297793 ~ 54301057 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977845.1
TTGGCCTTGCCTGCCATTCCAGTGAAATTACAAATTAGTTCATTAATATGTTAATTAGAccatgttatttttttgtttacgACTGGCCACTGGAACAGCATTAGATTTCTCATAATATTTCTAATTGCATGTCAATGATGCTATTGAGCTCATTTGGGCAGGAATTTGTATGCAAATGTCACGTAAAAGGGGTTGGCTGGTGAAGTATGCACGTTTCTTTGAATGAGAATTACCGATatttaaaatatgtatatatatttgggGAAGATTTTAATGATTTACTTAGGGAAGATTTTAATGATATCACACAGGAATAACTGCATAGCTGGTCATATTAGAAAACTCAGTGCAAAAGCTGAGACCGATAACGTTTATAAGGTTGCGCATTGAAATGGAGGCAACGCCACTATTCCGTGCGCTCTTTTATGACGTTTCATTCCAGAATCTGTAGGTAGATAAACTCCAACAAATAAATTCGAAAGGCTATTACTTGGATGACATTTCAAACAAGATCTTTCATCGCAGACTTCCATTCAGCGCAAACTAAGATTTATCCAAACTTCTCAACAAAGGAATTCAAAAATGGGCAACGTTTGGGAGTCCAACCTGTGTGTCCACCCCACAAATCCCTCAGCAATCAGGATGATCCTGAGAAGGGTTGGTTTTCCAGGCTCATCTCAGAAGGCTGTGTGGAGTCCTGTGCTGACCCAGCTGTCCCAGGGTGCTGTGCAGCATGTGGAGGCCGGTGCCAAAGCCAGTCAGGTATCCTCGTACCTTTCTTGGAAGAGGCTGAAGGATTTTATTGCGAAACAGAAGGTGAGCCAGCCCAAGAGGCCTAAACTGGTCCCCAGCATCAGGGCCCCCAAGGACCCCAGCCCACTACGACAGAAGCAGCAGCGACAGAGGAAGAGGTCAGCCGATAAGGTGTATGGCAGCAGCGGGTGCCCGAGAGCAGCCAAGAAGGACATCTCTGGAGATCTGGCCCAGCTCAAGCCTGGTCAGTCCACAGGAGACGCCTGGAACAATACAGACACTGGAGCTGAAGAACCTTGTCGTCTGGAGGTTATGAAGAACCTGACAGGTCTGTGGGACAGCACTGGGCAAGGCCAGCCTCAGCCGACTCCACCAGCCAACCGTCTCAGCCCCTCCCTGACCCAGTACTTAGCCTCCACTGTCACACCGAGGACCTTTGACCTCCAGATAATGGGCATGACCTCTGACCTAATGGACTTCTTGGACATGCCTGAGGAGAGACTGTCTATAGAGCTTTGGGACCTCGCGGAGGGCACAGGGGACCAGCGCTACAAAGCCAACTGGCAATTCTCCGAGGAGCACGGCAATGTGCTGATGGAGGGAGTCTGGCTCCAGAAAGACGACAACTGGTAATTTGGAGACCTCAGCTCGCCCAAACGCTTCCTCAGTAGGAAAGACGAGGGAGCTTATCTGCTGATATTCACTCATTCATATGCACACATCAGTAAAGGCTTTGAGGAAAATAGAAATTGCAATTGGAAGTtcagtttactttctgaattttAAAGGAATTGACATCAACCCCGGAACAAATGTGTGTcctcacaggcacacacaaaaaaaggatGACTCTTGAGGATTGCAGTATCTTATCATTTTTATATACAATTAATATTTTCATTAGCATAAATACAGTCATTCTTGTGTTTTTATTCACCTTTAAAATCCCGCCATGACAACCAGAGAAGTGTAGCATTGTAGGGTTGCTGTGTCTGTGCATTTGACTAGTCTAAAACGTCATGAACTGATGGTGTCACAGGTGGGATCTGAACACTGGTCTACTGCGTGAGAAACCACCATCTTAACAATCAGGCCAATAGATAATTTCTCCATTACACTGGCATAAGGGCCACTTATAGGAATTAATCTCTACCAGGTATAGTAGGACAACATATTTAATAACtgattattactattactattacttcCCCGAAAGGAATATAGATGTGTTGATCCCCAGGATGGGATATATGAGGATGATATGTCCACCCAAGCATCCAGACGCATGAAATAAATTAGCTTCCAGAATGCACTTGATTGCTGAAATAAATGGATTTCCGTTAATGATTCTATATTTTATTCGCTTTTATACAGCGCATGGTTATCTTTGAGCTTGTGAAAAAGAGTTTGTTTCAGTGTCAATTGGCGCTTTTTTTACTCATTCATCTCGAGTGTGTTATTTAAGTGACTGATTTACGTTGGGGTTTTGATTAATTCAGATGGTATTTACAGGGctttcagaaagtgttcacaccccttgactttttccacattttgttgtgttacaacctgaatttaaaatggattcaattgagatttttaaaaaaattaaaaagctgacactgaa
>XM_021601324.2
GTTGGCCTTGCCTGCCATTCCAGTGAAATTACAAATTAGTTCATTAATATGTTAATTAGAccatgttatttttttgtttacgACTGGCCACTGGAACAGCATTAGATTTCTCATAATATTTCTAATTGCATGTCAATGATGCTATTGAGCTCATTTGGGCAGGAATTTGTATGCAAATGTCACGTAAAAGGGGTTGGCTGGTGAAGTATGCACGTTTCTTTGAATGAGAATTACCGATatttaaaatatgtatatatatttgggGAAGATTTTAATGATTTACTTAGGGAAGATTTTAATGATATCACACAGGAATAACTGCATAGCTGGTCATATTAGAAAACTCAGTGCAAAAGCTGAGACCGATAACGTTTATAAGGTTGCGCATTGAAATGGAGGCAACGCCACTATTCCGTGCGCTCTTTTATGACGTTTCATTCCAGAATCTGTAGGTAGATAAACTCCAACAAATAAATTCGAAAGGCTATTACTTGGATGACATTTCAAACAAGATCTTTCATCGCAGACTTCCATTCAGCGCAAACTAAGATTTATCCAAACTTCTCAACAAAGGAATTCAAAAATGGGCAACGTTTGGGAGTCCAACCTGTGTGTCCACCCCACAAATCCCTCAGCAATCAGGATGATCCTGAGAAGGGTTGGTTTTCCAGGCTCATCTCAGAAGGCTGTGTGGAGTCCTGTGCTCTGTCCCAGAGTGCTGTACACCATGTGGAGGCCAATGCCAGTCATGACCTTCCCTGCCCCCTGACAGTGGAGCTGTTGAAGGCAAGAAATCTTTACATTCCATGGTTGAAGGATAGTCCTACTGTCAATCAGGAAGTGAGCCAGCTCAAGAGACCTAAGTTGACCCAGCTGTCCCAGGGTGCTGTGCAGCATGTGGAGGCCGGTGCCAAAGCCAGTCAGGTATCCTCGTACCTTTCTTGGAAGAGGCTGAAGGATTTTATTGCGAAACAGAAGGTGAGCCAGCCCAAGAGGCCTAAACTGGTCCCCAGCATCAGGGCCCCCAAGGACCCCAGCCCACTACGACAGAAGCAGCAGCGACAGAGGAAGAGGTCAGCCGATAAGGTGTATGGCAGCAGCGGGTGCCCGAGAGCAGCCAAGAAGGACATCTCTGGAGATCTGGCCCAGCTCAAGCCTGGTCAGTCCACAGGAGACGCCTGGAACAATACAGACACTGGAGCTGAAGAACCTTGTCGTCTGGAGGTTATGAAGAACCTGACAGGTCTGTGGGACAGCACTGGGCAAGGCCAGCCTCAGCCGACTCCACCAGCCAACCGTCTCAGCCCCTCCCTGACCCAGTACTTAGCCTCCACTGTCACACCGAGGACCTTTGACCTCCAGATAATGGGCATGACCTCTGACCTAATGGACTTCTTGGACATGCCTGAGGAGAGACTGTCTATAGAGCTTTGGGACCTCGCGGAGGGCACAGGGGACCAGCGCTACAAAGCCAACTGGCAATTCTCCGAGGAGCACGGCAATGTGCTGATGGAGGGAGTCTGGCTCCAGAAAGACGACAACTGGTAATTTGGAGACCTCAGCTCGCCCAAACGCTTCCTCAGTAGGAAAGACGAGGGAGCTTATCTGCTGATATTCACTCATTCATATGCACACATCAGTAAAGGCTTTGAGGAAAATAGAAATTGCAATTGGAAGTtcagtttactttctgaattttAAAGGAATTGACATCAACCCCGGAACAAATGTGTGTcctcacaggcacacacaaaaaaaggatGACTCTTGAGGATTGCAGTATCTTATCATTTTTATATACAATTAATATTTTCATTAGCATAAATACAGTCATTCTTGTGTTTTTATTCACCTTTAAAATCCCGCCATGACAACCAGAGAAGTGTAGCATTGTAGGGTTGCTGTGTCTGTGCATTTGACTAGTCTAAAACGTCATGAACTGATGGTGTCACAGGTGGGATCTGAACACTGGTCTACTGCGTGAGAAACCACCATCTTAACAATCAGGCCAATAGATAATTTCTCCATTACACTGGCATAAGGGCCACTTATAGGAATTAATCTCTACCAGGTATAGTAGGACAACATATTTAATAACtgattattactattactattacttcCCCGAAAGGAATATAGATGTGTTGATCCCCAGGATGGGATATATGAGGATGATATGTCCACCCAAGCATCCAGACGCATGAAATAAATTAGCTTCCAGAATGCACTTGATTGCTGAAATAAATGGATTTCCGTTAATGATTCTATATTTTATTCGCTTTTATACAGCGCATGGTTATCTTTGAGCTTGTGAAAAAGAGTTTGTTTCAGTGTCAATTGGCGCTTTTTTTACTCATTCATCTCGAGTGTGTTATTTAAGTGACTGATTTACGTTGGGGTTTTGATTAATTCAGATGGTATTTACAGGGctttcagaaagtgttcacaccccttgactttttccacattttgttgtgttacaacctgaatttaaaatggattcaattgagatttttaaaaaaattaaaaagctgacactgaa
>XM_036977843.1
CACCAGAAGATCCGGCATGGGGTGGAACGAGATTGAGAAGACAGCGCAGAACAGAGTGTGACGGAGAGGAGTTGAAAAGCTGCTTTTAAATGTCtttccagcaacaacaacaaaaaatacgtattttcaacGTGTTGTGCTCATAGACCCGTCGCTTTACCAGGGAGCATACCAAAGTACTAATCGGTCTAAATGTAAATCATGCTCTGCAGCAGTGATACTTCCATTCAGCGCAAACTAAGATTTATCCAAACTTCTCAACAAAGGAATTCAAAAATGGGCAACGTTTGGGAGTCCAACCTGTGTGTCCACCCCACAAATCCCTCAGCAATCAGGATGATCCTGAGAAGGGTTGGTTTTCCAGGCTCATCTCAGAAGGCTGTGTGGAGTCCTGTGCTGACCCAGCTGTCCCAGGGTGCTGTGCAGCATGTGGAGGCCGGTGCCAAAGCCAGTCAGGTATCCTCGTACCTTTCTTGGAAGAGGCTGAAGGATTTTATTGCGAAACAGAAGGTGAGCCAGCCCAAGAGGCCTAAACTGGTCCCCAGCATCAGGGCCCCCAAGGACCCCAGCCCACTACGACAGAAGCAGCAGCGACAGAGGAAGAGGTCAGCCGATAAGGTGTATGGCAGCAGCGGGTGCCCGAGAGCAGCCAAGAAGGACATCTCTGGAGATCTGGCCCAGCTCAAGCCTGGTCAGTCCACAGGAGACGCCTGGAACAATACAGACACTGGAGCTGAAGAACCTTGTCGTCTGGAGGTTATGAAGAACCTGACAGGTCTGTGGGACAGCACTGGGCAAGGCCAGCCTCAGCCGACTCCACCAGCCAACCGTCTCAGCCCCTCCCTGACCCAGTACTTAGCCTCCACTGTCACACCGAGGACCTTTGACCTCCAGATAATGGGCATGACCTCTGACCTAATGGACTTCTTGGACATGCCTGAGGAGAGACTGTCTATAGAGCTTTGGGACCTCGCGGAGGGCACAGGGGACCAGCGCTACAAAGCCAACTGGCAATTCTCCGAGGAGCACGGCAATGTGCTGATGGAGGGAGTCTGGCTCCAGAAAGACGACAACTGGTAATTTGGAGACCTCAGCTCGCCCAAACGCTTCCTCAGTAGGAAAGACGAGGGAGCTTATCTGCTGATATTCACTCATTCATATGCACACATCAGTAAAGGCTTTGAGGAAAATAGAAATTGCAATTGGAAGTtcagtttactttctgaattttAAAGGAATTGACATCAACCCCGGAACAAATGTGTGTcctcacaggcacacacaaaaaaaggatGACTCTTGAGGATTGCAGTATCTTATCATTTTTATATACAATTAATATTTTCATTAGCATAAATACAGTCATTCTTGTGTTTTTATTCACCTTTAAAATCCCGCCATGACAACCAGAGAAGTGTAGCATTGTAGGGTTGCTGTGTCTGTGCATTTGACTAGTCTAAAACGTCATGAACTGATGGTGTCACAGGTGGGATCTGAACACTGGTCTACTGCGTGAGAAACCACCATCTTAACAATCAGGCCAATAGATAATTTCTCCATTACACTGGCATAAGGGCCACTTATAGGAATTAATCTCTACCAGGTATAGTAGGACAACATATTTAATAACtgattattactattactattacttcCCCGAAAGGAATATAGATGTGTTGATCCCCAGGATGGGATATATGAGGATGATATGTCCACCCAAGCATCCAGACGCATGAAATAAATTAGCTTCCAGAATGCACTTGATTGCTGAAATAAATGGATTTCCGTTAATGATTCTATATTTTATTCGCTTTTATACAGCGCATGGTTATCTTTGAGCTTGTGAAAAAGAGTTTGTTTCAGTGTCAATTGGCGCTTTTTTTACTCATTCATCTCGAGTGTGTTATTTAAGTGACTGATTTACGTTGGGGTTTTGATTAATTCAGATGGTATTTACAGGGctttcagaaagtgttcacaccccttgactttttccacattttgttgtgttacaacctgaatttaaaatggattcaattgagatttttaaaaaaattaaaaagctgacactgaa

Function

NR:

description
uncharacterized protein LOC110522871

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977845.1 False 2380 mRNA 0.43 4 54297793 54300770
XM_021601324.2 False 2542 mRNA 0.44 3 54297793 54300771
XM_036977843.1 True 2074 mRNA 0.45 5 54297793 54301057

Neighbor

gene id symbol gene type direction distance location
LOC110522970 LOC106613460 coding downstream 48573 54200190 ~ 54249220 (-)
LOC110524046 LOC106613532 coding downstream 104179 54168957 ~ 54193614 (-)
LOC110524044 NA coding downstream 249773 54034503 ~ 54048020 (-)
LOC110524038 LOC106613526 coding downstream 322675 53961942 ~ 53989222 (-)
prrg1 LOC106613522 coding downstream 352191 53940943 ~ 53945602 (-)
LOC110522971 NA coding upstream 923 54301980 ~ 54305832 (-)
LOC110524047 LOC106613533 coding upstream 9531 54310588 ~ 54319469 (-)
LOC110524048 NA coding upstream 25176 54326233 ~ 54327989 (-)
LOC110524050 LOC106613535 coding upstream 77066 54378123 ~ 54543804 (-)
ssbp3b ssbp3 coding upstream 253994 54555051 ~ 54587190 (-)
G415772 NA non-coding downstream 31126 54266427 ~ 54266667 (-)
G415652 NA non-coding downstream 180516 54113974 ~ 54117277 (-)
G415649 LOC106613530 non-coding downstream 181399 54113046 ~ 54116394 (-)
G415551 NA non-coding downstream 215264 54082317 ~ 54082529 (-)
G415546 NA non-coding downstream 218339 54079183 ~ 54079454 (-)
G416095 NA non-coding upstream 29294 54330351 ~ 54330701 (-)
G416100 NA non-coding upstream 37043 54338100 ~ 54338309 (-)
G416106 NA non-coding upstream 50231 54351288 ~ 54351689 (-)
G416107 NA non-coding upstream 50873 54351930 ~ 54352374 (-)
G415464 nexn other downstream 292120 54002448 ~ 54005673 (-)
G415420 NA other downstream 404887 53890760 ~ 53892906 (-)
G415256 LOC106613513 other downstream 678929 53617683 ~ 53618864 (-)
G412613 NA other downstream 2685231 51558378 ~ 51612562 (-)
G412372 NA other downstream 2920663 51373465 ~ 51377130 (-)
G416110 NA other upstream 62229 54363286 ~ 54392411 (-)
LOC110524071 LOC106613554 other upstream 840258 55123617 ~ 55181458 (-)
G417527 NA other upstream 1307778 55608835 ~ 55609730 (-)
LOC110522975 LOC106613586 other upstream 2407741 56703896 ~ 56711499 (-)
G418830 NA other upstream 2532969 56834026 ~ 56834595 (-)

Expression


Co-expression Network