dio1 (dio1)


Basic Information

Item Value
gene id dio1
gene name dio1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54547513 ~ 54550162 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603351.2
ACTCTGTCAAATCGCATACATGTCAGGGGTAAAAGTAACGTTTAGACAAAAGCCCACAAAGACGGTCGAGGAAGGAGTGTTTGTTTGCACAACGTTCCACTCTGCCATAAAATAGGCTAGAAATCACGCATAGGCTATTGTTTCGCTGAGCACCAAAGAAAAAGATGATATTAATATGGAAATGGTTCATTTATCTGTCAATGCCATGTTTATTTTGCTTTGCGTTCATGCAATTTGTCTTTCTCACGCTTCTGAATTTGATTTCACGAAGCTTGACCAAGAAACTTATCTTAAAAATGGGCGAAAAGGTAACTATGACCCAGAATCCGAAGTTCAAGTATGAAGATTGGGGACCGACTTTTATGTCATGGAATTTTGTCAAGACCATCCTAGGGCACATGTGGACTAATGTCGGTCAAGAAGCTTTTGTGGGCAACAATGCTCCCGACTCACCAGTGATTACATTGGACGGCAAGATTACCAGTATCTACAACTATTTGAAAGACAACAGACCACTGGTGTTGAGTTTTGGAAGTTGTACTTGACCCCCGTTCATGTATAAACTTTGCGAGTTCAAGCAACTCGTCAAGGACTTCGGCGATGTGGCAGACTTCCTGGTGGTCTACGTTGCCGAGGCGCATTCAACAGACGGTTGGGTCTTTGCCAACAACTTTGACATTACTAAACACCGAAACCAGGAGGAGCGGCTGGCTGCAGCACAGTTCCTGGTCAAAGAGGACCCCCTGTGCCCCATCGTAGTGGATGAAATGAAAGACACCACAGCTAGTAAATATGGTGCTATTCCAGAGCGGCTGTATGTGCTGCAGGCAGGAAAGGTTGTTTATAAGGGAAAGATTGGGCCAAGAGGCTACAGCCCTGAGGAGGTGCGCTCCTTCCTGGAGAAAATGAAGTAGGAAGAGGTGAAtcacatctgtcattttaactATTTTTCTGTTATTTTTTTGTTATCTTGTCTCATATTATTATGTGTAATTCTGCTCTCTGGCATCCCAATTATCCACCTTTATAGTTTGGAGACTGTTTTTTAGTGACAGACACAGATCAAGCCTATGGCCTCTGTAACCCGATGAGGAGACACCTGGAGAGAGACCATTCAATCAGAATGGATGGGTTGATAAAACAAGGAACTTATCATAGGAAGTAAAGGTGGTTGTTAATTCTGACCTTGAGTAAAAAATGACCTTTATCCAAATATGCAGTTCAGGTCAGAGTTGTTATATTGTATTGACATAACTGCACTATCATAACTTTTCTAAGGGCCGAGTGTGAAACAAGCCCTTTGCCTGCTAGATTATCAATATGCATTTCGTACGGGATCTTGTActtcacaaaacattaagaatttCTCAAATGTAGGTAGGTCTAGTTGATGTGTAATAGCCGTATAGTAATTGCACTGGCATATCTGTAACCATTCTCTTGATACATTGTCTATGAATGTTCATAAGTTACTTTGGGATACAACTGCTTTTTCCATGATGATTACAGTGCAAACCTCTGGTCATTGTAATTTGATGAACTGAAAGCAGTTTTGTTGCTAAATAATTTAGGAGCATTTAGAGCATGTTGTTGTGGTGATTGAGGATATACCTGCTTATTAAAAACTCTTCATGAACTGA

Function

symbol description
dio1 Predicted to enable thyroxine 5'-deiodinase activity. Acts upstream of or within regulation of neural retina development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including eye; female organism; heart; liver; and male organism. Orthologous to human DIO1 (iodothyronine deiodinase 1).

NR:

description
type I iodothyronine deiodinase

GO:

id name namespace
GO:0042446 hormone biosynthetic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0005789 endoplasmic reticulum membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0004800 thyroxine 5'-deiodinase activity molecular_function

KEGG:

id description
K01562 DIO1; type I thyroxine 5'-deiodinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603351.2 True 1640 mRNA 0.41 4 54547513 54550162

Neighbor

gene id symbol gene type direction distance location
LOC110524051 LOC106613536 coding upstream 168775 54374204 ~ 54378738 (+)
mutyh mutyh coding upstream 183798 54346481 ~ 54395448 (+)
obscna LOC106613530 coding upstream 378555 54083355 ~ 54168958 (+)
zgc:153738 LOC106613531 coding upstream 490138 54049039 ~ 54057375 (+)
LOC110524043 NA coding upstream 523009 54019945 ~ 54024504 (+)
LOC110522872 LOC106613984 coding downstream 2193 54552355 ~ 54554389 (+)
LOC118964620 NA coding downstream 39796 54589958 ~ 54595332 (+)
LOC110524055 NA coding downstream 45335 54595497 ~ 54613143 (+)
fpgt fpgt coding downstream 67362 54617524 ~ 54620337 (+)
LOC118964715 NA coding downstream 73528 54623690 ~ 54636937 (+)
G415887 NA non-coding upstream 33964 54503035 ~ 54513549 (+)
G415886 NA non-coding upstream 51124 54458230 ~ 54496389 (+)
G415819 NA non-coding upstream 202412 54344875 ~ 54345101 (+)
G415812 LOC106562530 non-coding upstream 213460 54333817 ~ 54334053 (+)
G415914 NA non-coding downstream 4914 54555076 ~ 54556336 (+)
G415946 NA non-coding downstream 39912 54590074 ~ 54613142 (+)
G416005 NA non-coding downstream 138420 54688582 ~ 54688882 (+)
G416362 NA non-coding downstream 285451 54835613 ~ 54837792 (+)
G416367 NA non-coding downstream 289200 54839362 ~ 54839580 (+)
G415809 NA other upstream 217033 54330080 ~ 54330480 (+)
G415808 NA other upstream 217733 54329195 ~ 54329780 (+)
G415582 LOC106584099 other upstream 364083 54177929 ~ 54183430 (+)
G414488 LOC106562530 other upstream 1435006 53112183 ~ 53112507 (+)
G416857 NA other downstream 774483 55324645 ~ 55325271 (+)
G418077 LOC106613582 other downstream 2067728 56617890 ~ 56628617 (+)
G418119 LOC106613588 other downstream 2176023 56726185 ~ 56729821 (+)
G418251 rtca other downstream 2373762 56923924 ~ 56925176 (+)

Expression


Co-expression Network