LOC110522872 (LOC106613984)


Basic Information

Item Value
gene id LOC110522872
gene name LOC106613984
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54552355 ~ 54554389 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979051.1
ATGGCAGCCAAGCACGCCAGAGGCAGCGAGGTTCCAGCCACTGCCTCagtgagagagagccaggagaAGAGCAGCAAAGCAGTAGAGGTGTCAGGGGGAGCTCCTTCATTGCTCCGTAGGCAGTCGTGTAGGCCGTCGTCTAGGCCAGCTCCCAGCCAGGCTCATGCCCACACTAAACCCCAGGCCCTCTTCAGCCTGAAAGGGCTCGTCGCCACCCAGAAGTTCTCCAAGGCACTCAAGGAACGCATTGCACTGAAGATTGCAATGAGGAACATCCCGGCAAGGAAACCTATTGTTATAGTCAATGAGCAGGTGCCAGCGGGTTCGGCCCAGCCTGCCGAGATGTTCCCCTGCGGCCTGATCCATCGGATGCTGCAGGACTTCCTGTCATCTCGGCTGGAGGCCATGGATTATAGCGCCCCCTCCTGTGGTGGTCTGGTCAAGGCGCTGAGTGAGGAGGTGAAGGCTCTGGTGAGGACTGTGTGTCCTGACCGCTACCGGCTGGTGTGTACTGTGGCGCTAGGCCAGCTGGGTCCAGAGGGGCAGCAAGGATATGGAGGGCTCGTACTGGCTAGTCGTAGTCTCTGGGATCCCCATATAGACACCTGTGTTGCCCACACCTACCAGAGCCAAGAGATGTTCTGTACTGCAAATGTGTTTGCTGTGTACTTCGAGTAA

Function

NR:

description
tctex1 domain-containing protein 1-B-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979051.1 True 678 mRNA 0.58 4 54552355 54554389

Neighbor

gene id symbol gene type direction distance location
dio1 dio1 coding upstream 2193 54547513 ~ 54550162 (+)
LOC110524051 LOC106613536 coding upstream 173617 54374204 ~ 54378738 (+)
mutyh mutyh coding upstream 188640 54346481 ~ 54395448 (+)
obscna LOC106613530 coding upstream 383397 54083355 ~ 54168958 (+)
zgc:153738 LOC106613531 coding upstream 494980 54049039 ~ 54057375 (+)
LOC118964620 NA coding downstream 35569 54589958 ~ 54595332 (+)
LOC110524055 NA coding downstream 41108 54595497 ~ 54613143 (+)
fpgt fpgt coding downstream 63135 54617524 ~ 54620337 (+)
LOC118964715 NA coding downstream 69301 54623690 ~ 54636937 (+)
LOC110524059 LOC106613985 coding downstream 147723 54702112 ~ 54716209 (+)
G415887 NA non-coding upstream 38806 54503035 ~ 54513549 (+)
G415886 NA non-coding upstream 55966 54458230 ~ 54496389 (+)
G415819 NA non-coding upstream 207254 54344875 ~ 54345101 (+)
G415812 LOC106562530 non-coding upstream 218302 54333817 ~ 54334053 (+)
G415914 NA non-coding downstream 687 54555076 ~ 54556336 (+)
G415946 NA non-coding downstream 35685 54590074 ~ 54613142 (+)
G416005 NA non-coding downstream 134193 54688582 ~ 54688882 (+)
G416362 NA non-coding downstream 281224 54835613 ~ 54837792 (+)
G416367 NA non-coding downstream 284973 54839362 ~ 54839580 (+)
G415809 NA other upstream 221875 54330080 ~ 54330480 (+)
G415808 NA other upstream 222575 54329195 ~ 54329780 (+)
G415582 LOC106584099 other upstream 368925 54177929 ~ 54183430 (+)
G414488 LOC106562530 other upstream 1439848 53112183 ~ 53112507 (+)
G416857 NA other downstream 770256 55324645 ~ 55325271 (+)
G418077 LOC106613582 other downstream 2063501 56617890 ~ 56628617 (+)
G418119 LOC106613588 other downstream 2171796 56726185 ~ 56729821 (+)
G418251 rtca other downstream 2369535 56923924 ~ 56925176 (+)

Expression


Co-expression Network