LOC118964620


Basic Information

Item Value
gene id LOC118964620
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54589958 ~ 54595332 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977854.1
TAAAGTGGTATTGATCTTAAAGTTCCACTTTAAAAAGTTTAAACTAAATTGGTCACGCAACTCTACCAACAGGAGGCGTGTGATCTGTTTAGCTGCGACAGCACACTGTTGCGTCCGAGgaatgggcagagagggggtGGTGTCTGGTGTGCGAACTTTTCTCGGTGAGACTGCCTCTACGTACGTTTTGTTGTGCACATTCATTCAAGCAAATGTGACCGGATCGTCTGCATATCATTTCagtttggCTGAAAGACACGCAGGGTCTCCCTGTATTACCAACTCTGTTGATGACGTCCACTTTGACCACACTATAGGAGTCGGACAGGTTGTCAACATCAAAGCAAAAGTCAACGGAGCCTTCACATCCAGTATGAAGatGCAGGTGATTCCACGGACGCAGGCAGAGCAGATGGAGTACAGCATCGCggcagagaggaggtggaggatgagaCTGATCCCCGCTGAGATCATCACAGACCTACTGAGCAGCAGCACAGCTCAACTAGGAGTACAAGGACCCAGTGCCAGCCGAGCGGACGCAGGTAGAGAGCGTGGCGCTGGTGCTGCCGCCCCATGCCAACCACCAGGTCGGCACCGTCGGCCGGCCAGATCATGGCCTGGATGGAGAACGTGGCCACCATCGCAGCCCATTGAGTCCTATTATATCTGTGACCTGCCCGTCTTTCTGAACTCATGGAGATACTGAGGTTTCTTATTGTGTCAAAATGTGGATGTAGTTGTAGTAGATTGGCCACAACAGGGTTGAGCCTCTGTAGAAGACATGAGATGGATtaagtctccctccctcccttcctccctccttccctgttcctctttctcgctctctctctccctctttctccccactTTCGCACACACATCCTTTCTCCAGTCGTCTGTGTAGCGCCCACCCCACCCTGAGGACCATAGACATGTTCCCCTTTCAGGCTCCATCTCACATTGGTGACCGGCTGGTGCTGAAGGCCATTGTTAATAATGCCTTCAAGAACAAGTGAGAAGGAATTAGTCTgaaaagtacactgaacaaaaatgtaaacgaaacatgtaagaaaactgaacaaaaatataaatgcagcatgtaaagtgttggtcccctgtttcatgagctgaaataaaagatcccaaaaatgttTGATACACACAAAGCTTAATTCTCAGAAAATGTGggcacaaatgtatttatttacatccctgtgCTCACTAGAGcattctcctttgtcaagatacttcatccacctaacaggtgtggcatatcaagaagctgattaaagagcatgatcgttacataggtgcaccttgtgctggggacaataatagGCTTCTAAAATGCGCAGTTTTGTCACCTAACATAATGCCACAGTTGtctaaagttttgagggagcgtgcaattggcatgctgactgcaggaatgtccaccagcgctgttgacagagaattgaatgttcatatcCCTACCATgagccacctccaacatcattttagag

Function

NR:

description
uncharacterized protein LOC109902292 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977854.1 True 1508 mRNA 0.48 5 54589958 54595332

Neighbor

gene id symbol gene type direction distance location
LOC110522872 LOC106613984 coding upstream 35569 54552355 ~ 54554389 (+)
dio1 dio1 coding upstream 39796 54547513 ~ 54550162 (+)
LOC110524051 LOC106613536 coding upstream 211220 54374204 ~ 54378738 (+)
mutyh mutyh coding upstream 226243 54346481 ~ 54395448 (+)
obscna LOC106613530 coding upstream 421000 54083355 ~ 54168958 (+)
LOC110524055 NA coding downstream 165 54595497 ~ 54613143 (+)
fpgt fpgt coding downstream 22192 54617524 ~ 54620337 (+)
LOC118964715 NA coding downstream 28358 54623690 ~ 54636937 (+)
LOC110524059 LOC106613985 coding downstream 106780 54702112 ~ 54716209 (+)
LOC110524062 LOC106613542 coding downstream 223281 54818613 ~ 54833842 (+)
G415914 NA non-coding upstream 33622 54555076 ~ 54556336 (+)
G415887 NA non-coding upstream 76409 54503035 ~ 54513549 (+)
G415886 NA non-coding upstream 93569 54458230 ~ 54496389 (+)
G415819 NA non-coding upstream 244857 54344875 ~ 54345101 (+)
G416005 NA non-coding downstream 93250 54688582 ~ 54688882 (+)
G416362 NA non-coding downstream 240281 54835613 ~ 54837792 (+)
G416367 NA non-coding downstream 244030 54839362 ~ 54839580 (+)
G416377 NA non-coding downstream 263698 54859030 ~ 54859350 (+)
G416378 NA non-coding downstream 264109 54859441 ~ 54859821 (+)
G415809 NA other upstream 259478 54330080 ~ 54330480 (+)
G415808 NA other upstream 260178 54329195 ~ 54329780 (+)
G415582 LOC106584099 other upstream 406528 54177929 ~ 54183430 (+)
G414488 LOC106562530 other upstream 1477451 53112183 ~ 53112507 (+)
G416857 NA other downstream 729313 55324645 ~ 55325271 (+)
G418077 LOC106613582 other downstream 2022558 56617890 ~ 56628617 (+)
G418119 LOC106613588 other downstream 2130853 56726185 ~ 56729821 (+)
G418251 rtca other downstream 2328592 56923924 ~ 56925176 (+)
LOC100135807 LOC106613594 other downstream 2348506 56943838 ~ 56958165 (+)

Expression


Co-expression Network