LOC118964715


Basic Information

Item Value
gene id LOC118964715
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54623690 ~ 54636937 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118964715
atgtatcggagcaacaacggctcaactgTAAagagGTACTCTGTGGCCCATTGTTCCCTGGACTTGGGATTTATCCTGTTCCTCTGTATCTCCCTTGGACTGCTTCTCTTTCACTGGTGGTCCTGCTCCATCAACTGGCTTGGGGACTATGTTGGTCCTGTGCCACATTGGCTGTGGCTGGCTGGAGGAGGCAGTACAGAGGCCCAACACCAAAGGGCACCACCCCTACGATGCCTTTGTGTTTTATAAAGTGGGAGAGACGAGCGCTGGGTGGTGGAACAGCTGCTGCCTGGCCTGGAGCAGAGCGGGCCTCCATTCCTGCGTCTCTAACTGCACAGCAGGGACTTCCAGCTGGGGAAGGACATTGTGAACAACATCACAGACAGCCACTACAGCAGCCACCACACGCTGTGTGTGATGAGTCATCACTACCTGCACAGTAACGGATGCTCCCTTGAGCTGTGACTGGCCACCCTGCGTCTGCTGGTGGAGACATCCCCCCCTAGCCAGCTGTCTACCCAAGACTGCCTGACTAGGCTGGTCAAGACTAGAACCTACATGGACTGGTCCCAGGACCCAGACCTGCAGCCTACCTTTAAGGACCGCCAGTGGACCAAACAGGCTCCTCCTGAACCAGGATCATCGACCAAGCTCATCATCGCCATTGACTCGGCCAAGGGCATGGAGTGCCTGCACAACCTCACCCTAGCCCATCATCCACAGGGACCACAACAAGTCAATGTGGAAGTATTTGCCATTTCTAGTCATATTCTACTCGATGAGGATGGACATGACGTGGTGGTCAACTTTGGAGAGACATTCACTCAGTGTACTCACTACACTGTCAACGCAGACATGTTCAGCTTTGCCCTGTGTCTGTGGGAGCTGCTCACTGGAGAGATTCCCTTTTCCCACCTGAAACCTGCTGCAGACATGGCCTACCACCACATCCGGCCTCCTATTGGCTACTCGATCCACAAACCCATCTCTGCCATGCTAATGAGGGGCTGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118964715 True 1011 mRNA 0.55 7 54623690 54636937

Neighbor

gene id symbol gene type direction distance location
fpgt fpgt coding upstream 3353 54617524 ~ 54620337 (+)
LOC110524055 NA coding upstream 10547 54595497 ~ 54613143 (+)
LOC118964620 NA coding upstream 28358 54589958 ~ 54595332 (+)
LOC110522872 LOC106613984 coding upstream 69301 54552355 ~ 54554389 (+)
dio1 dio1 coding upstream 73528 54547513 ~ 54550162 (+)
LOC110524059 LOC106613985 coding downstream 65175 54702112 ~ 54716209 (+)
LOC110524062 LOC106613542 coding downstream 181676 54818613 ~ 54833842 (+)
LOC110524063 LOC106613544 coding downstream 231434 54868248 ~ 54876340 (+)
LOC110522972 LOC106613545 coding downstream 239926 54876863 ~ 54888523 (+)
LOC110524066 LOC106613547 coding downstream 289396 54926333 ~ 54935194 (+)
G415946 NA non-coding upstream 10548 54590074 ~ 54613142 (+)
G415914 NA non-coding upstream 67354 54555076 ~ 54556336 (+)
G415887 NA non-coding upstream 110141 54503035 ~ 54513549 (+)
G415886 NA non-coding upstream 127301 54458230 ~ 54496389 (+)
mutyh mutyh non-coding upstream 228242 54346481 ~ 54395448 (+)
G416005 NA non-coding downstream 51645 54688582 ~ 54688882 (+)
G416362 NA non-coding downstream 198676 54835613 ~ 54837792 (+)
G416367 NA non-coding downstream 202425 54839362 ~ 54839580 (+)
G416377 NA non-coding downstream 222093 54859030 ~ 54859350 (+)
G416378 NA non-coding downstream 222504 54859441 ~ 54859821 (+)
G415809 NA other upstream 293210 54330080 ~ 54330480 (+)
G415808 NA other upstream 293910 54329195 ~ 54329780 (+)
G415582 LOC106584099 other upstream 440260 54177929 ~ 54183430 (+)
G416857 NA other downstream 687708 55324645 ~ 55325271 (+)
G418077 LOC106613582 other downstream 1980953 56617890 ~ 56628617 (+)
G418119 LOC106613588 other downstream 2089248 56726185 ~ 56729821 (+)
G418251 rtca other downstream 2286987 56923924 ~ 56925176 (+)
LOC100135807 LOC106613594 other downstream 2306901 56943838 ~ 56958165 (+)

Expression


Co-expression Network