LOC110524059 (LOC106613985)


Basic Information

Item Value
gene id LOC110524059
gene name LOC106613985
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54702112 ~ 54716209 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603360.2
GTCGAAGGAGACAAAAGGAATAATCTTACCACAAATTTAACTACTCTTGAAAGGGATATTGACATTTGAAACTGTCAGGAAGTTGCTGTTGGGTTGTTTAGCGCACTACCGataattacattttaaatgcaCTGGAAAAGTGAACAGAAATTAGAATGTTGCAATGTTGTTGACGAGAATGAAAACGTTTCCAACGATGGGGGCACACCCGTGGAAGTTTTGGGTGACGATTCCTGCTCCCTCGGCTCATCCTCCCCGTCGCTACAGGCGATGGTGTCTGCACCTCTGTTGGGTAGAACTGTTTGTGCAAGTTGCAGTGAGGACATTTTGGATAAATACTTGCTGAAGgTTAACGACTTGTGCTGGCATGTGCGTTGTCTCTCCTGTAGCGTGTGCCAAACATCGCTTGGCAGTCATACAAGTTGTTACATCAAAGAAAAAGAGGTCTTTTGCAAATTGGACTACTTTAGAAGATATGGAACATGGTGCGCGTGCTGCGGTCGAAATATCCACTCTACAGACTGGGTCCGCCGGGCGAAGGGCAACGTGTACCACCTGGCGTGTTTCGCCTGTTTCTCCTGTAAGAGGCAGCTGTCCACGGGGGAAGAGTTTGCCCTGGTGGAGGAGAAGGTGCTGTGTCGTGTCCACTACGACTGTATGCTGGACAACCTGAAACGCGCCGTGGAGAAAGGAAGTGGTGTGAACCTAGAGGGGGCGATGCCAACAGAACAGGAAGTGAATCAGCCTAAGCCGTCGAAAAGAGCGCGCACCAGCTTCACCGCTGACCAATTACAGGTAATGCAGGCCCAGTTTGCCCAGGACAACAACCCAGATGCCCAGACCCTGCAGAAGCTGGCAGAGCAGACAGGCCTGAGTAGGAGAGTCATACAGGTTTGGTTCCAGAACTGTAGAGCGCGCCATAAGAAGCATGTGAGCCCCAACCACTCCTCAGccactcccctgtcctccctGCAGCCCGGTCGCCACTCCCAGCCCACCCCGGCCCCAGAAGAGCTGCAGTACACAGCCTACGGCACCCCGGAGGGCTCCATGCTCACCGCGCTGCACTCCTACATCGATGTGCACTCCCCTCAGTCTATGCTGTTCCATCCCCTGCTGCCCCCCCACGCCATGACCTCCCTTCCTGTGACCCACGCCTgagccagacaaacacacacacacacgcacacacaatttGCCAGAGCCTCACACACCACCAGGGATCTTCAGCCTAGTAGGTTTATTCTTAACAAATTAATTAAGTGTAACATTTCATGTGACTTGTCAGTAAGGGTCATGTTAGAAGCCTTGTCTGTCTGAAAGGGGCCCCCATACACACTTAAGTTGTACAATTGATGTTCAATGCATTTGTCACAATGGTTGATAACAGCAGTTTATTTTTTCACTTCCAAAAATATACACACAAGTACAATGGTTGAGTAAACACGTTTGTGCGTACAAACTATTTTTTGTACAATACAAATATGAGTTGCATCACAACCATTGTGTCATACTTTATACATCAGTTGGATAACTGTAGTGTGTACAGAGCTTTGTGTATTTATTGCAAAGTGCCACAGTTTGATGCCGATCTTTTAtctaagggggtggggggggggactagATTGCCATTGACAAACCATTGTGAAGTTTATCTTAAACGATGAATTATTTGTACATCAGTATTTTAAATTATTGTTGTTTCATGTATTTATTGTATGTGATTAAGAAAATAAATGTCTATTGACAAAATGACTTTATAGAATAGTGACCAGTTTCGActcacaacaacaaccacaatgaAGCCGAGCTAAACAGGAAAAATGGACTCAACGTCATGAATGTAATGTACATTTTTTGAGATTGATACATGGCATGGAAGGCCCCTCCATATACTCAATAAGGCACCAATGGTTGATTAGCATCAATTTCTaaaaaaacaattttttaaaGAAGCAAACCCCAATCAAATATTCGTGTTATTAAATAATATGCTTATATACAGTCCAAACATTCATACATACTCACTGTTATTTAAAATAAAGCATAGATATGCAAAATtctttacataaaaaaaaa
>XM_021603362.2
GTCGAAGGAGACAAAAGGAATAATCTTACCACAAATTTAACTACTCTTGAAAGGGATATTGACATTTGAAACTGTCAGGAAGTTGCTGTTGGGTTGTTTAGCGCACTACCGataattacattttaaatgcaCTGGAAAAGTGAACAGAAATTAGAATGTTGCAATGTTGTTGACGAGAATGAAAACGTTTCCAACGATGGGGGCACACCCGTGGAAGTTTTGGGTGACGATTCCTGCTCCCTCGGCTCATCCTCCCCGTCGCTACAGGCGATGGTGTCTGCACCTCTGTTGGGTAGAACTGTTTGTGCAAGTTGCAGTGAGGACATTTTGGATAAATACTTGCTGAAGgTTAACGACTTGTGCTGGCATGTGCGTTGTCTCTCCTGTAGCGTGTGCCAAACATCGCTTGGCAGTCATACAAGTTGTTACATCAAAGAAAAAGAGGTCTTTTGCAAATTGGACTACTTTAGATATGGAACATGGTGCGCGTGCTGCGGTCGAAATATCCACTCTACAGACTGGGTCCGCCGGGCGAAGGGCAACGTGTACCACCTGGCGTGTTTCGCCTGTTTCTCCTGTAAGAGGCAGCTGTCCACGGGGGAAGAGTTTGCCCTGGTGGAGGAGAAGGTGCTGTGTCGTGTCCACTACGACTGTATGCTGGACAACCTGAAACGCGCCGTGGAGAAAGGAAGTGGTGTGAACCTAGAGGGGGCGATGCCAACAGAACAGGAAGTGAATCAGCCTAAGCCGTCGAAAAGAGCGCGCACCAGCTTCACCGCTGACCAATTACAGGTAATGCAGGCCCAGTTTGCCCAGGACAACAACCCAGATGCCCAGACCCTGCAGAAGCTGGCAGAGCAGACAGGCCTGAGTAGGAGAGTCATACAGGTTTGGTTCCAGAACTGTAGAGCGCGCCATAAGAAGCATGTGAGCCCCAACCACTCCTCAGccactcccctgtcctccctGCAGCCCGGTCGCCACTCCCAGCCCACCCCGGCCCCAGAAGAGCTGCAGTACACAGCCTACGGCACCCCGGAGGGCTCCATGCTCACCGCGCTGCACTCCTACATCGATGTGCACTCCCCTCAGTCTATGCTGTTCCATCCCCTGCTGCCCCCCCACGCCATGACCTCCCTTCCTGTGACCCACGCCTgagccagacaaacacacacacacacgcacacacaatttGCCAGAGCCTCACACACCACCAGGGATCTTCAGCCTAGTAGGTTTATTCTTAACAAATTAATTAAGTGTAACATTTCATGTGACTTGTCAGTAAGGGTCATGTTAGAAGCCTTGTCTGTCTGAAAGGGGCCCCCATACACACTTAAGTTGTACAATTGATGTTCAATGCATTTGTCACAATGGTTGATAACAGCAGTTTATTTTTTCACTTCCAAAAATATACACACAAGTACAATGGTTGAGTAAACACGTTTGTGCGTACAAACTATTTTTTGTACAATACAAATATGAGTTGCATCACAACCATTGTGTCATACTTTATACATCAGTTGGATAACTGTAGTGTGTACAGAGCTTTGTGTATTTATTGCAAAGTGCCACAGTTTGATGCCGATCTTTTAtctaagggggtggggggggggactagATTGCCATTGACAAACCATTGTGAAGTTTATCTTAAACGATGAATTATTTGTACATCAGTATTTTAAATTATTGTTGTTTCATGTATTTATTGTATGTGATTAAGAAAATAAATGTCTATTGACAAAATGACTTTATAGAATAGTGACCAGTTTCGActcacaacaacaaccacaatgaAGCCGAGCTAAACAGGAAAAATGGACTCAACGTCATGAATGTAATGTACATTTTTTGAGATTGATACATGGCATGGAAGGCCCCTCCATATACTCAATAAGGCACCAATGGTTGATTAGCATCAATTTCTaaaaaaacaattttttaaaGAAGCAAACCCCAATCAAATATTCGTGTTATTAAATAATATGCTTATATACAGTCCAAACATTCATACATACTCACTGTTATTTAAAATAAAGCATAGATATGCAAAATtctttacataaaaaaaaa
>XM_021603361.2
ccctttttaaatgtaattttgatAATCGCTGGGGTTGTCATGTTAAAAGGTGAAGAGGATGATAGTTATGGGATGTAGCTTGGGGAGGTTTTTTTAAAAGTCGCTGAGTGTGACAGACCAAAATCCCCTGTTCCTATAGCTTGTAGTCATGTGTGAAGATTGCAAAGGCGACGTAGAGGTTATCAGTAGgtggagagagggcaggagagaaatTCGAATGGGCACACCCGTGGAAGTTTTGGGTGACGATTCCTGCTCCCTCGGCTCATCCTCCCCGTCGCTACAGGCGATGGTGTCTGCACCTCTGTTGGGTAGAACTGTTTGTGCAAGTTGCAGTGAGGACATTTTGGATAAATACTTGCTGAAGgTTAACGACTTGTGCTGGCATGTGCGTTGTCTCTCCTGTAGCGTGTGCCAAACATCGCTTGGCAGTCATACAAGTTGTTACATCAAAGAAAAAGAGGTCTTTTGCAAATTGGACTACTTTAGAAGATATGGAACATGGTGCGCGTGCTGCGGTCGAAATATCCACTCTACAGACTGGGTCCGCCGGGCGAAGGGCAACGTGTACCACCTGGCGTGTTTCGCCTGTTTCTCCTGTAAGAGGCAGCTGTCCACGGGGGAAGAGTTTGCCCTGGTGGAGGAGAAGGTGCTGTGTCGTGTCCACTACGACTGTATGCTGGACAACCTGAAACGCGCCGTGGAGAAAGGAAGTGGTGTGAACCTAGAGGGGGCGATGCCAACAGAACAGGAAGTGAATCAGCCTAAGCCGTCGAAAAGAGCGCGCACCAGCTTCACCGCTGACCAATTACAGGTAATGCAGGCCCAGTTTGCCCAGGACAACAACCCAGATGCCCAGACCCTGCAGAAGCTGGCAGAGCAGACAGGCCTGAGTAGGAGAGTCATACAGGTTTGGTTCCAGAACTGTAGAGCGCGCCATAAGAAGCATGTGAGCCCCAACCACTCCTCAGccactcccctgtcctccctGCAGCCCGGTCGCCACTCCCAGCCCACCCCGGCCCCAGAAGAGCTGCAGTACACAGCCTACGGCACCCCGGAGGGCTCCATGCTCACCGCGCTGCACTCCTACATCGATGTGCACTCCCCTCAGTCTATGCTGTTCCATCCCCTGCTGCCCCCCCACGCCATGACCTCCCTTCCTGTGACCCACGCCTgagccagacaaacacacacacacacgcacacacaatttGCCAGAGCCTCACACACCACCAGGGATCTTCAGCCTAGTAGGTTTATTCTTAACAAATTAATTAAGTGTAACATTTCATGTGACTTGTCAGTAAGGGTCATGTTAGAAGCCTTGTCTGTCTGAAAGGGGCCCCCATACACACTTAAGTTGTACAATTGATGTTCAATGCATTTGTCACAATGGTTGATAACAGCAGTTTATTTTTTCACTTCCAAAAATATACACACAAGTACAATGGTTGAGTAAACACGTTTGTGCGTACAAACTATTTTTTGTACAATACAAATATGAGTTGCATCACAACCATTGTGTCATACTTTATACATCAGTTGGATAACTGTAGTGTGTACAGAGCTTTGTGTATTTATTGCAAAGTGCCACAGTTTGATGCCGATCTTTTAtctaagggggtggggggggggactagATTGCCATTGACAAACCATTGTGAAGTTTATCTTAAACGATGAATTATTTGTACATCAGTATTTTAAATTATTGTTGTTTCATGTATTTATTGTATGTGATTAAGAAAATAAATGTCTATTGACAAAATGACTTTATAGAATAGTGACCAGTTTCGActcacaacaacaaccacaatgaAGCCGAGCTAAACAGGAAAAATGGACTCAACGTCATGAATGTAATGTACATTTTTTGAGATTGATACATGGCATGGAAGGCCCCTCCATATACTCAATAAGGCACCAATGGTTGATTAGCATCAATTTCTaaaaaaacaattttttaaaGAAGCAAACCCCAATCAAATATTCGTGTTATTAAATAATATGCTTATATACAGTCCAAACATTCATACATACTCACTGTTATTTAAAATAAAGCATAGATATGCAAAATtctttacataaaaaaaaa

Function

NR:

description
LIM/homeobox protein Lhx8-like isoform X2

GO: NA

KEGG:

id description
K09375 LHX6_8; LIM homeobox protein 6/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603360.2 False 2079 mRNA 0.45 8 54702112 54716209
XM_021603362.2 False 2076 mRNA 0.45 8 54702112 54716209
XM_021603361.2 True 2098 mRNA 0.45 8 54702873 54716209

Neighbor

gene id symbol gene type direction distance location
LOC118964715 NA coding upstream 65175 54623690 ~ 54636937 (+)
fpgt fpgt coding upstream 81775 54617524 ~ 54620337 (+)
LOC110524055 NA coding upstream 88969 54595497 ~ 54613143 (+)
LOC118964620 NA coding upstream 106780 54589958 ~ 54595332 (+)
LOC110522872 LOC106613984 coding upstream 147723 54552355 ~ 54554389 (+)
LOC110524062 LOC106613542 coding downstream 102404 54818613 ~ 54833842 (+)
LOC110524063 LOC106613544 coding downstream 152162 54868248 ~ 54876340 (+)
LOC110522972 LOC106613545 coding downstream 160654 54876863 ~ 54888523 (+)
LOC110524066 LOC106613547 coding downstream 210124 54926333 ~ 54935194 (+)
LOC110522873 LOC106613548 coding downstream 239038 54955247 ~ 54957290 (+)
G416005 NA non-coding upstream 13230 54688582 ~ 54688882 (+)
G415946 NA non-coding upstream 88970 54590074 ~ 54613142 (+)
G415914 NA non-coding upstream 145776 54555076 ~ 54556336 (+)
G415887 NA non-coding upstream 188563 54503035 ~ 54513549 (+)
G415886 NA non-coding upstream 205723 54458230 ~ 54496389 (+)
G416362 NA non-coding downstream 119404 54835613 ~ 54837792 (+)
G416367 NA non-coding downstream 123153 54839362 ~ 54839580 (+)
G416377 NA non-coding downstream 142821 54859030 ~ 54859350 (+)
G416378 NA non-coding downstream 143232 54859441 ~ 54859821 (+)
G416382 NA non-coding downstream 143938 54860147 ~ 54860415 (+)
mutyh mutyh other upstream 351497 54346481 ~ 54395448 (+)
G415809 NA other upstream 371632 54330080 ~ 54330480 (+)
G415808 NA other upstream 372332 54329195 ~ 54329780 (+)
G415582 LOC106584099 other upstream 518682 54177929 ~ 54183430 (+)
G416857 NA other downstream 608436 55324645 ~ 55325271 (+)
G418077 LOC106613582 other downstream 1901681 56617890 ~ 56628617 (+)
G418119 LOC106613588 other downstream 2009976 56726185 ~ 56729821 (+)
G418251 rtca other downstream 2207715 56923924 ~ 56925176 (+)
LOC100135807 LOC106613594 other downstream 2227629 56943838 ~ 56958165 (+)

Expression


Co-expression Network