LOC110524063 (LOC106613544)


Basic Information

Item Value
gene id LOC110524063
gene name LOC106613544
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 54868248 ~ 54876340 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603374.2
agcaagggaagtttgcaacgtaagccctcagccctcgtttttaatggagtttgcgagtgtacaattacGTTCACTTCGGGCCTGAAAGGAAAGTCTGCCAAAACTTTAAAcctcaacatacaagtCTTCCgatggctgaaaacacaatcgtCGCGGGATGAAGGAATTTCTGCTCTGCAAGCGTAAACTCCTCAGACGTCAAGacatcatcagaagtgtccagtgttgccaactaattttcaggGTAGAAACATGAACCAAGAAAAATTAGCAAAACTTCAAGCCCAGGTCCGGATAGGAGGAAAGGGCTCTGCACGTAGGAAGAAGAAGGTCGTACACAGGACGGCAACAGCCGACGACAAAAAACTTCAGAGTTCGTTAAAGAAATTAGCTGTCAACAACATTGCTGGTATTGAGGAGGTAAACATGATCAAGGATGACGGCTCAGTGATCCACTTCAACAACCCCAAAGTGCAGGCATCTCTGTCGGCCAACACTTTCGCTATCACCGGCCATGCCGAGACCAAGCAGCTCACGGAGATGCTGCCGGGCATCCTCAGCCAGCTGGGCGCCGACAGCCTCACCAGCCTGCGCAAACTAGCAGAGCAGTTCCCTCGACAAGTGCTTGACAGCAAAACCCCTAAAGCAGAAGATATTGAAGAAGAAGACGACGATGTCCCAGACCTGGTGGAGAATTTTGACGAAGCATCAAAGAACGAGGCAAACTGATTGATCTTCCCCTTGAGACCCCATACAAGGATTGGAACTGCAATTAAGAAACTAAGGCGACTTCTCTGATGTTTTAACTTCTAGCTATGAAGACCTATCATTTCAAACACTATCCCGTCATCCAGAGACTTGTGTATTTTGAAATGTCCCAAGGATGCAGTCCTTATCAGACTTGCTTGCTCACTTAAACTCTCAACACATTGGTCAACGGTTCAGTACTTTTCACCACATTGTTAGTCTCGAACAGGATTGCGGTGGTCATTTTAATTAAAGCTAGTCTTAAAAATAATTTTGTTTTTACGAAACAAAATAAAGGTGATTAACATTTTC
>XM_021603372.2
tgtcactttcacaaggttggagtaataacatgttcgaCTACTTAGGCCGTTTgctcgaatctaggttgtgccttcaGATTTCGAGAAAAATATTTGTTCACTTCTCTCATTTACTCCTCAAACACCGGCTTGGATATTTGGTCTATTTTCGCAAGCTGTTTCCCGGAAGTCTTGCAATGTTGCGcttctgggtttagaaactcaaTGGCAATACGCAACAAAGCGTCCAGGCGGCTGGAAAACCACTCGAAGAAGAAGAAATGGGTAGAAACATGAACCAAGAAAAATTAGCAAAACTTCAAGCCCAGGTCCGGATAGGAGGAAAGGGCTCTGCACGTAGGAAGAAGAAGGTCGTACACAGGACGGCAACAGCCGACGACAAAAAACTTCAGAGTTCGTTAAAGAAATTAGCTGTCAACAACATTGCTGGTATTGAGGAGGTAAACATGATCAAGGATGACGGCTCAGTGATCCACTTCAACAACCCCAAAGTGCAGGCATCTCTGTCGGCCAACACTTTCGCTATCACCGGCCATGCCGAGACCAAGCAGCTCACGGAGATGCTGCCGGGCATCCTCAGCCAGCTGGGCGCCGACAGCCTCACCAGCCTGCGCAAACTAGCAGAGCAGTTCCCTCGACAAGTGCTTGACAGCAAAACCCCTAAAGCAGAAGATATTGAAGAAGAAGACGACGATGTCCCAGACCTGGTGGAGAATTTTGACGAAGCATCAAAGAACGAGGCAAACTGATTGATCTTCCCCTTGAGACCCCATACAAGGATTGGAACTGCAATTAAGAAACTAAGGCGACTTCTCTGATGTTTTAACTTCTAGCTATGAAGACCTATCATTTCAAACACTATCCCGTCATCCAGAGACTTGTGTATTTTGAAATGTCCCAAGGATGCAGTCCTTATCAGACTTGCTTGCTCACTTAAACTCTCAACACATTGGTCAACGGTTCAGTACTTTTCACCACATTGTTAGTCTCGAACAGGATTGCGGTGGTCATTTTAATTAAAGCTAGTCTTAAAAATAATTTTGTTTTTACGAAACAAAATAAAGGTGATTAACATTTTC
>XM_036977857.1
TTAAGCAGCGCGTCGGGCAAAGTAGAAACATGAACCAAGAAAAATTAGCAAAACTTCAAGCCCAGGTCCGGATAGGAGGAAAGGGCTCTGCACGTAGGAAGAAGAAGGTCGTACACAGGACGGCAACAGCCGACGACAAAAAACTTCAGAGTTCGTTAAAGAAATTAGCTGTCAACAACATTGCTGGTATTGAGGAGGTAAACATGATCAAGGATGACGGCTCAGTGATCCACTTCAACAACCCCAAAGTGCAGGCATCTCTGTCGGCCAACACTTTCGCTATCACCGGCCATGCCGAGACCAAGCAGCTCACGGAGATGCTGCCGGGCATCCTCAGCCAGCTGGGCGCCGACAGCCTCACCAGCCTGCGCAAACTAGCAGAGCAGTTCCCTCGACAAGTGCTTGACAGCAAAACCCCTAAAGCAGAAGATATTGAAGAAGAAGACGACGATGTCCCAGACCTGGTGGAGAATTTTGACGAAGCATCAAAGAACGAGGCAAACTGATTGATCTTCCCCTTGAGACCCCATACAAGGATTGGAACTGCAATTAAGAAACTAAGGCGACTTCTCTGATGTTTTAACTTCTAGCTATGAAGACCTATCATTTCAAACACTATCCCGTCATCCAGAGACTTGTGTATTTTGAAATGTCCCAAGGATGCAGTCCTTATCAGACTTGCTTGCTCACTTAAACTCTCAACACATTGGTCAACGGTTCAGTACTTTTCACCACATTGTTAGTCTCGAACAGGATTGCGGTGGTCATTTTAATTAAAGCTAGTCTTAAAAATAATTTTGTTTTTACGAAACAAAATAAAGGTGATTAACATTTTC
>XM_021603373.2
CGTCGGGCAAAGTTTGTGAAGATTAATGTTATGAATGGACAACACTAGTATCGAAAACTGGAACAAAAAGGAAATTGACTAAAATTGGAGTGGAGAATATGAATGTTAATGAATCACTTCTTGCTGGGATGCATATATAGGAGACCTATTTGAGGTGTCGAAATAGTGAAGTATGCGCTGGAAAAAGTGGAGTCTGTCAGACCAGGAGTTGTCTTAGTTTGATGAAGACCACTCCTGGTTTTTGGGATTTAAGGATTTAAGGAAAAAGtatgtttaactaggcaagtcagttaagaacagattatTTCGCCGGAAGATTCGCCCTCCTAGGTTCCCCTTGAGCCTGTGTAGGGATTTTTTTAGCTGAAAAGTTTTGTGATTTAgttcagtttatttattttagtttggtcgtgtatttttgtattttgttacaTTTTTGGGAATACTGTTTCCATcccgcacagtaggtggcggaatGCACATTACGTTGTGCGATCGCCAATATACCATAGAAGAAGATCTTCGTCATATCCTCCTATCTTTCGTTGCCGCATGTTTCCTCGGATATTTGTGGATCAGGTAGAAACATGAACCAAGAAAAATTAGCAAAACTTCAAGCCCAGGTCCGGATAGGAGGAAAGGGCTCTGCACGTAGGAAGAAGAAGGTCGTACACAGGACGGCAACAGCCGACGACAAAAAACTTCAGAGTTCGTTAAAGAAATTAGCTGTCAACAACATTGCTGGTATTGAGGAGGTAAACATGATCAAGGATGACGGCTCAGTGATCCACTTCAACAACCCCAAAGTGCAGGCATCTCTGTCGGCCAACACTTTCGCTATCACCGGCCATGCCGAGACCAAGCAGCTCACGGAGATGCTGCCGGGCATCCTCAGCCAGCTGGGCGCCGACAGCCTCACCAGCCTGCGCAAACTAGCAGAGCAGTTCCCTCGACAAGTGCTTGACAGCAAAACCCCTAAAGCAGAAGATATTGAAGAAGAAGACGACGATGTCCCAGACCTGGTGGAGAATTTTGACGAAGCATCAAAGAACGAGGCAAACTGATTGATCTTCCCCTTGAGACCCCATACAAGGATTGGAACTGCAATTAAGAAACTAAGGCGACTTCTCTGATGTTTTAACTTCTAGCTATGAAGACCTATCATTTCAAACACTATCCCGTCATCCAGAGACTTGTGTATTTTGAAATGTCCCAAGGATGCAGTCCTTATCAGACTTGCTTGCTCACTTAAACTCTCAACACATTGGTCAACGGTTCAGTACTTTTCACCACATTGTTAGTCTCGAACAGGATTGCGGTGGTCATTTTAATTAAAGCTAGTCTTAAAAATAATTTTGTTTTTACGAAACAAAATAAAGGTGATTAACATTTTC
>XM_021603371.2
ACACTAGTATCGAAAACTGGAACAAAAAGGAAATTGACTAAAATTGGAGTGGAGAATATGAATGTTAATGAATCACTTCTTGCTGGGATGCATATATAGGAGACCTATTTGAGGTGTCGAAATAGTGAAGTATGCGCTGGAAAAAGTGGAGTCTGTCAGACCAGGAGTTGTCTTAGTTTGATGAAGACCACTCCTGGTTTTTGGGATTTAAGGATTTAAGGAAAAAGtatgtttaactaggcaagtcagttaagaacagattatTTCGCCGGAAGATTCGCCCTCCTAGGTTCCCCTTGAGCCTGTGTAGGGATTTTTTTAGCTGAAAAGTTTTGTGATTTAgttcagtttatttattttagtttggtcgtgtatttttgtattttgttacaTTTTTGGGAATACTGTTTCCATcccgcacagtaggtggcggaatGCACATTACGTTGTGCGATCGCCAATATACCATAGAAGAAGATCTTCGTCATATCCTCCTATCTTTCGTTGCCGCATGTTTCCTCGGATATTTGTGGATCAGGTCTGGTATATTGTTTTTACGTCCATTTTAGAGTGGTTTTATGGTAGAAACATGAACCAAGAAAAATTAGCAAAACTTCAAGCCCAGGTCCGGATAGGAGGAAAGGGCTCTGCACGTAGGAAGAAGAAGGTCGTACACAGGACGGCAACAGCCGACGACAAAAAACTTCAGAGTTCGTTAAAGAAATTAGCTGTCAACAACATTGCTGGTATTGAGGAGGTAAACATGATCAAGGATGACGGCTCAGTGATCCACTTCAACAACCCCAAAGTGCAGGCATCTCTGTCGGCCAACACTTTCGCTATCACCGGCCATGCCGAGACCAAGCAGCTCACGGAGATGCTGCCGGGCATCCTCAGCCAGCTGGGCGCCGACAGCCTCACCAGCCTGCGCAAACTAGCAGAGCAGTTCCCTCGACAAGTGCTTGACAGCAAAACCCCTAAAGCAGAAGATATTGAAGAAGAAGACGACGATGTCCCAGACCTGGTGGAGAATTTTGACGAAGCATCAAAGAACGAGGCAAACTGATTGATCTTCCCCTTGAGACCCCATACAAGGATTGGAACTGCAATTAAGAAACTAAGGCGACTTCTCTGATGTTTTAACTTCTAGCTATGAAGACCTATCATTTCAAACACTATCCCGTCATCCAGAGACTTGTGTATTTTGAAATGTCCCAAGGATGCAGTCCTTATCAGACTTGCTTGCTCACTTAAACTCTCAACACATTGGTCAACGGTTCAGTACTTTTCACCACATTGTTAGTCTCGAACAGGATTGCGGTGGTCATTTTAATTAAAGCTAGTCTTAAAAATAATTTTGTTTTTACGAAACAAAATAAAGGTGATTAACATTTTC
>TU471976
CACACTTGTAGGCAATGTCTTGGAGACATTGGCTGCATTCCAAACTCAAAGTTGACAGCCCTTGGCCCTAAACCCTcagcccttgggggaatccccgcAGCCGTCGGttcaaatgattagccaagcaagggaagtttgcaacgtaagccctcagccctcgtttttaatggagtttgcgagtgtacaattacGTTCACTTCGGGCCTGAAAGGAAAGTCTGCCAAAACTTTAAAcctcaacatacaagtgtaagttcAAAGGAATGTAAATAAGTTAAactgtgctactaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603374.2 False 1059 mRNA 0.45 7 54868371 54876340
XM_021603372.2 False 1079 mRNA 0.45 6 54869685 54876340
XM_036977857.1 False 836 mRNA 0.45 6 54869986 54876340
XM_021603373.2 False 1394 mRNA 0.43 6 54869996 54876340
XM_021603371.2 False 1396 mRNA 0.42 6 54870037 54876340
TU471976 True 290 lncRNA 0.46 1 54868248 54868537

Neighbor

gene id symbol gene type direction distance location
LOC110524062 LOC106613542 coding upstream 34529 54818613 ~ 54833842 (+)
LOC110524059 LOC106613985 coding upstream 152162 54702112 ~ 54716209 (+)
LOC118964715 NA coding upstream 231434 54623690 ~ 54636937 (+)
fpgt fpgt coding upstream 248034 54617524 ~ 54620337 (+)
LOC110524055 NA coding upstream 255228 54595497 ~ 54613143 (+)
LOC110522972 LOC106613545 coding downstream 523 54876863 ~ 54888523 (+)
LOC110524066 LOC106613547 coding downstream 49993 54926333 ~ 54935194 (+)
LOC110522873 LOC106613548 coding downstream 78907 54955247 ~ 54957290 (+)
LOC110524067 LOC106613550 coding downstream 155862 55032202 ~ 55041553 (+)
LOC118964621 LOC106613552 coding downstream 206559 55082899 ~ 55097257 (+)
G416384 NA non-coding upstream 6179 54861751 ~ 54862192 (+)
G416382 NA non-coding upstream 7956 54860147 ~ 54860415 (+)
G416378 NA non-coding upstream 8550 54859441 ~ 54859821 (+)
G416377 NA non-coding upstream 9021 54859030 ~ 54859350 (+)
G416367 NA non-coding upstream 28791 54839362 ~ 54839580 (+)
G416438 NA non-coding downstream 12960 54889300 ~ 54889572 (+)
G416441 NA non-coding downstream 17793 54894133 ~ 54894347 (+)
G416529 NA non-coding downstream 75514 54951854 ~ 54952065 (+)
G416560 NA non-coding downstream 98319 54974659 ~ 55018194 (+)
G416589 NA non-coding downstream 144974 55021314 ~ 55021526 (+)
G415946 NA other upstream 255229 54590074 ~ 54613142 (+)
mutyh mutyh other upstream 517756 54346481 ~ 54395448 (+)
G415809 NA other upstream 537891 54330080 ~ 54330480 (+)
G415808 NA other upstream 538591 54329195 ~ 54329780 (+)
G415582 LOC106584099 other upstream 684941 54177929 ~ 54183430 (+)
G416857 NA other downstream 448305 55324645 ~ 55325271 (+)
G418077 LOC106613582 other downstream 1741550 56617890 ~ 56628617 (+)
G418119 LOC106613588 other downstream 1849845 56726185 ~ 56729821 (+)
G418251 rtca other downstream 2047584 56923924 ~ 56925176 (+)
LOC100135807 LOC106613594 other downstream 2067498 56943838 ~ 56958165 (+)

Expression


Co-expression Network