si:ch211-221n20.8 (LOC106613553)



Basic Information


Item Value
gene id si:ch211-221n20.8
gene name LOC106613553
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55102959 ~ 55122189 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_036977864.1
ACGCCGCGCCCTCAGGCAGCACTCAGAAGGAGAGCGATTTAGCTTGTTGTTCCTCCACTGCGGTTTGGGATTAAAGGAATGGGAAGTATAGAATTCCTGGACAGGATGTGGAGGAGTACAGCACAGCCCCTTACGTCGCGTTGCTGGATTGGTTTTTGAGGAAAGACAACTCCACACTATTTATCCCGCATCTGGAGGAGACCGTGGAAGAAACGCGTAAATTGAAACCTCGCTCATCAAGTGGACCCAAATCGACTTTATCTGTTACTGGGTCAGGAGAGGATGCCACGCCCTCGGACTCACCTTCTGGTGCTGCTGGCAGCGATATGTGTGGCAGAGCCCTTTACCACCCCCAATGGCAGCGACAACGAggtcctgaaacacacagaggcGTCACTCACCAAGAGCCAGAACCTAGAGATTGAGAACGCCATTGGGAACTTTAGCAGAACCGAGCAGGGGGGTGGACCAGCAGCAAcCCCGGCAGCCTCGTTCAACACCACAtctaccccagccccagctcctACCCCCACCCCTCAGTGCCCAGGTAATCAGGTAGTGTTGGTGGGCAGCGAGGGCTGTGGATGCCCTGTTGGCATGGTGAATGTTGCAGGAGAGAACTGCACCTGCCCTGTGGGTTACACTCTGCAGCGAGCAGCAGGGTGCCTTGATGTAGATGAGTGTAAAGGGGAGGGGCCAGGGCCATGCAGTCTCCATGCCGACTGCACAAACACACCCGGCTCATACCTGTGCAAATGTCTCCGTGGTTACCTGATGGGTGCAGGAGGATGccaagATATTGATGAGTGTGCTCTAGCTGAAGTGACCGGGCTGCAGGCGTGTGGGTCTGGGGCAGACTGCAGGAACACCCTTGGATCCTTCTCATGTTTCTGTCCAGTTGGATACGTTATGGCTCTTGACGGACACAGTTGTGTGGACGTTGATGAGTGCAGCTTTGAGGAGCAGTGTCGCAGGGAGCTGGGGAACGTGTGTGTGAACACCCCTGGTAGCTTCGTGTGTCAATGTCAGCCTGGCTTCAGAGCAGAGGTCCCAGCCTGCATCGatgTGGATGAGTGTAAGGAAACTCCAGATGTGTGTGCtggtcagggtgtgtgtgagaacacTTTTGGGAGTTATAAGTGTGTCTGCCAAAGAGGTTACCGGGGCAATGGCACATACTGTGAAGATGAGAATGAGTGTGCATCAGGGCGTCACGGTTGTGATACTAATGCTCGCTGTGGGAACATCATTGGCTCCTACTTCTGCCAGTGTTACCAGGGCTTCAATGGGGATGGCCTCTCTTGCTTCGATGTTGATGAGTGTGCCCTGAGCAATGGTCACTGTGAGCACAACTGCACCAACGAGCCAGGAGGCTACAGCTGCCACTGTGGCATAGGCTACCAGCTAGCCCAGGATGGACACAACTGCTCAgACGTTGATGAGTGTGTGGTGCAGAACGGGACGTGTGAGCAGGTGTGCACCAACACGCAGGGCTCCTTCCTGTGTTCCTGCCAACCTGGCTACCAGCTTCATATCGACCGCCACAGCTGTGTAGatatCGACGAGTGTAAGCTCCAGAATGGGGGCTGCTCCCACACCTGCACCAACACACCGGGGGGGCACACGTGTTCCTGTCCCGCCCCTCTACTGCTGCACTCGGACAATACCAGCTGTGTCAATGTGACCTCGTGCGACTTTAGGAGAGGCGGCTGTGACCACGTGTGTACTGTGCGCGCCGAGGGGCTTCTCTACTGTAGCTGCAGTACCGGATGGCAACTGGGCAAGGACCTGAGGAGTTGCCTGGatgTGAATGAGTGTGGGGACTTCACTAATGGTGGTTGTGAGCAGCTGTGCCAGAACCACCCTGGTGGCTTTAACTGCAGCTGCGGGGAGGGCTATGTAGCTCGTACTGACGACCCCACCAAGTGCCAACCGGTGTGTGACCCCCCATGTCAGAACTATGGAGCATGCGTGGCCCCTCACTCTTGTGACTGTCCTGCAGGTTACCCTGGTCCTGGCTGTtcagCAATGTGCTCCCCGCCCTGTGCCCATGGAGGAACATGTATGCGCTGGGACATGTGTCTCTGCCCACCTGGCTGGACGGGGACTGGCTGTCACACAGCTGTGTGTGAGCTGCCCTGTGCTAACGGTGGTCGCTGTGTGCGTCCGGAGACCTGCCATTGCCCATCGGACTACACCGGCCCTCAGTGCCTTTCACctCTGTGCACACCAGCCTGTCAGAACGGAGGGAGGTGCGTAGATGTCAACAAATGCACGTGTGTCGTAGGGTGGCAAGGCGCTCGCTGCCAGATAGAGCCTGTGCAGTGCCAAAAGCCCTGTAAAAATGGTGGCGTGTGTGTGGGCCTCAACAGATGTCGCTGTGCCAGTGACTTTACTGGGAGTCTCTGTGAGACagCGGTGACCACCCCCTGTGTGCCCCCTTGTCACCACGGTGCCACCTGTAGTCCTCACAACAAATGCACCTGTCCAGAGGGCGCGGCCGGGATCCGCTGTGAGAGGCTGACGTGTCCTGTGGTCACTACCGTGGTCAGTATGGCCCGTGCCGTCAGGAAGGGTGTGAGGGAGAGTTACGTTGACCGCTGTGGACCCCTGGGAGTTCAGCTCTGCACCAAGTACAGGATCAACCAGGCGCGTGTGTATCTGCAAGCTTACAGGGTGGGCTATAGGGTCCAATGtcctgagaagaatgggagatgaACTGTTGCCCTGGTTACCAAGACCCCACATCCCCTGGGAAGCTCCACACACATGGTCTCTGTGAATGGTAAAAAAAGACACTTGTGATATAAGAGGCTGTTTGATTCACAACTCAGTAGGAAAATCAACCAATAGAGGTCATACTCATGAGCCGACCCCAAACCAAACGAGCCAACACCGGACATGTCTCAAATTTCCTCGGTGTCTGCACTGATTGTTTATGCAATataccaaacttttttttttcccACGAGCTATGACCTCGAAATGGAAAATGTTCATTTTTATATGTTGTTTTTAATGCTCCTGTATGGCAGCTGGACGTTAGTAAAAACATTTTGTTGGA
>XM_036977866.1
GACGCCGCGCCCTCAGGCAGCACTCAGAAGGAGAGCGATTTAGCTTGTTGTTCCTCCACTGCGGTTTGGGATTAAAGGAATGGGAAGTATAGAATTCCTGGACAGGATGTGGAGGAGTACAGCACAGCCCCTTACGTCGCGTTGCTGGATTGGTTTTTGAGGAAAGACAACTCCACACTATTTATCCCGCATCTGGAGGAGACCGTGGAAGAAACGCGTAAATTGAAACCTCGCTCATCAAGTGGACCCAAATCGACTTTATCTGTTACTGGGTCAGGAGAGGATGCCACGCCCTCGGACTCACCTTCTGGTGCTGCTGGCAGCGATATGTGTGGCAGAGCCCTTTACCACCCCCAATGGCAGCGACAACGAggtcctgaaacacacagaggcGTCACTCACCAAGAGCCAGAACCTAGAGATTGAGAACGCCATTGGGAACTTTAGCAGAACCGAGCAGGGGGGTGGACCAGCAGCAAcCCCGGCAGCCTCGTTCAACACCACAtctaccccagccccagctcctACCCCCACCCCTCAGTGCCCAGATGTAGATGAGTGTAAAGGGGAGGGGCCAGGGCCATGCAGTCTCCATGCCGACTGCACAAACACACCCGGCTCATACCTGTGCAAATGTCTCCGTGGTTACCTGATGGGTGCAGGAGGATGccaagATATTGATGAGTGTGCTCTAGCTGAAGTGACCGGGCTGCAGGCGTGTGGGTCTGGGGCAGACTGCAGGAACACCCTTGGATCCTTCTCATGTTTCTGTCCAGTTGGATACGTTATGGCTCTTGACGGACACAGTTGTGTGGACGTTGATGAGTGCAGCTTTGAGGAGCAGTGTCGCAGGGAGCTGGGGAACGTGTGTGTGAACACCCCTGGTAGCTTCGTGTGTCAATGTCAGCCTGGCTTCAGAGCAGAGGTCCCAGCCTGCATCGatgTGGATGAGTGTAAGGAAACTCCAGATGTGTGTGCtggtcagggtgtgtgtgagaacacTTTTGGGAGTTATAAGTGTGTCTGCCAAAGAGGTTACCGGGGCAATGGCACATACTGTGAAGATGAGAATGAGTGTGCATCAGGGCGTCACGGTTGTGATACTAATGCTCGCTGTGGGAACATCATTGGCTCCTACTTCTGCCAGTGTTACCAGGGCTTCAATGGGGATGGCCTCTCTTGCTTCGATGTTGATGAGTGTGCCCTGAGCAATGGTCACTGTGAGCACAACTGCACCAACGAGCCAGGAGGCTACAGCTGCCACTGTGGCATAGGCTACCAGCTAGCCCAGGATGGACACAACTGCTCAgACGTTGATGAGTGTGTGGTGCAGAACGGGACGTGTGAGCAGGTGTGCACCAACACGCAGGGCTCCTTCCTGTGTTCCTGCCAACCTGGCTACCAGCTTCATATCGACCGCCACAGCTGTGTAGatatCGACGAGTGTAAGCTCCAGAATGGGGGCTGCTCCCACACCTGCACCAACACACCGGGGGGGCACACGTGTTCCTGTCCCGCCCCTCTACTGCTGCACTCGGACAATACCAGCTGTGTCAATGTGACCTCGTGCGACTTTAGGAGAGGCGGCTGTGACCACGTGTGTACTGTGCGCGCCGAGGGGCTTCTCTACTGTAGCTGCAGTACCGGATGGCAACTGGGCAAGGACCTGAGGAGTTGCCTGGatgTGAATGAGTGTGGGGACTTCACTAATGGTGGTTGTGAGCAGCTGTGCCAGAACCACCCTGGTGGCTTTAACTGCAGCTGCGGGGAGGGCTATGTAGCTCGTACTGACGACCCCACCAAGTGCCAACCGGTGTGTGACCCCCCATGTCAGAACTATGGAGCATGCGTGGCCCCTCACTCTTGTGACTGTCCTGCAGGTTACCCTGGTCCTGGCTGTtcagCAATGTGCTCCCCGCCCTGTGCCCATGGAGGAACATGTATGCGCTGGGACATGTGTCTCTGCCCACCTGGCTGGACGGGGACTGGCTGTCACACAGCTGTGTGTGAGCTGCCCTGTGCTAACGGTGGTCGCTGTGTGCGTCCGGAGACCTGCCATTGCCCATCGGACTACACCGGCCCTCAGTGCCTTTCACctCTGTGCACACCAGCCTGTCAGAACGGAGGGAGGTGCGTAGATGTCAACAAATGCACGTGTGTCGTAGGGTGGCAAGGCGCTCGCTGCCAGATAGAGCCTGTGCAGTGCCAAAAGCCCTGTAAAAATGGTGGCGTGTGTGTGGGCCTCAACAGATGTCGCTGTGCCAGTGACTTTACTGGGAGTCTCTGTGAGACagCGGTGACCACCCCCTGTGTGCCCCCTTGTCACCACGGTGCCACCTGTAGTCCTCACAACAAATGCACCTGTCCAGAGGGCGCGGCCGGGATCCGCTGTGAGAGGCTGACGTGTCCTGTGGTCACTACCGTGGTCAGTATGGCCCGTGCCGTCAGGAAGGGTGTGAGGGAGAGTTACGTTGACCGCTGTGGACCCCTGGGAGTTCAGCTCTGCACCAAGTACAGGATCAACCAGGCGCGTGTGTATCTGCAAGCTTACAGGGTGGGCTATAGGGTCCAATGtcctgagaagaatgggagatgaACTGTTGCCCTGGTTACCAAGACCCCACATCCCCTGGGAAGCTCCACACACATGGTCTCTGTGAATGGTAAAAAAAGACACTTGTGATATAAGAGGCTGTTTGATTCACAACTCAGTAGGAAAATCAACCAATAGAGGTCATACTCATGAGCCGACCCCAAACCAAACGAGCCAACACCGGACATGTCTCAAATTTCCTCGGTGTCTGCACTGATTGTTTATGCAATataccaaacttttttttttcccACGAGCTATGACCTCGAAATGGAAAATGTTCATTTTTATATGTTGTTTTTAATGCTCCTGTATGGCAGCTGGACGTTAGTAAAAACATTTTGTTGGA
>XM_036977865.1
GGACGCCGCGCCCTCAGGCAGCACTCAGAAGGAGAGCGATTTAGCTTGTTGTTCCTCCACTGCGGTTTGGGATTAAAGGAATGGGAAGTATAGAATTCCTGGACAGGATGTGGAGGAGTACAGCACAGCCCCTTACGTCGCGTTGCTGGATTGGTTTTTGAGGAAAGACAACTCCACACTATTTATCCCGCATCTGGAGGAGACCGTGGAAGAAACGCGTAAATTGAAACCTCGCTCATCAAGTGGACCCAAATCGACTTTATCTGTTACTGGGTCAGGAGAGGATGCCACGCCCTCGGACTCACCTTCTGGTGCTGCTGGCAGCGATATGTGTGGCAGAGCCCTTTACCACCCCCAATGGCAGCGACAACGAggtcctgaaacacacagaggcGTCACTCACCAAGAGCCAGAACCTAGAGATTGAGAACGCCATTGGGAACTTTAGCAGAACCGAGCAGGGGGGTGGACCAGCAGCAAcCCCGGCAGCCTCGTTCAACACCACAtctaccccagccccagctcctACCCCCACCCCTCAGTGCCCAGGTAATCAGGTAGTGTTGGTGGGCAGCGAGGGCTGTGGATGCCCTGTTGGCATGGTGAATGTTGCAGGAGAGAACTGCACCTGCCCTGTGGGTTACACTCTGCAGCGAGCAGCAGGGTGCCTTGATGTAGATGAGTGTAAAGGGGAGGGGCCAGGGCCATGCAGTCTCCATGCCGACTGCACAAACACACCCGGCTCATACCTGTGCAAATGTCTCCGTGGTTACCTGATGGGTGCAGGAGGATGccaagATATTGATGAGTGTGCTCTAGCTGAAGTGACCGGGCTGCAGGCGTGTGGGTCTGGGGCAGACTGCAGGAACACCCTTGGATCCTTCTCATGTTTCTGTCCAGTTGGATACGTTATGGCTCTTGACGGACACAGTTGTGTGGACGTTGATGAGTGCAGCTTTGAGGAGCAGTGTCGCAGGGAGCTGGGGAACGTGTGTGTGAACACCCCTGGTAGCTTCGTGTGTCAATGTCAGCCTGGCTTCAGAGCAGAGGTCCCAGCCTGCATCGatgTGGATGAGTGTAAGGAAACTCCAGATGTGTGTGCtggtcagggtgtgtgtgagaacacTTTTGGGAGTTATAAGTGTGTCTGCCAAAGAGGTTACCGGGGCAATGGCACATACTGTGAAGATGAGAATGAGTGTGCATCAGGGCGTCACGGTTGTGATACTAATGCTCGCTGTGGGAACATCATTGGCTCCTACTTCTGCCAGTGTTACCAGGGCTTCAATGGGGATGGCCTCTCTTGCTTCGATGTTGATGAGTGTGCCCTGAGCAATGGTCACTGTGAGCACAACTGCACCAACGAGCCAGGAGGCTACAGCTGCCACTGTGGCATAGGCTACCAGCTAGCCCAGGATGGACACAACTGCTCAgACGTTGATGAGTGTGTGGTGCAGAACGGGACGTGTGAGCAGGTGTGCACCAACACGCAGGGCTCCTTCCTGTGTTCCTGCCAACCTGGCTACCAGCTTCATATCGACCGCCACAGCTGTGTAGatatCGACGAGTGTAAGCTCCAGAATGGGGGCTGCTCCCACACCTGCACCAACACACCGGGGGGGCACACGTGTTCCTGTCCCGCCCCTCTACTGCTGCACTCGGACAATACCAGCTGTGTCAATGTGACCTCGTGCGACTTTAGGAGAGGCGGCTGTGACCACGTGTGTACTGTGCGCGCCGAGGGGCTTCTCTACTGTAGCTGCAGTACCGGATGGCAACTGGGCAAGGACCTGAGGAGTTGCCTGGatgTGAATGAGTGTGGGGACTTCACTAATGGTGGTTGTGAGCAGCTGTGCCAGAACCACCCTGGTGGCTTTAACTGCAGCTGCGGGGAGGGCTATGTAGCTCGTACTGACGACCCCACCAAGTGCCAACCGGTGTGTGACCCCCCATGTCAGAACTATGGAGCATGCGTGGCCCCTCACTCTTGTGACTGTCCTGCAGGTTACCCTGGTCCTGGCTGTtcagCTGTGTGTGAGCTGCCCTGTGCTAACGGTGGTCGCTGTGTGCGTCCGGAGACCTGCCATTGCCCATCGGACTACACCGGCCCTCAGTGCCTTTCACctCTGTGCACACCAGCCTGTCAGAACGGAGGGAGGTGCGTAGATGTCAACAAATGCACGTGTGTCGTAGGGTGGCAAGGCGCTCGCTGCCAGATAGAGCCTGTGCAGTGCCAAAAGCCCTGTAAAAATGGTGGCGTGTGTGTGGGCCTCAACAGATGTCGCTGTGCCAGTGACTTTACTGGGAGTCTCTGTGAGACagCGGTGACCACCCCCTGTGTGCCCCCTTGTCACCACGGTGCCACCTGTAGTCCTCACAACAAATGCACCTGTCCAGAGGGCGCGGCCGGGATCCGCTGTGAGAGGCTGACGTGTCCTGTGGTCACTACCGTGGTCAGTATGGCCCGTGCCGTCAGGAAGGGTGTGAGGGAGAGTTACGTTGACCGCTGTGGACCCCTGGGAGTTCAGCTCTGCACCAAGTACAGGATCAACCAGGCGCGTGTGTATCTGCAAGCTTACAGGGTGGGCTATAGGGTCCAATGtcctgagaagaatgggagatgaACTGTTGCCCTGGTTACCAAGACCCCACATCCCCTGGGAAGCTCCACACACATGGTCTCTGTGAATGGTAAAAAAAGACACTTGTGATATAAGAGGCTGTTTGATTCACAACTCAGTAGGAAAATCAACCAATAGAGGTCATACTCATGAGCCGACCCCAAACCAAACGAGCCAACACCGGACATGTCTCAAATTTCCTCGGTGTCTGCACTGATTGTTTATGCAATataccaaacttttttttttcccACGAGCTATGACCTCGAAATGGAAAATGTTCATTTTTATATGTTGTTTTTAATGCTCCTGTATGGCAGCTGGACGTTAGTAAAAACATTTTGTTGGA
>TU472373
AGAGCCTGTGCAGTGCCAAAAGCCCTGTAAAAATGGTGGCGTGTGTGTGGGCCTCAACAGATGTCGCTGTGCCAGTGACTTTACTGGGAGTCTCTGTGAGACagCGGTGACCACCCCCTGTGTGCCCCCTTGTCACCACGGTGCCACCTGTAGTCCTCACAACAAATGCACCTGTCCAGAGGGCGCGGCCGGGATCCGCTGTGAGAGGCTGACGTGTCCTGTGGTCACTACCGTGGTCAGTATGGCCCGTGCCGTCAGGAAGGGTGTGAGGGAGAGTTACGTTGACCGCTGTGGACCCCTGGGAGTTCAGCTCTGCACCAAGTACAGGATCAACCAGGCGCGTGTGTATCTGCAAGCTTACAGGGTGGGCTATAGGGTCCAATGtcctgagaagaatgggagatgaACTGTTGCCCTGGTTACCAAGACCCCACATCCCCTGGGAAGCTCCACACACATGGTCTCTGTGAATGGTAAAAAAAGACACTTGTGATATAAGAGGCTGTTTGATTCACAACTCAGTAGGAAAATCAACCAATAGAGGTCATACTCATGAGCCGACCCCAAACCAAACGAGCCAACACCGGACATGTCTCAAATTTCCTCGGTGTCTGCACTGATTGTTTATGCAATataccaaacttttttttttcccACGAG

Function


NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_036977864.1 False 3064 mRNA 0.55 22 55102959 55122187
XM_036977866.1 False 2942 mRNA 0.55 22 55102959 55122188
XM_036977865.1 False 2970 mRNA 0.55 21 55102959 55122189
TU472373 True 660 lncRNA 0.53 4 55103051 55104200

Neighbor


gene id symbol gene type direction distance location
LOC110524069 LOC106613551 coding downstream 29008 55072085 ~ 55073951 (-)
LOC110524068 LOC100286622 coding downstream 31021 55051724 ~ 55071938 (-)
LOC118964528 NA coding downstream 97512 54997686 ~ 55005447 (-)
LOC110524065 elov7 coding downstream 178207 54899096 ~ 54924752 (-)
slc44a5b LOC106613541 coding downstream 332673 54717326 ~ 54770286 (-)
LOC110524071 LOC106613554 coding upstream 1428 55123617 ~ 55181458 (-)
LOC110524072 LOC106613556 coding upstream 60425 55182614 ~ 55236572 (-)
LOC118964623 NA coding upstream 125944 55248133 ~ 55250837 (-)
LOC110522973 patj coding upstream 146257 55268446 ~ 55489840 (-)
LOC110524078 nfia coding upstream 428432 55546163 ~ 55726193 (-)
G416733 NA non-coding downstream 5662 55094943 ~ 55097297 (-)
G416712 NA non-coding downstream 35849 55045989 ~ 55067110 (-)
G416709 NA non-coding downstream 59883 55042831 ~ 55043076 (-)
G416696 NA non-coding downstream 84400 55018355 ~ 55018559 (-)
G416761 NA non-coding upstream 25890 55148079 ~ 55148352 (-)
G416777 NA non-coding upstream 44264 55166453 ~ 55166685 (-)
G416778 NA non-coding upstream 44976 55167165 ~ 55167470 (-)
G417386 NA non-coding upstream 114899 55237088 ~ 55237467 (-)
G416110 NA other downstream 716731 54363286 ~ 54392411 (-)
G415464 nexn other downstream 1097286 54002448 ~ 54005673 (-)
G415420 NA other downstream 1210053 53890760 ~ 53892906 (-)
G415256 LOC106613513 other downstream 1484095 53617683 ~ 53618864 (-)
G412613 NA other downstream 3490397 51558378 ~ 51612562 (-)
G417527 NA other upstream 486646 55608835 ~ 55609730 (-)
LOC110522975 LOC106613586 other upstream 1586609 56703896 ~ 56711499 (-)
G418830 NA other upstream 1711837 56834026 ~ 56834595 (-)
G419603 NA other upstream 2488870 57611059 ~ 57611567 (-)
G416744 NA non-coding upstream 8557 55112757 ~ 55113201 (-)

Expression



Co-expression Network