LOC118964623


Basic Information

Item Value
gene id LOC118964623
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55248133 ~ 55250837 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051764.1
AGGGTAATCCATGTCTGATGTTTTAGATTCACTGAAGTGCTGCGTGGAAACTGGAAGTGAGGTCTATATAATTCCACATCACGTCCAGTGCGCCACTTAGTATGGGGAGCGAGCGGAACACAGGCGCAATGTGTGGATTGGATCGATCGCGTAGGGATGCCTTGAGAGACTTGGCAGAATTTGGTGTAAAGCTCAAAGGACCACCTTGCAGACAGAGATAAGACGGCCTGCAGGTTCATCCGTCAAAGCGGGAGCTCTCTCTGTCACGACCATAGATATGGTCATTGCTCACGACCAACATCCTGTCAGTAAAGACCAGCGACGAACATTGAGATCCAGAGGAAGATTGTCATTAACTCTCGAAGTTCCAGAATGGAgtgaaaatggcagccatattggtcagggagaaatccaacccagtcttattggaatgaatggcagaagaggcataatcctgattttgcttatgcaggaaaataaaacaaaaacgtGATGTATCAAAAATGGTATAATATAGTTATTGTCAACCTCAAATATTGTCATATAATCATAAATACAGTTTACAAGATTTATATAGGTTATTGTTATAAATAGCTTCta
>TU473082
attatttcTGTTCTTAGCCTACTTTGTTGCGTGTTCATGATTTGAGTTTCAAAATAATCAGTTCCTTGCTCCTCAGTAAAGTTCTAACGTCATGTGAAAAGGGAATTGGTGTCGTTTTTTTCACCACCACTGTGGGAATAGTTTTTGGGCTACAGCTTGTAGGGCACGTAAAATGAAATGGAATAAGAGTGCGTTTTGCGTCGTTTATTTATGAGACTACTGAGGCTTTGAAAGCTTGAACCTTAATTGAGCCACAGTCCGCAGAACGTTGTGCACCGCCAACCTTTTCATTCTATAAAATGTGTAGGTGCGCTAGGCCAtcacacatttttacaaaaacattGCGGTAGGCTACATCATTTTCTGTTTCACAATAGCCTATGGAGATATAATAGCCGAATGCATAGCTAACTTATATTTAAAATAGATTTGTTGTTCATTGTTGCAAAATAAAATGATCACCCATAAATTAATCTTAGCCTCTCGGCTAGCATTCCCTGAGTGTGTAGGCTAGTCTTGTTTGATTTAAATGAAAGCGTCGATAGACTGAGGACATATTATCAAAACGAAAAAATATTTGACTATATCGAATCTTTGTCCATGTTTCGTGTTCAATCCCATTTTATTGGTAGATAAAACGAATGCTAATTCGATAGGCTAAATGATGTTTCACTTCACCGAGAAAACAAACGTCAACCCGAAATAGGAACGGCCAATGATCAACAATGTTCCAACTATCTATTCGCATTATCAATAACATGGCCATAAATCGACAACAACATATGTGACTTGATAAGGCCTATTTGGGTGTGTTGTCCTTACCATAGCCGGAGTGTTGTTGATCGAGTAGCCTATGTGTGGAGCCATTTTGTCGAGGGTAATCCATGTCTGATGTTTTAGATTCACTGAAGTGCTGCGTGGAAACTGGAAGTGAGGTCTATATAATTCCACATCACGTCCAGTGCGCCACTTAGTATGGGGAGCGAGCGGAACACAGGCGCAATGTGTGGATTGGATCGATCGCGTAGGGATGCCTTGAGAGACTTGGCAGAATTTGGTGTAAAGCTCAAAGGACCACCTTGCAGACAGAGATAAGACGGCCTGCAGGTTCATCCGTCAAAGCGGGAGCTCTCTCTGTCACGACCATAGATATGGTCATTGCTCACGACCAACATCCTGTCAGTAAAGACCAGCGACGAACATTGAGATCCAGAGGAAGATTGTCATTAACTCTCGAAGTTCCAGAATGGAgtgaaaatggcagccatattggtcagggagaaatccaacccagtcttattggaatgaatggcagaagaggcataatcctgattttgcttatgcaggaaaataaaacaaaaacgtGATGTATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051764.1 False 600 mRNA 0.42 3 55248133 55249963
TU473082 True 1373 lncRNA 0.41 3 55248234 55250837

Neighbor

gene id symbol gene type direction distance location
LOC110524072 LOC106613556 coding downstream 11561 55182614 ~ 55236572 (-)
LOC110524071 LOC106613554 coding downstream 66675 55123617 ~ 55181458 (-)
si:ch211-221n20.8 LOC106613553 coding downstream 125944 55102959 ~ 55122189 (-)
LOC110524069 LOC106613551 coding downstream 174182 55072085 ~ 55073951 (-)
LOC110524068 LOC100286622 coding downstream 176195 55051724 ~ 55071938 (-)
LOC110522973 patj coding upstream 18483 55268446 ~ 55489840 (-)
LOC110524078 nfia coding upstream 300658 55546163 ~ 55726193 (-)
nphs2 LOC106613567 coding upstream 621237 55871200 ~ 55875392 (-)
LOC110524086 LOC106613573 coding upstream 855639 56105602 ~ 56136576 (-)
LOC118964529 NA coding upstream 961775 56211738 ~ 56214599 (-)
G417386 NA non-coding downstream 10666 55237088 ~ 55237467 (-)
G416778 NA non-coding downstream 80663 55167165 ~ 55167470 (-)
G416777 NA non-coding downstream 81448 55166453 ~ 55166685 (-)
G416761 NA non-coding downstream 99781 55148079 ~ 55148352 (-)
G416744 NA non-coding downstream 134932 55112757 ~ 55113201 (-)
G417357 NA non-coding upstream 1577 55251540 ~ 55255098 (-)
G417397 NA non-coding upstream 26800 55276763 ~ 55279968 (-)
G417401 NA non-coding upstream 45740 55295703 ~ 55301442 (-)
G417405 NA non-coding upstream 60935 55310898 ~ 55317130 (-)
G417406 NA non-coding upstream 65278 55315241 ~ 55322745 (-)
G416110 NA other downstream 861905 54363286 ~ 54392411 (-)
G415464 nexn other downstream 1242460 54002448 ~ 54005673 (-)
G415420 NA other downstream 1355227 53890760 ~ 53892906 (-)
G415256 LOC106613513 other downstream 1629269 53617683 ~ 53618864 (-)
G417527 NA other upstream 358872 55608835 ~ 55609730 (-)
LOC110522975 LOC106613586 other upstream 1458835 56703896 ~ 56711499 (-)
G418830 NA other upstream 1584063 56834026 ~ 56834595 (-)
G419603 NA other upstream 2361096 57611059 ~ 57611567 (-)
LOC110524128 LOC107602773 other upstream 2370091 57612040 ~ 57627128 (-)

Expression


Co-expression Network