nphs2 (LOC106613567)


Basic Information

Item Value
gene id nphs2
gene name LOC106613567
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 55871200 ~ 55875392 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603403.2
AGTAGGGAGGAAGGATAAACAGCAAAAGACAGCGGCTGAGGAAGAGAAGGGCAGTTGAAACCACCACTAGCTTTGGGTTGGATGCTTCTTCTCATCACAGAGATTCCAAGAGGGATGGAGAAACGTCCGGAGTCAGCTTCCCCTCGCCGCACTCCGCGAGCAGGGAGGGTGGCTAAAAGAGAACATTCTAGGTCTCCGACTTCCAGGGGCCGCCATCACAAGGGCACCAAGACAGTGAGGCTCCCTGAGGAacatgagaagagagaggggcCAAAAAGGGATACCCGGGAGGCAGAGACCAACGAAGAGGCGGATAAAGAGATAGACAGGCCAGTCAAGTCCACGTCTACTGTTGTGGATGTGGAtaatgtgagagagaaagagaggggagaggagaacgaGGAGTTCATGGCGCTACTAGAGAGTGAATGGCAGGAGGAAGGCGTGAAGCCGAGGAGTCTTGGAGTGTGTGAGTGGCTACTCATGGTGTTGGCTCTAACCCTGGTCATTCTGTTCTTTCCCATCTCCATCTGGTTCTGTGTGAAGGTTGTGAGGGAGCATGAAAGAGCTGTGATCTTCAGACTGGGTCACCTACTGCGAGGGAGACCCAGGGGACCAGGTCTACTTTTCTACCTCCCACTACTCGATGTTTTCCAGAAAGTGGACATCCGTCTAAAAATGCTCAAGGTCCCAGCTCACACGGTGGTGACCAAGGATCTGGTGAGCACGGAGCTGAGCGCGGTGTGTTACTACCGTATAGAGAATGTGGCTCTGTGCAGCACGGCCCTGTCGGGTGTGAGTGCCGTGCTGCAGGCCCTGGTACAGGTGGCAGACAGAGATGTTCTTGCCCACCACAACTTCACCCACATCCTGCTGGACAGGAAGAGAATCGCCCAGGAGATCCAGGTGGCTATCGATTCTGTAGCTTGTCAGTGGGGGATCAAGGTGGAGAGAGCAGAAATAGAGGATCTTTCTCTCCCCATTGAGCTGCAGCAAAGCCTAGCGGCAGAGGCTGAGGCTAAGAGACAAGCCCAAATCAAGGTGAttgcagcagagggagagagggcagccTGCGAGGCTCTGAAGGCATCTCTGGACTCCCTCTCTGGTTCCCCGGCCGCCATCCACCTCCGTCTCCTCCAGCTGCTACACACCCTCCGCACCGAACGCCCAGCACTGGTCCTCACCCTCCCCTCGAACCTCCTCACCCTGCCCTGTGACCCCTCACCCTTAACCTTACCCGCCCCAGCTCCAAACCTGGCTCCAGCCAGTCCCATCCCAAAAGGGGGAGAAACCAAAGAGGAGCGGAAGACTGACTCGCCGATGATGtagtagacagagagaaagggaagcaTCTTAATTCGGGTGCCTCTCAATTGTCTGAAGTGGCTGCACTGGTCTAAAGAGCTGTGTGGTGGGTACCAGGGAACCTGATTCTGCCACTCCAGTTCTTTCCTATCAGTGCTGATGAAGTGAAGGAAGCAGAGGAGGCCACTTGAGATTATTGATATGCACCCCTCATATCAGATTGAAGAAGTGTGTAAATCTTATTCGGTGATTGTTTCGTTTTTTCGTCTGTAAAGTAATGTTAGTCAGTATAGAGATGAGTGTTTTTATTGTATCATTTATACAATAAACTGATGACACACACCACCTAAATTTAGACAGTGTGAGGGTAAATAGGGTccataataaatcaataataatgataataatattgtTTAAAAAAAGGAACCATACAGCATGTTTCACACCatttaaatgtttgtatttttatttcaacctttaacttggcaagtcagttaagaacaaattgtgaCAAATTCTTACCAGTAAGCCTGTAGGACATGATTGCTTAACAAATAGCATGCAAAtgacagaacaacaacaaaaaatacaaatgatTAAATACTGTTGAATGCCCAGACATGTGCTCCTCAGACTTCACTGTGCATTCATTTGTCAAATACAGGGGAGCCGAGTTCC

Function

NR:

description
podocin-like

GO:

id name namespace
GO:0032835 glomerulus development biological_process

KEGG:

id description
K18268 NPHS2; podocin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603403.2 True 1986 mRNA 0.50 8 55871200 55875392

Neighbor

gene id symbol gene type direction distance location
LOC110524078 nfia coding downstream 145007 55546163 ~ 55726193 (-)
LOC110522973 patj coding downstream 383233 55268446 ~ 55489840 (-)
LOC118964623 NA coding downstream 621237 55248133 ~ 55250837 (-)
LOC110524072 LOC106613556 coding downstream 634628 55182614 ~ 55236572 (-)
LOC110524071 LOC106613554 coding downstream 689742 55123617 ~ 55181458 (-)
LOC110524086 LOC106613573 coding upstream 230210 56105602 ~ 56136576 (-)
LOC118964529 NA coding upstream 336346 56211738 ~ 56214599 (-)
LOC110524088 LOC106613575 coding upstream 365339 56240731 ~ 56383335 (-)
LOC110524089 LOC106613577 coding upstream 580723 56456115 ~ 56459513 (-)
LOC110524090 LOC106613576 coding upstream 585387 56460779 ~ 56485866 (-)
G417609 rab3b non-coding downstream 23143 55793584 ~ 55848057 (-)
G417615 LOC106613563 non-coding downstream 83986 55786961 ~ 55787214 (-)
G417612 LOC106613563 non-coding downstream 88970 55781788 ~ 55782230 (-)
G417611 LOC106613563 non-coding downstream 91148 55779713 ~ 55780052 (-)
G417604 LOC106613563 non-coding downstream 96526 55774341 ~ 55774674 (-)
G417755 NA non-coding upstream 124480 55999872 ~ 56007111 (-)
G417771 NA non-coding upstream 166088 56041480 ~ 56121609 (-)
G418505 NA non-coding upstream 343353 56218745 ~ 56218980 (-)
G418584 NA non-coding upstream 535681 56411073 ~ 56411429 (-)
G418590 NA non-coding upstream 546946 56422338 ~ 56422619 (-)
G417527 NA other downstream 261470 55608835 ~ 55609730 (-)
G416110 NA other downstream 1484972 54363286 ~ 54392411 (-)
G415464 nexn other downstream 1865527 54002448 ~ 54005673 (-)
G415420 NA other downstream 1978294 53890760 ~ 53892906 (-)
LOC110522975 LOC106613586 other upstream 833406 56703896 ~ 56711499 (-)
G418830 NA other upstream 958634 56834026 ~ 56834595 (-)
G419603 NA other upstream 1735667 57611059 ~ 57611567 (-)
LOC110524128 LOC107602773 other upstream 1744662 57612040 ~ 57627128 (-)
G419714 NA other upstream 1824353 57699745 ~ 57705936 (-)

Expression


Co-expression Network