LOC110524086 (LOC106613573)


Basic Information

Item Value
gene id LOC110524086
gene name LOC106613573
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56105602 ~ 56136576 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603408.2
CACCAGCCTAACCGCCACCACCTACCCAACCCAAACCGAGGATGAAAGAAATACCAAATATTGTATAGCGAGCAGATCATTGGATGGGCGTTCATAAAGACCAATAGTGCAGCCTGCATCAGCCGCGAGACGAAATCTATATTTTGCCAAATTGTAAGACAGCAGCTACATAAACATATTGACGGATCATGATTTAATTAGTACCATAAAGCTTTCTACCTCGGACCATGGAATATTCTTTATCACGAACCTCAGACGCTACTGGTATCATGGACAATTGAGGTGGTTCGTTGCATGATATAGTGATGTTTTAATTAGTGAGCTGTCGTGGGTGGGATTGTGCTGCAGAAGATCAAAGCATAGGCTACTAGGTTTATGGATTCGGGCACTCACACAGGGAGGCCTGATGGAAGCTGCGACACATTTGGATATGGCACAGTAAACTTCGAGTAAAGGATAGCTATGAATGCGCGAATGAAATTGTGTCGATATATTGCAATACTAGAATAATAATGGCTGTTTTTTTGTAATGTGGTATATAGCATAGTGACTAAGGGTGAGATGTAAAGCGAAGCCTGCAGGATTTTGATATCGGAGCTAACTATATATTTCGCTGCTTTACTGGAAACGTAAACATCCGGATTATCTTTGATCTTTGACTTAATATAACGGTGAGAGTAGTTAACCAACTACAACTCAACAACACAGGACTAATgtcttctcttccttctatttAAACGGAGAATTACGTTTTAATCTTAAAAAGAGGGCAAGTAGTGTGAGTTTGGGCTTTGCGCTCCTCAGGAATCCTGTGTGTTGTGTGATTGGCCAACATCAACATGCCAACCTCACGCTCCGGTGCCACCCCGGTGGAATACTGGGTCGATGGCTCGCGCCGAGATGTCTCCATGGATGAGTTTTACACCATGGGTCCAGAACTGGGAAGGGGGGCCACGTCAGTGGTGTTTCGCACGGAGGAGAAGAAGACACAGAAGCCCTATGCTGCAAAGGTCCTCAAGAAGACTATCGACAAGAAAATAGTGCGGACTGAAATTGGTGTCCTGCTGCGACTTTCCCACCCGAATATTATCCGCCTGAAGGAGATctttgagacagagacagacatcgCCCTCATCTTGGAGCTGGTGACTGGAGGGGAACTATTTGACAGGATCGTGGAGAGAGGCTACTACAGTGAGAGAGATGCTGCCCATGTCATCAAGCAGATTCTGGAGGCAGTGGCGTATTTGCATGAGAATGGGGTGGTGCATCGTGACCTGAAACCGGAAAACCTTCTCTACGCTGACCTCTCCTTGGACGCCCGGCTTAAGATAGCTGACTTTGGCCTCTCGAAGATAATAGATGAACAAGTGACCATGAAGACGGTGTGTGGCACACCTGGATACTGCGCTCCAGAGATCCTCCGAGGCAATGCCTATGGTCCTGAAGTGGACATGTGGTCAGTGGGAGTCATCCTGTACATCTTGCTGTGTGGGTTTGAACCCTTCTTCGATCCGAGGGGAGACCAGTATATGTACAGCCGGATCCTCAACTGCGACTATGAGTTTGTCTCCCCCTGGTGGGATGAGGTCTCCCTCAACGCTAAGGACTTGGTCAGTAAGCTGATAGTGCAGGACCATCACAAGAGGCTGACGGTGAAGGAGGCCCTGGAGCACCCCTGGGTACTGGGCAAGGCTGCCCGCTTCTCCCACATGGACACCACTCAAAGGAAGCTACAGGAGTTCAACGCCCGGCGCAAACTCAAGGCTATCATGAAGGCCGTGGTGGCCACCAGCCGCATGCACGAGGGCTCCCGGCGGCGCACGGACAGCTGCGATATTCCCGGATCCGACAAGACCACCTCCAGGCAGGGCAGCATGCAGCAGGACCCTCCCCCGGATCAGGACCCCCAGGAGGGTCAGGCCAACCAGGGCACAGACACCACCCTGACCCAGGATGAGGAGGACCAGTGCCCTCCGCCCCTGCCGCCACGCAATCCCAGGCCCATCCCTCCTCTACTGTCTGGGGCTTCCTCCCCCACCTGTCTGCCCACCAGGCCCCCACTAAGGGGAattgatggacagagacagatgtcgGTCATTCCCAAGACGGCGGTGGTACGGCCCAGGGTGCCCAAGAAGAGCTGCTCCTCGATGGATTCCGCCTCCACCAAGCGGGAGACCTCCTCCTCAGTCCAGACCAGTCCCCCAAGCCCCAAGAGCCTTGGCAATGGATTCACCATGGGGGTGGAGTCTGGCAGTAAAACGACCCAGTGTTAGTGAGTGGCAGGTACCAAAGAGAAAGAGGGTGGCGACACTCACCTAGGAGCTCCGACCGTTGTTCTAAGATGGCTGATGGCCGTTGTTGCTGTAGTGTGAGATGGTAGATGACAACACGGAGGAGGAAGGATGGCGGAACGGATGTCTTTGTTCAGATCTCGCCTCATATCCGTTTTGATCCGGGACAAAAGACTAGTGCTATACATAACttgatatttatttttttcccttgCTGTGCGCAACGAGTTTGGAGACTTGGATGTGCAAATGAGCTTTTGACTTTGGTTTCAACTGTTGCCGACTTGCTGTAAACTTCTCTACTTTAAGGCCTCTACTTTAAGGCCTCTCTGAACGGGGAATGCCACTTGAAAAGACAACTTGATTTCATACTTTGTATACTCTACACCTTTCTACTATTCAATGTTGGAATCTACTGACTTCATATGCAAATacgtggatatatatatatatatatatatactgtacataaccCTCTCCTTCTTGCATAGCATTCAGGTAGTAAAGATATTGTATTTGTGAGCTTCTGAATATATTTACGGTGTATTTTGAATTAATTGTAATGATCCAATGTTTGCACTGTATATTATCAGATTAATCTATATAGATCGCAAAAAAACATTCACTCTGCTAGTCGTTTACTATCTAAGTCAAATTGCACTTTTATTCCTTTGGAAATATATATATGGCTGAACAGTGGAGCTTAATTTGAGGCTGAAACCAATTTTCTCATTCAGTTGTTTACCCAAAAAGGGTTGTAAAACCTCATTCTGTGGTAGTTATCTGATGAAGGAACATACATGGTAATCATCTCAACAACCTCACTGGAGCTAccagtctctctacctcctttTTTGTACAGGGGCTTCCAACCCAGTAGAAGCAACATCTGTAAAGAAATGATTAGATGAGTTGAGGTACTGTATCAGGCGAAGCAGTCTCTTTCTGCAACATTAGAATGATATTGTCAGTGCCAGGTAAAAACCTGCGAGGTGAATGTTTTCTCGATGGAACTCAAATAACTGAGCAAATGGAAGTGTGTCATTAAAATAGTCAATTTCTAATTTAAGGGCCAACCTTCACCTGCTAACATGTATTCTCACTCGCTTTCATTGCCAAATTGGATTATGTTGCTGACATGATAACACATGTATAAACCATACATTTACACCTATGAAATGTATAAAGTATGTATATTTTACTGATAATTATTATTGCTTACAAATGCTTTATTTGGGGATTGGTGGGGATGTAGTTAAcagttgtgtttgttttgtagtTTCTCAGTTTCCCATTTTTCATTTCTAAAAATAAATGTACCCTACCTTTTTAATATTTTTGGGGAAGATGACATATTTAAGAAAACATGAGATGATTTAACATCAGTCAGAGGGGGAGTGTAGTGGAGGTGTACACCTTTTGTATGTTTCATCATATCAAAATAATCTAAATGAATTGGATTTGATTATTGTATTCTACAGAAATATATTTTAAAGATGGTAGTTGCTGTGTGCTGATATAAAAGGAATAAAACGTTGATTTTCAAGTCCAATATTGCCTTGGGAGGTTTTATAACAAGCTGCTGATATGAGAATCTCCTCCACacgtttgatttgattaaagAGGCCGTTGGCTCATAGATAATTGGACTTAGTGTATATCATTCATgtttgagtgtacaaaacattaagaataccttcctaatattgagttgcagcccATTCTTCATAcagacgggaaactgttgagcatgaataacccagcagcgttgcagttcttgacacaaatcctactgtactaccataccccattcaaaggcatcTTCTATATGGCCCATTCACCCttcgaatggcacacatacacaatccatgtctcaactgtctcaaggcttaacccgtctcctcccattcatctacactgattgaagtggatt

Function

NR:

description
calcium/calmodulin-dependent protein kinase type IV-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K13412 CPK; calcium-dependent protein kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603408.2 True 4230 mRNA 0.45 11 56105602 56136576

Neighbor

gene id symbol gene type direction distance location
nphs2 LOC106613567 coding downstream 230210 55871200 ~ 55875392 (-)
LOC110524078 nfia coding downstream 379409 55546163 ~ 55726193 (-)
LOC110522973 patj coding downstream 617635 55268446 ~ 55489840 (-)
LOC118964623 NA coding downstream 855639 55248133 ~ 55250837 (-)
LOC110524072 LOC106613556 coding downstream 869030 55182614 ~ 55236572 (-)
LOC118964529 NA coding upstream 75162 56211738 ~ 56214599 (-)
LOC110524088 LOC106613575 coding upstream 104155 56240731 ~ 56383335 (-)
LOC110524089 LOC106613577 coding upstream 319539 56456115 ~ 56459513 (-)
LOC110524090 LOC106613576 coding upstream 324203 56460779 ~ 56485866 (-)
LOC118964625 NA coding upstream 365263 56501839 ~ 56505438 (-)
G417755 NA non-coding downstream 98491 55999872 ~ 56007111 (-)
G417650 NA non-coding downstream 183945 55836424 ~ 55921657 (-)
G417609 rab3b non-coding downstream 257545 55793584 ~ 55848057 (-)
G417615 LOC106613563 non-coding downstream 318388 55786961 ~ 55787214 (-)
G417612 LOC106613563 non-coding downstream 323372 55781788 ~ 55782230 (-)
G418505 NA non-coding upstream 82169 56218745 ~ 56218980 (-)
G418584 NA non-coding upstream 274497 56411073 ~ 56411429 (-)
G418590 NA non-coding upstream 285762 56422338 ~ 56422619 (-)
G418599 NA non-coding upstream 299415 56435991 ~ 56436467 (-)
G418617 NA non-coding upstream 354172 56490748 ~ 56543373 (-)
G417527 NA other downstream 495872 55608835 ~ 55609730 (-)
LOC110524071 LOC106613554 other downstream 945335 55123617 ~ 55181458 (-)
G416110 NA other downstream 1719374 54363286 ~ 54392411 (-)
G415464 nexn other downstream 2099929 54002448 ~ 54005673 (-)
G415420 NA other downstream 2212696 53890760 ~ 53892906 (-)
LOC110522975 LOC106613586 other upstream 572222 56703896 ~ 56711499 (-)
G418830 NA other upstream 697450 56834026 ~ 56834595 (-)
G419603 NA other upstream 1474483 57611059 ~ 57611567 (-)
LOC110524128 LOC107602773 other upstream 1483478 57612040 ~ 57627128 (-)
G419714 NA other upstream 1563169 57699745 ~ 57705936 (-)

Expression


Co-expression Network