LOC110524088 (LOC106613575)


Basic Information

Item Value
gene id LOC110524088
gene name LOC106613575
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56240731 ~ 56383335 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603412.2
AGAGAGCGCGGCTTTGCCAGAGGGAGCGAACCATGTgctgaaggaggaagagagagagcaccaCCGTGACTCAAAAAAAGGGGGGAAAATCGATCATGTCAGCTCCACTGATCTGTACACCACACGTAGGAACGAGGGAAGAGCGACAAGAGAATTTGGCCTTTTCACAACAGCAACCCCAAACAACGCAGGAATAGCAGCAGCAACTTTGCAACTGATGCGGTGTCTCCGTGTCTGCACTTCATGCTTTGGTAGTGGCGTTGCGAGGATGACGCGATAAGCACGCATCAAGAAAGCAACTTATCCTATTGATAACTTTTGCCAGTGAAGGAAGCGGAGGACAGTAGCCACGGACGACATTAGATAATTGCTTTTGTACCAGCCTCAGATTGTGACTGCCCGATGAGCAGAGCAGGACACATCTTGTGAGCCAATGGTTTTTCACGGGCTTGGATTTCTATCGCGCGGCTGCAACATTGTGATATTTTGAGTTTCTTCTGGAGGAACAAGAAGTGGTTGCTTGACTGAAACATTGTATCTCACAAAACGGACCTGAAACGTTGAGTTGAATGGACATCGTTATGCGCGCACATGTGGAGTAAAAAGCATCTTGATTTGGATGACCCGTAAATTGAAGGACGGTAGCAGAATGGATGGGTGAGAGTTATATTTACGACGACTAAAGTTTTAGAAAGTATGCCATGCCGGAAAGGAATGGATTTAAAGGACAAACGACTGTAGGCCTATACTTGGCGTCAATGAATGTCCAACAATATATGATGAGTGTCGCGCAATGTGTTCAAATAAGGCGTTTATCAATTACAGTCATTGAAGAAAATGGATTTTAATAGTTATTGGAAGAGCTTGCCGTGCAAAAGGAGAGCAACGAGCTGAGTCAAACTGTGAATTAACAGAATTGATGAACCTTCATGGAACATAATCTAATTTAACCCCATAGACACCGCTGCTCTGCTTGGACTTCTCACCAGTGTTCTCACGAATGGGAATGTATACATTGTACATCTTCAACTGAAGACGAACAACTGCAGCTGGGAGCACCTGGAATTTGAATGTGGACTGGAAACAAACCTCGTGCAAGTTGAAGAGCACCATGTCCATTTAAACAGCAACCAGAAACACATGATTGTACTTGTATCAGTATAAGTTACAGACAACAACGCGACGAATTATATAGACTCTGCCCATAATGGACAAGAACTATTTAGCTTTTCAAATGGAGTTGACATTTATGGTTGTTGCCCTCTTATCTTGGGTCGCGGTATGGGCTGACGATAGCAAGATTATATCAGACAGATATGCAGTCTACTGGAACAGCACGAACCCAAGGTTTCTCCATGGGGAGTACACCGTGGAGGTGGCCATCAACGACTACCTGGACATCTACTGCCCCCACTACGAGGACCCGCTCCCCCTAGAGCGCATGGAGCGTTACATCCTCTTCATGGTCAACTACGACGGCTACACCACCTGCGACCACCGCATGAAGGGCTTCAAGCGCTGGGAGTGCAACCGGCCACAGAGCCCCAACGGACCGCTCAAGTTCTCTGAGAAGTTCCAGCTCTTCACCCCCTTCTCACTAGGCTTCGAGTTCCGGCCGGGTCACGAGTATTACTATATCTcGTCTCCACACCCTAACCTTGTCGGTAAACCCTGCTTGAAGTTGAAAGTCTATGTCAAGCCCACAAaTGACTCGGTGTATGAGTCCCCGGAGCCCTTCCTGACAGACGACAGCACCGGTGGCTGTTGCATGGCCGCCCCTTGCCTCTCCCTTATGCTAGCAATGCTGCTCACGCTACTCCTTTCCTGCTCATAGCATCCTGGGCCCGCAGGCCGTACCCCCATTAAACAGCCCCCCACCCCCAGCCCCAATCGACTTCCCCTCAAATCTGCCACCTCTGACCCCCTATAAAGGGAGAAAGTGACACGACTCCTCCCCATTTCccgtcctctccttctcccataCCGGTCCACTCTCCTCCACCTCTAGACAGGCACCACCTGGACACCGTAAACTCAtactgcccctccctccctccctccctcccccacccacccAGAACCCTCCTCCCTCCAACTCCTCAGCGGAACCCCTGCTTCATGACCACTGGCCTCTGACCCTCAGCACACAGCTCAAGTCCAGTGGGCGATTAAAGGGAGTATTCCTGGGACCAGGAAGGAGTCCCTTAAAGACCTTACAAAAACAGCCTCCCAGCTACCGAGGAGTGCTGGGATGTGCAGGAAGTGGAGGGGGTGGGTTTGAAATGAACTAAAAGGAGGACGAACTCCTCTCCCACCCTTTCTTGATTGCCGATGGATCGACAGTGACCGTTGTCGTCGACAGCGACGTCTTCTCCACTTAAGGACCCTCTCGTGTTCATCTTCGGACTGTTTGCGTTTCTCTATGAGTCTTTGTGCTTTGATAATGCCCAATAGTGTCCCACCTGTACATGTTCATTCTGTTACAGTGTATTATATCGTAGTATCTTTCTTTAACTCCTGCAGCGATAGATCACAGCTGAaccgtctttctttctctctctatctctcttcttctcttctttcctctcttctcgtGTGTCTCTGACCAGTCTCTAATATCCTGGCAATTTCTAGCAGTAGCAATCCAGAGTAGATAAGGACCTTTTCTGTAAATCTGCCAAAGACACTTGTTGAAATTTTatacgaggggggggggggggggggggcaggggtgtGGGATGGCGGCGCTGTGGCTATCCAACAAGGTCGTAAGCAGCCATAGAGCTCTGTGTAGACCCTCCGAATCATGCCATGGGGGTCCTATCACGGACAGTAGGTTGATGTTTGCCATGAGTCTTGTCCTGgtggcagaactgagcgatttcctcttagataggccagctgcaaagtcaaaattggctatattgtacaAATTCAAACTAAAATGCagtttaaagttagggttaggggttagagttaggtttaaaatctgatttaatgactgtgtggctgtgccagctagtgtccactctgcagagctgcctcaaGAACAAGATTCATGGCGAAAAGCGCTAACCTGCTTACGGACAGGGCagtgtagatttaaaaaaaagaatgttccttaagaaaacaaacaaatgaaCCGTTTTAAAAATGGCCTTTTTTCCACTGGTGCTGATTTCAAAACGAGTCTCCGTCTCAAGCTGCGGTGCTGAGTAGAAGTGGGACATCCTGTAGTGGTGAAGTGTTTTGTGAATTTCAGGTTTTGCTTTTTGTTtccccatccttccctcctctcattctcccacGTTTTCTTCTCTagctcccttctctctgtctctctcatgctCTGAATGTGAGTTTTCACCGCGTGACGTTTTTTGCCGTGTGACACATGCCCATTGCTATGTCAGGTCCCCTTGTCTCAGTCCCACTACTACGGCTGTTGGCCGCTGGGACTTTTCCCGGAGATTGAGATAATGGACAATGTGAACTCCCCATGCACTGTGCAACCTAAGGGACCGGGGCCTCCATGGACAGCAATGGGGAGATGGATGGCCCCCAAAATACTAGGAGTTTGGAATCTCAGTAGCACTTTCGCTCACAAAATGGACTCTTCTGTTTCatgaagaagaaagaaagaaatgagaAGAAAAGACGGGGACCGAAGTGTATGTATGAGGATAATTTTGTGTCTTTGTGATAGAACGCTCCTCATGATCATGACGTTACACAGAGAGCTGGCCTACAACATCCGCAGGAACTCAGAAATAAACAACCATTTTAAAAAAAGTTCGCTAAATACAACTTTTATATTTTACTTTAttccatgttattttttactttactttTCAAAAAAGCAGCAGAAATTATTCATATGTGATATGAAATTATAATGTAGACCCTTGAATTACTAGATCGATGATGGGACAGTCTCTGCAGTCAAACAAGTCTAGAGAAGTCAGCCATTtgctattgttgttgttgttttcctgCTTGTATCACAATGCATTCTGGTACTTGTAGTCCTGTAATCATTATTTTTTAAAGGTGAAGAACATGGTGTGGTTATCAGATCAATTCCTTTTTTAGTTGGTTTAAATGTGGATGAAACCTGTTTTGATTTCATatgaaatgttcttgttttggcATAGGAAAGTTATGGGGGGGAAATGGAAAAAACACAAATAAAGCTTTTTTTTGTCTGTAGCGGAAATAGCTCTGGTTTACAGTGTGACATGTTTATACTGTAGGCTACAGACTGAATACATCATCAGAGTATTCAGAACTGCTGTTTCAATCAAACATGAGCTCTCAGCCACTGTTTCGAGCGTCTTTACCTAAAGTAAATTGCAGTCTAATGTTGATAAGCTGTTTTGTAGTTTAAAAGGATGTCTGCATATATTCTTTGAAAAGATTTCTTGTTTTTTGTACATTTTGTTAATGGTTGCttgtcaaaaaaaaaaacattaaaacagtTCATGCATTTAAGAAATTGAACTTGTTAGAAAGCTGGGGTGGTTTAACATGGTCAAATCTAAGGATCGTCCCTCAAGATTTTCTAAAAGGTAATCAATTTGATGGATTTGCCACTTCTGACAATTCTCTTCCCTGTGATGCATGCCTAGCATAAAACCTATTTTAATCAAAGAACAGACTTTCAGACCTGTGCTGATTGAATTCTAGTGAGTGTTCAGAGGGAAGATCATTTCAGAAATGTATCAATCAGTGTTTGATAATTTCACAACAAATAAAGCTTCCACTAAAAGTGG

Function

NR:

description
ephrin-A2-like

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K05462 EFNA; ephrin-A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603412.2 True 4772 mRNA 0.45 4 56240731 56383335

Neighbor

gene id symbol gene type direction distance location
LOC118964529 NA coding downstream 26132 56211738 ~ 56214599 (-)
LOC110524086 LOC106613573 coding downstream 104155 56105602 ~ 56136576 (-)
nphs2 LOC106613567 coding downstream 365339 55871200 ~ 55875392 (-)
LOC110524078 nfia coding downstream 514538 55546163 ~ 55726193 (-)
LOC110522973 patj coding downstream 752764 55268446 ~ 55489840 (-)
LOC110524089 LOC106613577 coding upstream 72780 56456115 ~ 56459513 (-)
LOC110524090 LOC106613576 coding upstream 77444 56460779 ~ 56485866 (-)
LOC118964625 NA coding upstream 118504 56501839 ~ 56505438 (-)
LOC118964624 NA coding upstream 127132 56510467 ~ 56546694 (-)
LOC110524093 LOC106613579 coding upstream 195300 56578635 ~ 56580493 (-)
G418505 NA non-coding downstream 21751 56218745 ~ 56218980 (-)
G417771 NA non-coding downstream 119122 56041480 ~ 56121609 (-)
G417755 NA non-coding downstream 233620 55999872 ~ 56007111 (-)
G417650 NA non-coding downstream 319074 55836424 ~ 55921657 (-)
G417609 rab3b non-coding downstream 392674 55793584 ~ 55848057 (-)
G418584 NA non-coding upstream 27738 56411073 ~ 56411429 (-)
G418590 NA non-coding upstream 39003 56422338 ~ 56422619 (-)
G418599 NA non-coding upstream 52656 56435991 ~ 56436467 (-)
G418617 NA non-coding upstream 107413 56490748 ~ 56543373 (-)
G418622 LOC106613464 non-coding upstream 119206 56502541 ~ 56546662 (-)
G417527 NA other downstream 631001 55608835 ~ 55609730 (-)
LOC110524071 LOC106613554 other downstream 1080464 55123617 ~ 55181458 (-)
G416110 NA other downstream 1854503 54363286 ~ 54392411 (-)
G415464 nexn other downstream 2235058 54002448 ~ 54005673 (-)
G415420 NA other downstream 2347825 53890760 ~ 53892906 (-)
LOC110522975 LOC106613586 other upstream 325463 56703896 ~ 56711499 (-)
G418830 NA other upstream 450691 56834026 ~ 56834595 (-)
G419603 NA other upstream 1227724 57611059 ~ 57611567 (-)
LOC110524128 LOC107602773 other upstream 1236719 57612040 ~ 57627128 (-)
G419714 NA other upstream 1316410 57699745 ~ 57705936 (-)

Expression


Co-expression Network