LOC110524089 (LOC106613577)


Basic Information

Item Value
gene id LOC110524089
gene name LOC106613577
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56456115 ~ 56459513 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603413.2
CATTGAGTCCGATATCAATGCCCGTGACACTGTACACGTCACTAACAGGAACTTGGCATTTCCTGGTTGTACTTATCGAAACCACTTATGCTTACAACAAAATGCTCATGTGAAGTTGCTGTTTTCTCCATTGAAACGACGACACGGTTTAATTATAGTGTGCTAGTCCGTTTTTACAGTGTAAGGCGACAACGAAAATGCAATTTCAAGGAGTCATGAGGATCCTTTTACCGACGTTGTGGGCTATTTCAACCTTCGCAGACGAAAAAACGAAGTCGCCAACAACAACAGGCATTACTGCTGCTGGCAACACCAAGCATGTCACGAATTCGAGTGCCAGTAACACGACGTCCAAGAACAATCATAGCGGCATTTTCAACTCTTTCGACGTTGATAGTTCAATGATACAACGGGCCTTGTACGTCCTCATTGGAGTCACCACCATTGGCGTGTTCTATTTCCTCGTGAGAGCTGTGCGGCAGAAGAAAAGAACAACCTCTAAGAAGAAGTATGGGCTGTTGTCAAACTATGATGACAGTGTTGAGATGGCTGTGCTGGAGAGTGATGAGGAGGATGACACTGTATACGAGGCCAGGTCCCTGAGAAGATGAGTCTGGATCTTTTCAAATAACACACATTGGACTGGGGAAAGAATGGAGACATTCCTAAGGTGCATTTTTCAACTGTTATTAAGGCATATTTTTCTTTTTGTCCTGCACCTGAAAAAAGGAAAACTGGCTTTCAAAATGACTGCTCTATCCTCCGGTGAACACTTTTTTTGTCTAGCTGCCTGGGTATGAAAAAGACATGGTGTTTTTGGTGACCAAATAAATGTACCTTTTGATTCTAACTATGAAGAGGAGGAAATAGGATTTGTAACATAACAGGAGTCTAATGCCAAAGTTGCTTAAGTGAATGTGTGCGGGGTAATTCTTCAAATCCCCCTGTGCCCAACTTGAACTCTGCATAACAAACAACGAAAGATCTCTTCTAATCATCAACACGGATCCTCAATTTCCCGGTCGATGTGGTGTTGCCAAGGTTTTGTTTCTTTGTCTCCTGACAATATTCTGTTGCCATGGCATCCTATATATTTTCTGATGTCTACCTTGAATCATACCTGGACCATTAGAGTTAGGCTCGTAGCTAATAGCCTGATTAGTGAGTGCGCTTACAAACTACTGTAAACTAAGCTAGCCTACCAATATCCCCATCCCATTTTGTACTATGCACCCACACATGAATGTTGTACTGTTGCATATACCTGCTCTATTTGGTAAGCTAGACCTAATAAGTTTGTAATACTTTCAAGAAGTTAGTTGCTGAAAAAGCTAAACTTAAGCCAAAACTTTTGACAATCTTAGACAGTATGGAATGTGTCTGTAATTATAGCCCCATTTTTATGCAGGCTAATCAATATGCAATTCCACTGGCGATTGAAAAATCCATCCCTTCCCCTCTGTTTTGGCTACTTGTAACTCTGTAGAAGAAGCACCTATAATAatttgttaggcctactcatatCAGTTCAACTGTCATTTCAGGTTTTGGTTACCAGTAATTTCCCAATGCACAACCCATTGTTTTCAAATCCAGCTAACTGTAAATTATCTCATGTGTTCTGAGAACCTTTGCTTCTTTTTATTTTtcaaaaacaacacatttcagagCTGGTTCTTTCTCCTAAATACATGGTTGCTGTTGACTGTAAAATCTCCTGTAATTTGTCCAGAGACAGTTTGCTGTTGCATTTACACAAGCTACTAAATGAACAAAGAAGGGTCCACGCaatctatttattttttatatagctTTTTCCAACCTGCTTTGGTTTTGAATTTATTGTGGTGTCTTAATTTTCCGTACCATACTCAAGTTGCAGAAAGAGGATCCCTGCATAAGTATTTGTCACTACTGTGCTTGCTTCATAGCAATTCCCAGGGGAAAATGAATACAATGTCACACATTGATTTATAAATTGAAACATCTTGGTTAATTGTCCATTTCCGGGAGATAACTGCATTATAGTTTACGTTCCTGATAATCAGAAGAAACACACAGGCAAGAGATGTATCTTAAATGAGCATCAACCCCACTGAAAATCCTCCCAGGTGACCTTCAAACAATGTCAATGTCTGTACTAGAAATAGATTCATATTTTCTAAGAATTTTAATGCCAGCTGGTCCTGAGCTCAAAATAACTGCCGACTCACTCCTTTCCCTCGTCATATGATTTGTTTCCTGAAGGTGGTTTTCTGTCTGCATTCCTTTGTCTGTGCAAATCTTGTATTTAACGGGAGCAAGGTCAGTCATATGATAAAGACCTCGGCGAACAAAGGCTCCAGTAAAACTTATATGCTTTGACTGGCTCTAACAAATATCATGATTGTTTTCATGGTCCATTTCTTGTCTTCGTCTATGAACTGTATGTACGTTCTGATCAGCAATACCGTTCCTTTGTCAATACTGTGGCCTGTGTGATAGAGAAGTCCCGGTCGTGTTTTGAATGAGGCCAaagtgtatgtactgtatctgtgTGTATTGAGTCTTGTATTCTCTGTTGATTTAATGACTAGTAGTGCTGTGTTGGTGCTGCAGGTCTGAGGCCTTCTGGTTGGTTGGTGGTGGGATCCTTCGGCTGTTACGGTGGGCTCTTTTCACATCATGttgaaaaggaaaaataaatcaaAGTGAGACTTTGAGCAAGACTAA

Function

NR:

description
uncharacterized membrane protein C19orf24-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603413.2 True 2712 mRNA 0.40 3 56456115 56459513

Neighbor

gene id symbol gene type direction distance location
LOC110524088 LOC106613575 coding downstream 72780 56240731 ~ 56383335 (-)
LOC118964529 NA coding downstream 241516 56211738 ~ 56214599 (-)
LOC110524086 LOC106613573 coding downstream 319539 56105602 ~ 56136576 (-)
nphs2 LOC106613567 coding downstream 580723 55871200 ~ 55875392 (-)
LOC110524078 nfia coding downstream 729922 55546163 ~ 55726193 (-)
LOC110524090 LOC106613576 coding upstream 1266 56460779 ~ 56485866 (-)
LOC118964625 NA coding upstream 42326 56501839 ~ 56505438 (-)
LOC118964624 NA coding upstream 50954 56510467 ~ 56546694 (-)
LOC110524093 LOC106613579 coding upstream 119122 56578635 ~ 56580493 (-)
si:dkey-121a11.3 LOC106613582 coding upstream 143370 56602883 ~ 56630974 (-)
G418599 NA non-coding downstream 19648 56435991 ~ 56436467 (-)
G418590 NA non-coding downstream 33496 56422338 ~ 56422619 (-)
G418584 NA non-coding downstream 44686 56411073 ~ 56411429 (-)
G418505 NA non-coding downstream 237135 56218745 ~ 56218980 (-)
G417771 NA non-coding downstream 334506 56041480 ~ 56121609 (-)
G418617 NA non-coding upstream 31235 56490748 ~ 56543373 (-)
G418622 LOC106613464 non-coding upstream 43028 56502541 ~ 56546662 (-)
G418679 LOC106613581 non-coding upstream 127669 56587182 ~ 56587655 (-)
G418671 NA non-coding upstream 129517 56589030 ~ 56593265 (-)
G418680 NA non-coding upstream 134435 56593948 ~ 56594224 (-)
G417527 NA other downstream 846385 55608835 ~ 55609730 (-)
LOC110524071 LOC106613554 other downstream 1295848 55123617 ~ 55181458 (-)
G416110 NA other downstream 2069887 54363286 ~ 54392411 (-)
G415464 nexn other downstream 2450442 54002448 ~ 54005673 (-)
G415420 NA other downstream 2563209 53890760 ~ 53892906 (-)
LOC110522975 LOC106613586 other upstream 249285 56703896 ~ 56711499 (-)
G418830 NA other upstream 374513 56834026 ~ 56834595 (-)
G419603 NA other upstream 1151546 57611059 ~ 57611567 (-)
LOC110524128 LOC107602773 other upstream 1160541 57612040 ~ 57627128 (-)
G419714 NA other upstream 1240232 57699745 ~ 57705936 (-)

Expression


Co-expression Network