serpinc1 (LOC106613587)


Basic Information

Item Value
gene id serpinc1
gene name LOC106613587
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56696618 ~ 56702156 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603437.2
GTTTGAGCTGAGTAAATCTTCCTTTCTCCAGCCCCCCACTTGCGCTACAGGACACTGACCCCTATGAGGGACTCATGAGTTCAACTCGCAGCCGATACTTAGgttccacacacacagtcatttacAAGGAAAATATACCTCAGctGCTGAATAAAACGACTAACTACTTTAAAGAAAAAAAGGTGCTTCTAATAAGgaTGAGGTTGTCCGAGTTTGTGTGGATTCTGGGACTGCTCCTCGCCTTGCTATCAACCTCCCAGGCGTTCAAAGACTTCTGCCATGTCAAGCCCAAAGACGTGCCCCTGGAGCCCAAGTGTGTCTACCGCAGCCCCGAGGATGAAGCCTTGACAGCGGATGCTAAACCAGAGAAAGTCCCTGAGAACACCAATCCCCGGGTGTGGGAGCTGTCCAAGGCGAACAGTCGCTTCGCCTTGTCCCTGTTCAAGCAGCTATCCCAGGGTAAACCCAGCGAGGCCAACATCTTCATGTCCCCTATCAGCATATCCACAGCCTTCGCCATGACCAAACTAGGCGCCTGCAACAACACGCTCAAACAGATTATGAACGTGTTTGAGTTTGACACGATCAAAGAGAAGACGTCGGACCAAGTGCATTTCTTCTTCGCCAAGCTAAACTGTCGCCTGTACCGCAAGAAAGACAAGACGACAGAGCTGATCTCAGCCAACCGTCTTTTCGGAGAAAAGTCTCTGGCATTCAGTGAGAATTACCAGAATATCAGTGAGCTGGTGTATGGCGCCAAACTCATGCCACTCAATTTCAAGGAAAAGCCAGAGCTGTCCCGGGTGACCATCAACGATTGGATCTCAAACAAGACGGAAAAAAGGATTCAGAACACTTTGCCGGAGGGATCACTGAACTCCAACACTGTGCTGGTCCTGGTCAACACCATCTATTTCAAGGGTCAGTGGAAAAGCCAATTCGACAAAGACAAAGTCTTCAAGGCCGACTTCTACGTGAGTAAGTCCAAGACATGCCCAGTGTCCATGATGTACCAGGAGACCAAGTTTCGCTACGGCAGGTTCACTGAAGATAAGGTGCAGCTGCTGGAGCTGCCGTACCGTGGAGAGGGCATCACCATGGTGCTGATCCTACCACTGAAAGGAACACCCTTGTCTGAGGTGGAGGAGAACCTGGACTTGAAgaagctgactggctggctggataACATGAGGGAGACCGCGGTGTCGGTGCATCTGCCACGCTTCCGCATCGAAGACAGCTTCAGTCTGAAGGAGCAACTTCAGGCCATGGGGCTCGAGGACCTCTTCAGCCCCAGGGACGCCAGCCTCTCAGGCATCCTGGAAGACGAGGCAAATAATCTGTACATTTCAGATGCATTCCATAAAGCATTCATAGAGGTGAATGAGGAAGGCAGTGAGGTGGTTGCTGCCACAGCTGTGGTGGCCATCGGCCGCTCCATCAACTTAAACCAGGAGGTGTTTATGGCCAACCGGCCCTTCCTCCTGCTCATCCGAGAGTCCACCATCAACACCATGGTGTTCACCGGCCGGGTGGCTGACCCCTGTGAcccctgatcacacacacaccaacctcgGATTTGTCATTCATGTCATGTAACAGCCCATTTCTGATCTCTGTATCAATGTAAAATAAACCAAATCGGATGGACAGTGGA
>XM_021603438.2
TCCTTTCTCCAGCCCCCCACTTGCGCTACAGGACACTGACCCCTATGAGGGACTCATGAGTTCAACTCGCAGCCGATACTTAGgttccacacacacagtcatttacAAGGAAAATATACCTCAGgaTGAGGTTGTCCGAGTTTGTGTGGATTCTGGGACTGCTCCTCGCCTTGCTATCAACCTCCCAGGCGTTCAAAGACTTCTGCCATGTCAAGCCCAAAGACGTGCCCCTGGAGCCCAAGTGTGTCTACCGCAGCCCCGAGGATGAAGCCTTGACAGCGGATGCTAAACCAGAGAAAGTCCCTGAGAACACCAATCCCCGGGTGTGGGAGCTGTCCAAGGCGAACAGTCGCTTCGCCTTGTCCCTGTTCAAGCAGCTATCCCAGGGTAAACCCAGCGAGGCCAACATCTTCATGTCCCCTATCAGCATATCCACAGCCTTCGCCATGACCAAACTAGGCGCCTGCAACAACACGCTCAAACAGATTATGAACGTGTTTGAGTTTGACACGATCAAAGAGAAGACGTCGGACCAAGTGCATTTCTTCTTCGCCAAGCTAAACTGTCGCCTGTACCGCAAGAAAGACAAGACGACAGAGCTGATCTCAGCCAACCGTCTTTTCGGAGAAAAGTCTCTGGCATTCAGTGAGAATTACCAGAATATCAGTGAGCTGGTGTATGGCGCCAAACTCATGCCACTCAATTTCAAGGAAAAGCCAGAGCTGTCCCGGGTGACCATCAACGATTGGATCTCAAACAAGACGGAAAAAAGGATTCAGAACACTTTGCCGGAGGGATCACTGAACTCCAACACTGTGCTGGTCCTGGTCAACACCATCTATTTCAAGGGTCAGTGGAAAAGCCAATTCGACAAAGACAAAGTCTTCAAGGCCGACTTCTACGTGAGTAAGTCCAAGACATGCCCAGTGTCCATGATGTACCAGGAGACCAAGTTTCGCTACGGCAGGTTCACTGAAGATAAGGTGCAGCTGCTGGAGCTGCCGTACCGTGGAGAGGGCATCACCATGGTGCTGATCCTACCACTGAAAGGAACACCCTTGTCTGAGGTGGAGGAGAACCTGGACTTGAAgaagctgactggctggctggataACATGAGGGAGACCGCGGTGTCGGTGCATCTGCCACGCTTCCGCATCGAAGACAGCTTCAGTCTGAAGGAGCAACTTCAGGCCATGGGGCTCGAGGACCTCTTCAGCCCCAGGGACGCCAGCCTCTCAGGCATCCTGGAAGACGAGGCAAATAATCTGTACATTTCAGATGCATTCCATAAAGCATTCATAGAGGTGAATGAGGAAGGCAGTGAGGTGGTTGCTGCCACAGCTGTGGTGGCCATCGGCCGCTCCATCAACTTAAACCAGGAGGTGTTTATGGCCAACCGGCCCTTCCTCCTGCTCATCCGAGAGTCCACCATCAACACCATGGTGTTCACCGGCCGGGTGGCTGACCCCTGTGAcccctgatcacacacacaccaacctcgGATTTGTCATTCATGTCATGTAACAGCCCATTTCTGATCTCTGTATCAATGTAAAATAAACCAAATCGGATGGACAGTGGA

Function

NR:

description
antithrombin-III-like isoform X1

GO:

id name namespace
GO:0010951 negative regulation of endopeptidase activity biological_process
GO:2000266 regulation of blood coagulation, intrinsic pathway biological_process
GO:0005615 extracellular space cellular_component
GO:0008201 heparin binding molecular_function
GO:0004867 serine-type endopeptidase inhibitor activity molecular_function

KEGG:

id description
K03911 SERPINC1, AT3; antithrombin III

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603437.2 False 1657 mRNA 0.51 8 56696618 56702156
XM_021603438.2 True 1585 mRNA 0.52 7 56696637 56702156

Neighbor

gene id symbol gene type direction distance location
rc3h1a LOC106613585 coding upstream 8029 56658921 ~ 56688589 (+)
stil stil coding upstream 49528 56631796 ~ 56647090 (+)
LOC110524094 LOC106613581 coding upstream 103337 56585208 ~ 56593281 (+)
LOC110524091 LOC106613578 coding upstream 171030 56505544 ~ 56525588 (+)
LOC110524085 LOC106613570 coding upstream 591337 55932977 ~ 56105281 (+)
dph5 LOC106613590 coding downstream 77702 56779858 ~ 56788653 (+)
LOC100135807 LOC106613594 coding downstream 241687 56943838 ~ 56958165 (+)
LOC118964777 NA coding downstream 253168 56955324 ~ 56955462 (+)
LOC110524109 LOC106613599 coding downstream 313772 57015928 ~ 57037694 (+)
LOC118964761 NA coding downstream 324169 57026325 ~ 57026460 (+)
G418087 NA non-coding upstream 29012 56633853 ~ 56667606 (+)
G418076 kiaa1614 non-coding upstream 79764 56614206 ~ 56616854 (+)
G418063 NA non-coding upstream 102252 56593978 ~ 56594366 (+)
G418007 LOC106613576 non-coding upstream 218052 56477763 ~ 56478566 (+)
G417989 NA non-coding upstream 223483 56471045 ~ 56473135 (+)
G418176 NA non-coding downstream 123983 56826139 ~ 56826512 (+)
G418178 NA non-coding downstream 125515 56827671 ~ 56827880 (+)
G418181 NA non-coding downstream 127566 56829722 ~ 56829961 (+)
G418183 NA non-coding downstream 131220 56833376 ~ 56833580 (+)
G418184 NA non-coding downstream 131481 56833637 ~ 56833862 (+)
G418077 LOC106613582 other upstream 68001 56617890 ~ 56628617 (+)
G416857 NA other upstream 1371347 55324645 ~ 55325271 (+)
G415946 NA other upstream 2083476 54590074 ~ 54613142 (+)
mutyh mutyh other upstream 2346003 54346481 ~ 54395448 (+)
G415809 NA other upstream 2366138 54330080 ~ 54330480 (+)
G418119 LOC106613588 other downstream 24029 56726185 ~ 56729821 (+)
G418251 rtca other downstream 221768 56923924 ~ 56925176 (+)
LOC110524119 LOC106613607 other downstream 663208 57352343 ~ 57367627 (+)
G419452 NA other downstream 1182224 57884380 ~ 57899648 (+)

Expression


Co-expression Network