LOC110524100 (LOC106613588)


Basic Information

Item Value
gene id LOC110524100
gene name LOC106613588
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56726174 ~ 56729842 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603441.2
CTTTTACTCAGCCTCTCTTGCGCACGGTGCTCATTCCATGAAATCACGCAGCAAACACACAGAACTCAGCCGCTGGAAAATATAAAAAAGTTTCTGATTCGAGGATTTGTGCGAATATAGGTTGATACTTGGAATATTCTCATTGATGACCACTATTAGGGGAGTTTCATGATGGAGTCCAAGATCATACTCAGAACATCCTGTGGCAATAAGGATTGTTTGATTGCATGTCTGCAATGACAACCTATCAAGTGCTAAGGAATACCATTGCCAGCTGTGCCTTGGCCTGCCATCGCCCCTCAGTGGACTAAGTGGTGGACTACAGAATTTATAGGATTTAAATTCAAATCAGAGCCATGGGTGACTCAATGTATTCCGACTTAATAGCCAGACACTACAACTTCACAGGGAAGCTCCGGAAAGTGGAGCAGGATTCCAGACTCAAAGCGGACTCTGTGGTTTTCATCATTGTATGTTGCTTCATTATCCTTGAGAATGTCTTGGTCCTGCTTACCATTTGGAGGACCAAGAAGTTCCACAAGCCCATGTACTACTTTATTGGGAACTTAGCCCTATCAGACTTGCTGGCGGGTGTGGTGTACACTGCCAACATCCTGCTGTCAGGTGCCAACACATACAAACTGACCCCCACACAGTGGTTCTTCCGGGAGGGGAGTATGTTTGTGGCCCTGGCAGCCTCAGTCTTCAGCCTGCTGGCCATCGCCATTGAGCGCCACCTCACCATGCTGAAGATGAAGTTGCACAACAATGGCAACACGTGCCGTGTCTTCATGCTCATCAGCACCGTGTGGCTGATTGCAGCCATCTTGGGCGGCCTGCCCATCATGGGCTGGAACTGCATCCAGAGCATGCCCAGCTGCTCCACCGTACTGCCGCTCTACCACAAGACCTACATCCTGTTCTGCACCACCGTCTTCAGTGTCATCCTCATGGCCATCGTGGTCCTGTACGCGCGCATCTACGCCCTGGTGCGCACCCGCAGCCGCAAGCTGGTGTTCCGCAAGGTCTCCAACGGCCGCGGCGGGGGTAGCGCTAGCAGTAAGAGCTCGGAGAAGTCCATGGCCCTGCTGAAGACCGTGATCATCGTGCTGAGCTGTTTCATTGCCTGCTGGGCTCCACTCTTCATCCTCCTGTTGCTGGACGTGGCCTGCGACATCCGCATGTGTGCCATCCTGTACAAAGCCGAGTGGTTCCTGGCCCTGGCCGTGCTCAACTCGGCAATGAACCCCCTCATCTACACGCTCACCAGCAACGAGATGCGCCGCGCCTTCCTAAAAACGCTCATGTGCTGCAGTGTCTGCACCCGGCCCTCTGGCAAGTTCTCTCGGCCCATCATGGGTGCAGAGTTCAGCCGAAGCAAGTCGGACAACTCGTCCCACCCCAATAAGGACGAGCCAGAGTACTCGCCAAGGGAGACCGTCGTGTCCTCTGGGAATATCACCTCCTCTTCTTAAAGGGCCTTGTGGACTGTTGTGAGAGAATTAGCTCCACTGCTTAGGGAACGtggatgtgtgtatatatgtttttgcgcagtgtgcaagtgtgtgtgtgtacattatgtatatatgtgtataagtagagtgtgagtgtttgtatgtggTTTTGTTGCACCGTGGTtgtgtctatgtacagtgtgtaagtAGCCTCTTTAGTTTCCATTTGTTTGATCATTTCTCGAAGGGTCTGTCTTTGATGCATGAGAAGAAACTCATCAGAATAAAAGGCTAAACTGGAAGAAAGTGAATATCTCTGGCCATCCAGTAGCCCATGCTAGAGAGTAGAACTGAAAGAGTGTTACAGtttgtgtccccccccccacacacacacacacgttgaggACGGCCAGCACTGAACTTAATTTTTTCATATTCAAAAGACAATGTCATGGGGAAGCACTTACAGTACAGCACCCAACGTGCAAACCTGACTTCTCAGTATTGAGTTCAACCATGTTCTTTTTACAGATTGAGAAGAAGCCCTTTTAGTCAAAGGTATTTTTTATGTATTGAGTACAGCACTTGTTGTAAAAAGGCTCATTAAAAACCATCAACCAATTATAGGTGTTTACTGATTCTCTAAGGTGTTGATGGAAGTGTGACAATAGTTAGCAGTGTTAATTGTTCTCATTGAAACGTTTAAGAAATACAATTAATGAAGCGCTCGTGTTTCTTCGACTTAACTCTGAAGGCTAGTACAATGTAAATTCTACCCCTTGATTAAGAATGTGTTTTGTActtgtaatttgttttatttcactctTATTCGATACAAGTTATCTTTGTAGCGATGCAATGTAGTTGCAATAATAATTTATATTCTGGTTGATGTGTGACAAAGGTCGTCTTTCTTTTCCCAGTTGTGATTTCTTTTTACCTGCCTTAATAAAGGAGGATTCCTTTTAGATTTTGTAGATGCTGTGGCTCCAGCCATTCAACATTTTGCATATTTGCCTGTTCCTCGGTTTCCACTCTCTTGTGAAAACCAGCATGCCCCAATATTAGGGAAGGACACGAGGTCggaaaaaaaaacacaagagATTGACATAAACTCAATAGCTGTCGTCCATTGTTGAAAGCACCGACCCCAATAATGACTTAGATTTTTCATAAAGGAAGAAGTGAACATAGACCTTACTGTGGGCGCACACATCATCAATAGCTCACTGGAATGGTTCGGTGAAACCGCCTATGGTTTGTTCAGTTAGTAAATATGTGTTATTTAGAACCGTTAAACACCCACGGACAAGTACAATAGCACTTGTCAGTTGTCAATTAATCCGTTTGCCAAACTTCCATGTGACCCCAAGTCATATTTTGCACGTGTTTTTGTTGCAATGTTTTGGTTAGCTCTTAATAAATATTGGAAATAAAAAAGGT

Function

NR:

description
sphingosine 1-phosphate receptor 1

GO:

id name namespace
GO:0003376 sphingosine-1-phosphate receptor signaling pathway biological_process
GO:0030335 positive regulation of cell migration biological_process
GO:0001944 vasculature development biological_process
GO:0008078 mesodermal cell migration biological_process
GO:0031226 intrinsic component of plasma membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038036 sphingosine-1-phosphate receptor activity molecular_function

KEGG:

id description
K04288 S1PR1, EDG1, CD363; sphingosine 1-phosphate receptor 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603441.2 True 2897 mRNA 0.46 2 56726174 56729842
Loading

Neighbor

gene id symbol gene type direction distance location
LOC110522975 LOC106613586 coding downstream 14675 56703896 ~ 56711499 (-)
si:dkey-121a11.3 LOC106613582 coding downstream 97267 56602883 ~ 56630974 (-)
LOC110524093 LOC106613579 coding downstream 145681 56578635 ~ 56580493 (-)
LOC118964624 NA coding downstream 179480 56510467 ~ 56546694 (-)
LOC118964625 NA coding downstream 220736 56501839 ~ 56505438 (-)
LOC110524101 LOC106613589 coding upstream 59791 56789633 ~ 56817065 (-)
LOC100136253 LOC100526765 coding upstream 108665 56838507 ~ 56842447 (-)
gpr88 LOC106613990 coding upstream 130773 56860615 ~ 56862316 (-)
cdc14ab LOC106613592 coding upstream 134608 56864450 ~ 56913656 (-)
LOC110524106 LOC100195223 coding upstream 194074 56923916 ~ 56929200 (-)
G418689 LOC106613587 non-coding downstream 24012 56698200 ~ 56702162 (-)
G418749 NA non-coding downstream 37602 56687084 ~ 56688572 (-)
G418687 NA non-coding downstream 123377 56601988 ~ 56602797 (-)
G418686 NA non-coding downstream 125183 56599690 ~ 56600991 (-)
G418835 NA non-coding upstream 127783 56857625 ~ 56858157 (-)
G418836 NA non-coding upstream 128416 56858258 ~ 56858492 (-)
G418839 NA non-coding upstream 128707 56858549 ~ 56858751 (-)
G418867 NA non-coding upstream 185603 56915445 ~ 56915660 (-)
G418872 LOC100194703 non-coding upstream 202460 56932302 ~ 56932694 (-)
G417527 NA other downstream 1116444 55608835 ~ 55609730 (-)
LOC110524071 LOC106613554 other downstream 1565907 55123617 ~ 55181458 (-)
G416110 NA other downstream 2339946 54363286 ~ 54392411 (-)
G415464 nexn other downstream 2720501 54002448 ~ 54005673 (-)
G418830 NA other upstream 104184 56834026 ~ 56834595 (-)
G419603 NA other upstream 881217 57611059 ~ 57611567 (-)
LOC110524128 LOC107602773 other upstream 890212 57612040 ~ 57627128 (-)
G419714 NA other upstream 969903 57699745 ~ 57705936 (-)
G420193 NA other upstream 1382545 58112387 ~ 58114060 (-)

Expression

LOC110524100(LOC106613588) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
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LOC110524100(LOC106613588) Expression in each Bioproject

Bar chart with 18 bars.
LOC110524100(LOC106613588) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1000.
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Co-expression Network