LOC110524101 (LOC106613589)


Basic Information

Item Value
gene id LOC110524101
gene name LOC106613589
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56789633 ~ 56817065 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977918.1
ATCAATCCTATCTGATAAAACATCACGCaatttgtttttctttctctgtctgaatCTGTCCTTTGCTTTTGTTGAATTATCGTACGGCATATGGAGTAACAGGTTTGATATCAGATTCCTTTCACATGTTCTTTGACTGCACTGCACTTTTAGCCGGACTTGCAGCCTCTGTGATTTCCAGGTGGAGGTCGAATGACTCATTCTCATATGGATATGTGAGGGCGGAGGTGTTGGCAGGGTTTGTGAATGGCCTGTTCCTCATCTTCACCGCCTTCTTCATTTTCTCAGAAGGCGTAGAGAGGTTTTTGGAGCCGCCACACGTGAATCACGATCGTCTGCTCCCCGTGTCTGTCGCTGGGCTGCTGGTGAACCTGGTGGGCATCTTTGTGTTCCAGCACGGGGGCCACGGCCACTCTCACGGAGGGGATGAAGGTCACAGCCACAGCCACTCTCTGTTCAATGGCAATGCAGGTCACGGACACAGCCATGGGGGTCATGGGCACGAGTCCAAACATGGAGATGGGCACGAGCACAGCCATGGAGATGGACACGGGCACAGCCACGGAGGGCACAGCCACGGACATGGGCACAGCCACTCCCACAAGGAGCCCCACTGCCATGaTGAACTGCACACGCCAGGGAAGGGCTCCAGCAAACAGATTTTGCAAGGGGTGTTTTTACATATCGTAGCTGACACTCTGGGCAGTGTGGGAGTGATCATCTCAGCGCTCCTGATGCAGAAGTATGACCTGATGATCGCTGACCCCATCTGCTCCATGTGCATCTCCATTCTGATCGGAGTCAGTGTAGTGCCTTTGTTGAGGGAGTCCATTGGGATTCTGATGCAGCGAACTCCGCCCTCTCTGGACAATGCCCTGCCAGAATGCTACCAGAGGgtgcAGCAGTTGCAGGGTGTGTACAATCTGCAGGAGCCTCACTTCTGGACCCTATGCACAGATGTCTACATTGGCACAGTCAAGCTGCTAATTGCACCTGACGCTGACAGCAAATGGATTCTAAGCCAAACGCACAACATTTTCACACAGGCTGGAGTACGACAACTGTATGTCCAGATAGAAGTGGCGAcgatgtaggactcgttcctCGTATCTCCCTGGGACCAAAGCCTCTGTGCTGCTGTGGGGTTTCCTCCCCACCCTTTCCCCCCCTAAACCCCGCATCTCTTTAAAGTCCATCACAAACCAAGGACCAAGACGGAAGCAGCTACAGGACAAGTACACTGACTCTTGAGAGGACACAAGAAAATGGGGGAAACCAAAACTTGCCAATTATGATGCGCCGTCTGCGGGGAAAACGAGAACTTTGCACACACCCACTTACACACTTCCTAAACAGTAGAATGGGTGGATCTTAATGTCAGAGACCTATTTTGGTTTTatcattcccccccccctctccatttTAAGATGggattttaattaatttgtaactATTGTCTGCGTTAAAGTACACTTCAATGGACATTCGTGTTAAGCCCTGCAACCATGTAAGATTCATAGATAGTCTATTTTTATACGTCCATATGAGTCACACACAATTAACATGGGGCATATTCCATTTGGCCATTTAGTTGCACTTTGCACACTTGAGCCGTTCAACTGTCATTCTGGGTTTCTTAAGTGCCTTTTTCACCAAATCATGGACTGGAATCATGTCCCTCCAGACCCAAAAGGAATCAGATGACCAACATGGGTCTTGTTATTCCAACCCCTTGATCCAGCATCCCTTTGAGGGTTGTCATGGTATTTTTCCTAAGGGAATATTGTCATAATTCCCTGGACGGCACAGTGGTTTTATTTGAACCTTGAACAGCTGCTTACGACCTTGTCAAAGAGGATGGTTAAAACCGATGTAAGCCTAAAACCCATGATTTCATTGCCCTCATTGGTCTTACTTTAATGTAATGGGCCAAGTGTGCAGTTGGCCAGTTCCATTCTTATTTTGAAATGTAATAAATGATTTTACTGCATATAA
>XM_021603442.2
TCTATTGATCGGATGTATTGGCTGAGAGCTGAGTTGGTGGTTCCAGCTCAAACCAGcagtatttagctagctagcttggcaCAACCTGGGAGGGACTGCTAAAATGTTACCATTATCTATAAAAGACGACGAGTACAAGCCACCCAAATTCAACCTCCTCGCCAAGATTTCAGGATGGTTCAGATCAATCCTATCTGATAAAACATCACGCaatttgtttttctttctctgtctgaatCTGTCCTTTGCTTTTGTTGAATTATCGTACGGCATATGGAGTAACAGTTTAGGTTTGATATCAGATTCCTTTCACATGTTCTTTGACTGCACTGCACTTTTAGCCGGACTTGCAGCCTCTGTGATTTCCAGGTGGAGGTCGAATGACTCATTCTCATATGGATATGTGAGGGCGGAGGTGTTGGCAGGGTTTGTGAATGGCCTGTTCCTCATCTTCACCGCCTTCTTCATTTTCTCAGAAGGCGTAGAGAGGTTTTTGGAGCCGCCACACGTGAATCACGATCGTCTGCTCCCCGTGTCTGTCGCTGGGCTGCTGGTGAACCTGGTGGGCATCTTTGTGTTCCAGCACGGGGGCCACGGCCACTCTCACGGAGGGGATGAAGGTCACAGCCACAGCCACTCTCTGTTCAATGGCAATGCAGGTCACGGACACAGCCATGGGGGTCATGGGCACGAGTCCAAACATGGAGATGGGCACGAGCACAGCCATGGAGATGGACACGGGCACAGCCACGGAGGGCACAGCCACGGACATGGGCACAGCCACTCCCACAAGGAGCCCCACTGCCATGaTGAACTGCACACGCCAGGGAAGGGCTCCAGCAAACAGATTTTGCAAGGGGTGTTTTTACATATCGTAGCTGACACTCTGGGCAGTGTGGGAGTGATCATCTCAGCGCTCCTGATGCAGAAGTATGACCTGATGATCGCTGACCCCATCTGCTCCATGTGCATCTCCATTCTGATCGGAGTCAGTGTAGTGCCTTTGTTGAGGGAGTCCATTGGGATTCTGATGCAGCGAACTCCGCCCTCTCTGGACAATGCCCTGCCAGAATGCTACCAGAGGgtgcAGCAGTTGCAGGGTGTGTACAATCTGCAGGAGCCTCACTTCTGGACCCTATGCACAGATGTCTACATTGGCACAGTCAAGCTGCTAATTGCACCTGACGCTGACAGCAAATGGATTCTAAGCCAAACGCACAACATTTTCACACAGGCTGGAGTACGACAACTGTATGTCCAGATAGAAGTGGCGAcgatgtaggactcgttcctCGTATCTCCCTGGGACCAAAGCCTCTGTGCTGCTGTGGGGTTTCCTCCCCACCCTTTCCCCCCCTAAACCCCGCATCTCTTTAAAGTCCATCACAAACCAAGGACCAAGACGGAAGCAGCTACAGGACAAGTACACTGACTCTTGAGAGGACACAAGAAAATGGGGGAAACCAAAACTTGCCAATTATGATGCGCCGTCTGCGGGGAAAACGAGAACTTTGCACACACCCACTTACACACTTCCTAAACAGTAGAATGGGTGGATCTTAATGTCAGAGACCTATTTTGGTTTTatcattcccccccccctctccatttTAAGATGggattttaattaatttgtaactATTGTCTGCGTTAAAGTACACTTCAATGGACATTCGTGTTAAGCCCTGCAACCATGTAAGATTCATAGATAGTCTATTTTTATACGTCCATATGAGTCACACACAATTAACATGGGGCATATTCCATTTGGCCATTTAGTTGCACTTTGCACACTTGAGCCGTTCAACTGTCATTCTGGGTTTCTTAAGTGCCTTTTTCACCAAATCATGGACTGGAATCATGTCCCTCCAGACCCAAAAGGAATCAGATGACCAACATGGGTCTTGTTATTCCAACCCCTTGATCCAGCATCCCTTTGAGGGTTGTCATGGTATTTTTCCTAAGGGAATATTGTCATAATTCCCTGGACGGCACAGTGGTTTTATTTGAACCTTGAACAGCTGCTTACGACCTTGTCAAAGAGGATGGTTAAAACCGATGTAAGCCTAAAACCCATGATTTCATTGCCCTCATTGGTCTTACTTTAATGTAATGGGCCAAGTGTGCAGTTGGCCAGTTCCATTCTTATTTTGAAATGTAATAAATGATTTTACTGCATATAA
>XM_036977917.1
CCTCTATTGATCGGATGTATTGGCTGAGAGCTGAGTTGGTGGTTCCAGCTCAAACCAGcagtatttagctagctagcttggcaCAACCTGGGAGGGACTGCTAAAATGTTACCATTATCTATAAAAGACGACGAGTACAAGCCACCCAAATTCAACCTCCTCGCCAAGATTTCAGGATGGTTCAGATCAATCCTATCTGATAAAACATCACGCaatttgtttttctttctctgtctgaatCTGTCCTTTGCTTTTGTTGAATTATCGTACGGCATATGGAGTAACAGTTTAGGTTTGATATCAGATTCCTTTCACATGTTCTTTGACTGCACTGCACTTTTAGCCGGACTTGCAGCCTCTGTGATTTCCAGGTGGAGGTCGAATGACTCATTCTCATATGGATATGTGAGGGCGGAGGTGTTGGCAGGGTTTGTGAATGGCCTGTTCCTCATCTTCACCGCCTTCTTCATTTTCTCAGAAGGCGTAGAGAGGTTTTTGGAGCCGCCACACGTGAATCACGATCGTCTGCTCCCCGTGTCTGTCGCTGGGCTGCTGGTGAACCTGGTGGGCATCTTTGTGTTCCAGCACGGGGGCCACGGCCACTCTCACGGAGGGGATGAAGGTCACAGCCACAGCCACTCTCTGTTCAATGGCAATGCAGGTCACGGACACAGCCATGGGGGTCATGGGCACGAGTCCAAACATGGAGATGGGCACGAGCACAGCCATGGAGATGGACACGGGCACAGCCACGGAGGGCACAGCCACGGACATGGGCACAGCCACTCCCACAAGGAGCCCCACTGCCATGaTGAACTGCACACGCCAGGGAAGGGCTCCAGCAAACAGATTTTGCAAGGGGTGTTTTTACATATCGTAGCTGACACTCTGGGCAGTGTGGGAGTGATCATCTCAGCGCTCCTGATGCAGAAGTATGACCTGATGATCGCTGACCCCATCTGCTCCATGTGCATCTCCATTCTGATCGGAGTCAGTGTAGTGCCTTTGTTGAGGGAGTCCATTGGGATTCTGATGCAGCGAACTCCGCCCTCTCTGGACAATGCCCTGCCAGAATGCTACCAGAGGgtgcAGCAGTTGCAGGGTGTGTACAATCTGCAGGAGCCTCACTTCTGGACCCTATGCACAGATGTCTACATTGGCACAGTCAAGCTGCTAATTGCACCTGACGCTGACAGCAAATGGATTCTAAGCCAAACGCACAACATTTTCACACAGGCTGGAGTACGACAACTGTATGTCCAGATAGAAGTGGCGAcgatgtaggactcgttcctCGTATCTCCCTGGGACCAAAGCCTCTGTGCTGCTGTGGGGTTTCCTCCCCACCCTTTCCCCCCCTAAACCCCGCATCTCTTTAAAGTCCATCACAAACCAAGGACCAAGACGGAAGCAGCTACAGGACAAGTACACTGACTCTTGAGAGGACACAAGAAAATGGGGGAAACCAAAACTTGCCAATTATGATGCGCCGTCTGCGGGGAAAACGAGAACTTTGCACACACCCACTTACACACTTCCTAAACAGTAGAATGGGTGGATCTTAATGTCAGAGACCTATTTTGGTTTTatcattcccccccccctctccatttTAAGATGggattttaattaatttgtaactATTGTCTGCGTTAAAGTACACTTCAATGGACATTCGTGTTAAGCCCTGCAACCATGTAAGATTCATAGATAGTCTATTTTTATACGTCCATATGAGTCACACACAATTAACATGGGGCATATTCCATTTGGCCATTTAGTTGCACTTTGCACACTTGAGCCGTTCAACTGTCATTCTGGGTTTCTTAAGTGCCTTTTTCACCAAATCATGGACTGGAATCATGTCCCTCCAGACCCAAAAGGAATCAGATGACCAACATGGGTCTTGTTATTCCAACCCCTTGATCCAGCATCCCTTTGAGGGTTGTCATGGTATTTTTCCTAAGGGAATATTGTCATAATTCCCTGGACGGCACAGTGGTTTTATTTGAACCTTGAACAGCTGCTTACGACCTTGTCAAAGAGGATGGTTAAAACCGATGTAAGCCTAAAACCCATGATTTCATTGCCCTCATTGGTCTTACTTTAATGTAATGGGCCAAGTGTGCAGTTGGCCAGTTCCATTCTTATTTTGAAATGTAATAAATGATTTTACTGCATATAA

Function

NR:

description
zinc transporter 7-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG:

id description
K14692 SLC30A5_7, ZNT5_7, MTP, MSC2; solute carrier family 30 (zinc transporter), member 5/7

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977918.1 False 1995 mRNA 0.48 10 56789633 56816308
XM_021603442.2 False 2183 mRNA 0.48 11 56789633 56817063
XM_036977917.1 True 2185 mRNA 0.48 11 56789633 56817065

Neighbor

gene id symbol gene type direction distance location
LOC110524100 LOC106613588 coding downstream 59791 56726174 ~ 56729842 (-)
LOC110522975 LOC106613586 coding downstream 78134 56703896 ~ 56711499 (-)
si:dkey-121a11.3 LOC106613582 coding downstream 160726 56602883 ~ 56630974 (-)
LOC110524093 LOC106613579 coding downstream 209140 56578635 ~ 56580493 (-)
LOC118964624 NA coding downstream 242939 56510467 ~ 56546694 (-)
LOC100136253 LOC100526765 coding upstream 21442 56838507 ~ 56842447 (-)
gpr88 LOC106613990 coding upstream 43550 56860615 ~ 56862316 (-)
cdc14ab LOC106613592 coding upstream 47385 56864450 ~ 56913656 (-)
LOC110524106 LOC100195223 coding upstream 106851 56923916 ~ 56929200 (-)
LOC110524107 LOC106613595 coding upstream 146913 56963978 ~ 56973388 (-)
G418689 LOC106613587 non-coding downstream 87471 56698200 ~ 56702162 (-)
G418749 NA non-coding downstream 101061 56687084 ~ 56688572 (-)
G418687 NA non-coding downstream 186836 56601988 ~ 56602797 (-)
G418686 NA non-coding downstream 188642 56599690 ~ 56600991 (-)
G418835 NA non-coding upstream 40560 56857625 ~ 56858157 (-)
G418836 NA non-coding upstream 41193 56858258 ~ 56858492 (-)
G418839 NA non-coding upstream 41484 56858549 ~ 56858751 (-)
G418867 NA non-coding upstream 98380 56915445 ~ 56915660 (-)
G418872 LOC100194703 non-coding upstream 115237 56932302 ~ 56932694 (-)
G417527 NA other downstream 1179903 55608835 ~ 55609730 (-)
LOC110524071 LOC106613554 other downstream 1629366 55123617 ~ 55181458 (-)
G416110 NA other downstream 2403405 54363286 ~ 54392411 (-)
G415464 nexn other downstream 2783960 54002448 ~ 54005673 (-)
G418830 NA other upstream 16961 56834026 ~ 56834595 (-)
G419603 NA other upstream 793994 57611059 ~ 57611567 (-)
LOC110524128 LOC107602773 other upstream 802989 57612040 ~ 57627128 (-)
G419714 NA other upstream 882680 57699745 ~ 57705936 (-)
G420193 NA other upstream 1295322 58112387 ~ 58114060 (-)

Expression


Co-expression Network