LOC100135807 (LOC106613594)


Basic Information

Item Value
gene id LOC100135807
gene name LOC106613594
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56943838 ~ 56958165 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>NM_001124203.1
GAAACAAAGATGGCGGCAGTTACCAGAGGCTCATTCACATTTATTAGACGCTTGCTCTTGGCACATCGGTACAAGCTTTGCTGCTCCAGGGTCCAAACTGGCCGACCAGACTACACCCGTCATCCCCACACTGTCTTCATCCCTCAGCTGTGCAGCTCTAGGTTTTTCCACACCAGTTATGTCACATCAGGACCAATTCTGCCATTCAAACTGTCAGATATTGGCGAGGGCATCATGGAGGTGACGGTGAAGGAATGGTATGTGAAGGAAGGAGACAAAGTCTCCCAGTTTGATAGCATCTGTGAGGTACAGAGTGACAAGGCATCTGTCACCATCACAAGTCGCTATGACGGTGTCATTAAAAAGCTCTACTATGAGGTTGATGCCACAGCCTTAGTGGGCACACCCCTGGTGGATATCGAGACAGAGCCCGGTCCGGAGGTGGTCCATGAGGAGGATGTTGTGGAGACCCCGGCGATGTCAAACGATGAGCACACACACCAGGAAATCAAGGGACACAAGACCCAGGCCACTCCTGCAGTCCGTCGTTTAGCCATGGAGAACAATATCAAGCTGAGTGAAGTGGTCGGTACCGGGAGAGACGGACGGATCCTCAAAGAGGACATCCTCAACTTCCTGGCCAAACAGACAGGGGCCATCTTACCCCCGACCCCATTCCATGAGATCCAGCCACCCCCTCCCGCAGCATCCGCCCCCTCCTCGGCCTCCATGCCCAAGATGAAGCCCACACCAAGTGTCCAGCTCCCTGTCGTCTCCAGGCCCGTCTTCACGGGCAAGGACAGCACTGAGCACCTGAAAGGTTTTCACAAAGCAATGGTGAAGACCATGACTGCAGCTTTGAAGATCCCCCACTTTGGTTATAAAGATGAAGTGGATTTGACGAGGCTGGTGCAGTTGCGCAAGGAGCTGAAGGGCCTGTCAGAGGCTCGCGGTGTCAAGCTCAGCTACATGCCCTTCTTCATCAAGGCTGCTTCCCTGGGCCTTCTCCATTTCCCTATCCTCAACGCCTCGGTGGACGAGGCTGTTCAGAACATCACCTACAAGgcaTCCCACAATATTGGTCTGGCCATGGACACGAGCCAGGGCCTGCTGGTGCCCAATGTGAAGAATGTGCAGTTGCTGAGTGTGTTTGAGATCGCAGTGGAGCTCAACCGCATGCAGACCCTGGGCGCCACGGGCCAGCTGGGCACGGCTGACCTCACAGGAGGCACCTTCACCCTCTCCAACATTGGCTCGATTGGAGGCACTTATGCAAAGCCAGTAATTCTGCCTCCTGAGGTGGCGATTGGCGCTCTTGGAAAGATCCAGGTCCTACCCAGGTTTAACTCGAGGGACGAGGTGGTGAAAGCTCACGTCATGAACGTCAGCTGGTCGGCAGACCACCGGATCATCGACGGGGCCACCATGGCGCGGTTTTCCAACCTGTGGAGGGACTACTTGGAGAACCCGGCTTCTATGGTCCTGGATCTGAAATGAGCATGCGGTACCCTGGCCTGCATCCCCTGGACGCAAGCCCAGCGACGCAAAACCAGCCCCCATGATGATGTGAAGTTGGTCTACTGTACTCTGACTCTTTGGGTAGTCACTTTGACTGGGTGTTACTGGTCACCATACTGCTCCTGACCCCTTGGCCATCCAAACCTTTCTTCCTCCGAACATGGATGGCTGCACACGCCACGGACACCACAAGTTCCCTTACTACTCAACGTTGTGAAACTAATCTCTAGTTGCTGGCTGTTTTTATCTTTGTGTGTGGCCTTCGTTTGTTTGCTCTCTTCTGGTTGCCTTACTGACATAGGATGGGTATGAACAGTAGCGCTTTCTCCTGAAGAGCAGAATGTTGGaaggaaaactttttttttttttagtaaacCTGTTGTATTTCTGAAATACTGTATAACCCTGTAAAAATGTCTTTGCACCTTTTTGTTTTCTTACAGCCCCACACATTCCATCAATGCTAGAAAGCTATTTTCAAGAGAATGTGCGGTTTAGTGATTCCCTATGGAAAGCACCATTGCACAACATGCGCTTGTTAGTGTTCAtatcagctacagtgccttcaaag
>TU474030
GAAGAGAAACAAAGATGGCGGCAGTTACCAGAGGCTCATTCACATTTATTAGACGCTTGCTCTTGGCACATCGGTACAAGCTTTGCTGCTCCAGGGTCCAAACTGGCCGACCAGACTACACCCGTCATCCCCACACTGTCTTCATCCCTCAGCTGTGCAGCTCTAGGTTTTTCCACACCAGTTATGTCACATCAGGACCAATTCTGCCATTCAAACTGTCAGATATTGGCGAGGGCATCATGGAGGTGACGGTGAAGGAATGGTATGTGAAGGAAGGAGACAAAtacatttttactcctgaacttaggATTGCCAtaaagggggttgaatacttatcgactcaagatatttcagcttttcaattttaatttgtaaaaaacctttgacattatgggtgtgttgtgtgtaggccagtgataaCAATTCTCAATTTTATCAATTTTAAATTccggctgtaacaacaaaatgtggggtatgaatactttctgaaggcactgtatgatgtCAGCAGCTACTGGATAAAAGACGCCAATGGTTCCCCAATTGTTAGTTTGATCAATTTGTGTTACTGCTTTTCTTGCTGTTTGatgatgtttttaaaaaaaaaggaaaatattAAGTTATGGGTGGAAGTGAACACTTAAGCTTTGTTCGAATACACCATACTAACATACCGTATACTACCTACTCAATTTATGTCACAAATAgtgcggttagtatgagtattcgaacataACCTTAGTGTAGGGTTTTGGGAATGCGTACTGTGGTCTCTGTATTTGAGGGAGATTGTACTATTTGAAGGTGTGTGAGAAATGCCTGTCTGACTTAATCACCGTTTCTGATATTGTGCGGATcctgaaaacaagttttaataaatTTGAGGTGTAAAGATT

Function

NR:

description
branched-chain alpha-keto acid lipoamide acyltransferase

GO:

id name namespace
GO:0009081 branched-chain amino acid metabolic process biological_process
GO:0046949 fatty-acyl-CoA biosynthetic process biological_process
GO:0048037 obsolete cofactor binding molecular_function
GO:0043754 dihydrolipoyllysine-residue (2-methylpropanoyl)transferase activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
NM_001124203.1 False 2089 mRNA 0.52 11 56943843 56956322
TU474030 True 896 TUCP 0.40 5 56943838 56958165

Neighbor

gene id symbol gene type direction distance location
dph5 LOC106613590 coding upstream 155190 56779858 ~ 56788653 (+)
serpinc1 LOC106613587 coding upstream 241687 56696618 ~ 56702156 (+)
rc3h1a LOC106613585 coding upstream 255254 56658921 ~ 56688589 (+)
stil stil coding upstream 296753 56631796 ~ 56647090 (+)
LOC110524094 LOC106613581 coding upstream 350562 56585208 ~ 56593281 (+)
LOC110524109 LOC106613599 coding downstream 59606 57015928 ~ 57037694 (+)
LOC118964761 NA coding downstream 70003 57026325 ~ 57026460 (+)
nwd1 nwd1 coding downstream 82795 57039117 ~ 57061390 (+)
LOC110524113 LOC106613602 coding downstream 108590 57064912 ~ 57074729 (+)
c5h19orf25 cssa10h19orf25 coding downstream 120478 57076800 ~ 57078287 (+)
G418265 NA non-coding upstream 1178 56942425 ~ 56942665 (+)
G418264 NA non-coding upstream 1884 56941754 ~ 56941959 (+)
G418209 NA non-coding upstream 75638 56864489 ~ 56868205 (+)
G418210 NA non-coding upstream 79619 56863974 ~ 56864224 (+)
G418201 NA non-coding upstream 90444 56853054 ~ 56853399 (+)
G418252 NA non-coding downstream 7672 56963994 ~ 56965420 (+)
G418297 NA non-coding downstream 53864 57010186 ~ 57011064 (+)
G418295 LOC106613600 non-coding downstream 57295 57013617 ~ 57015171 (+)
G418323 NA non-coding downstream 83414 57039736 ~ 57039941 (+)
G418379 NA non-coding downstream 186659 57142981 ~ 57143200 (+)
G418251 rtca other upstream 18667 56923924 ~ 56925176 (+)
G418119 LOC106613588 other upstream 214022 56726185 ~ 56729821 (+)
G418077 LOC106613582 other upstream 315226 56617890 ~ 56628617 (+)
G416857 NA other upstream 1618572 55324645 ~ 55325271 (+)
G415946 NA other upstream 2330701 54590074 ~ 54613142 (+)
LOC110524119 LOC106613607 other downstream 409042 57352343 ~ 57367627 (+)
G419452 NA other downstream 928058 57884380 ~ 57899648 (+)
G420117 LOC100846954 other downstream 1456801 58411240 ~ 58418268 (+)
G420634 NA other downstream 1986406 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 3737935 60694220 ~ 60695905 (+)

Expression


Co-expression Network