LOC110524108 (LOC106613596)


Basic Information

Item Value
gene id LOC110524108
gene name LOC106613596
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 56985006 ~ 57002024 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603457.2
TAGTTTCAGGCATTTATTTTATGCCTGCTATGTTTGGTTAGGTAGTATAGGAAGTAGTGCTGACAACAAACACTTGAAAAGtttaatgtcaGGCCTGTCGTCTATGGAGTCCAAAGCCTGTTGTCGTGTGGGTGTTCTCACTGTGACCTACTACCTGTGGACCACCTTCATTGCGGTGGTGGTGGGTATCCTGCTGGTGATCATCATCAAGCCCGGTGTGGGCACTGAGATGGACAGCAACAGGCTAGGAGGAGGGCCCGTCATGACTTCTGCTGATGCCTTGCTAGATCTCATTAGGAATATGGTTCCTTCCAATCTTATTGAGGCGACATTTCAACAGTACAAAACAGATCTGGTCCGTATCCTGAAAGTCCCCAGAGTCACAGTACAGCCCAACTTTGTGTACATCATGCCTGACGATAGTGGCCCCACTGGTCGGGCGGTGTTCCTGGAGCTCACTCCACCCCCTGAGATTCACTACAAGACCAGAGCTGGCAGCAGCCAACAGATGAATGTGCTGGGGATTGTCATCTTCTCTGCCACCATGGGGCTGTTACTGGGGAAAATAGGCGAGAGAGGAGCACCACTAGTTCACTTGTGTCAGTGTATCAACGAATGTGTCATGAAAATCATCAACACTGCTGTTTGGTATTTTCCATTTGGGATCATATTTCTCATAGCTGGAAAAATGCTGGACATGCAGGACCCATCTACTCTTGGAAAGAAGCTGGGCTGGTACACTATCACTGTTCTGGCTGGGCTTTTTGTCCACGgcctcatcctcctccccttcttctacCTCATCCTGACTCGGAAAAACCCTTTCACTTTCATCAGAGGCCTGCTTCAAGCCTTGGTCATAGCACTGGCCACATCCTCAAGtTCTGCCACTCTGCCCATTACTATGAAGTGTTTGCTGGAGAACTGCAATGTGGATCGGCAGATAGCACGCTTCGTGCTGCCGGTAGGCGCCACCATTAACATGGACGGAACAGCTCTTTACGAGGCCGTGGCGGCCATCTTTATCGCCCAGGTCAACGATTATGAGCTGGACTTTAGCCAGCTGGTCACCATTAGTATAACAGCTACAGCTGCCAGCATAGGTGCTGCTGGGATCCCCCAGGCCGGCCTCGTCACCATGGTGATTGTGCTGACATCAGTGGGTCTGCCACCTGATGACATCACTCTCATTGTGTCCATCGACTGGGTACTGGACAGATTCCGAACCATGATCAACGTGCTGGGAGACGCCCTGGCAGTAGGAATCATCGGCCACTTATGTCAGAAAGACTTTCCTCGCAGACCTACTGGCAAGTCACAACCTTCATATGGCACACAGAACTCTCACAACATGCAGAACAGTGTGCCTATGACCGCGCTGCCTCTGCACAAGCAGGACTGCTGCTATGATGTGTTGGGGGCCACAGTCAATGAGAGGCCTACCATCTACTACAACATCTGTCAAGTTTAACTCCTGAAAAGACATTAACCTCAAATGACGGACAACTTTGGTGCACTTTTCCCCTACTCGTGCCATGAAACGGTACTGAAAGAACCTGCTCCTGCTGTCCCCTATCCAGTCTTTTTGTGACAGAACTTTTTGTGACTGAACATTTTCGCTTTGTCGGTGACACTGTAATGGACAAATCAGTGTTTTCCACAAATaccttttattaaaaaaaaataataattaaacagTGATGAGTTAGGAATCGGCCAAATGTACTACTACGATCTTGTCTATGTGGTATTGACTCTTGCTATTAACTCGAGTCGTCCAACGTGCTGTGGATTCACTGGATGTTTTTTTCTCACTGTTCCTCACCATGGTCTCTATGGTCCATGTGACAGTCATAATAACAGCATGCAGGTATGCATTTTGAACAACTTGTTTGGcttgattttatttttttgcatacAAAGGAAGTAGGTCTACTGTCGGGTCATACTGGACATTCTGGGTCAATGGCAATAAACTAATTTCACTCAACTTCGTCTTCTATTTAATGCGCCTAACATTTATTGGCAGTTTCAACAATCTAAAGGGAAAGTACAGGGGGGGAAATTTGTTTAATTCAAAACACGTCGTCTGattatctttttttttatatGTGACCCTGCTTTCCTTGTATTCAAAAACCTAAATGTAATGTTGccttaaataaaaaatgtcactTGTC
>XM_021603455.2
TGGAGGAGCTACTACTGCCCACAGATGGCAAGGAAACACGATACAACAATAGTACGTATTCTCCAAGAGGAGACTCTGGGGGGAAACCCATGTACGAACGCGTCAAGACATTTTTACATGGGACTTTCGTCGTTGACTTGAAACAGTGGCTGAGGGAGTACCTGAAGCTCAACGGCTTGCTGACACTCTCGGTTTTTGCCGTGTTGGCCGGCTGTCTCCTGGGGTTCATGTTGAGAGGGAGCCATCTCTCTACCCAGGCTAAGATTTATTTTTCATTCCCTGGAGAACTTCTCATGAGAGTGCTCAAAATGCTGATCCTCCCCCTCATCACGTCCAGtttaatgtcaGGCCTGTCGTCTATGGAGTCCAAAGCCTGTTGTCGTGTGGGTGTTCTCACTGTGACCTACTACCTGTGGACCACCTTCATTGCGGTGGTGGTGGGTATCCTGCTGGTGATCATCATCAAGCCCGGTGTGGGCACTGAGATGGACAGCAACAGGCTAGGAGGAGGGCCCGTCATGACTTCTGCTGATGCCTTGCTAGATCTCATTAGGAATATGGTTCCTTCCAATCTTATTGAGGCGACATTTCAACAGTACAAAACAGATCTGGTCCGTATCCTGAAAGTCCCCAGAGTCACAGTACAGCCCAACTTTGTGTACATCATGCCTGACGATAGTGGCCCCACTGGTCGGGCGGTGTTCCTGGAGCTCACTCCACCCCCTGAGATTCACTACAAGACCAGAGCTGGCAGCAGCCAACAGATGAATGTGCTGGGGATTGTCATCTTCTCTGCCACCATGGGGCTGTTACTGGGGAAAATAGGCGAGAGAGGAGCACCACTAGTTCACTTGTGTCAGTGTATCAACGAATGTGTCATGAAAATCATCAACACTGCTGTTTGGTATTTTCCATTTGGGATCATATTTCTCATAGCTGGAAAAATGCTGGACATGCAGGACCCATCTACTCTTGGAAAGAAGCTGGGCTGGTACACTATCACTGTTCTGGCTGGGCTTTTTGTCCACGgcctcatcctcctccccttcttctacCTCATCCTGACTCGGAAAAACCCTTTCACTTTCATCAGAGGCCTGCTTCAAGCCTTGGTCATAGCACTGGCCACATCCTCAAGtTCTGCCACTCTGCCCATTACTATGAAGTGTTTGCTGGAGAACTGCAATGTGGATCGGCAGATAGCACGCTTCGTGCTGCCGGTAGGCGCCACCATTAACATGGACGGAACAGCTCTTTACGAGGCCGTGGCGGCCATCTTTATCGCCCAGGTCAACGATTATGAGCTGGACTTTAGCCAGCTGGTCACCATTAGTATAACAGCTACAGCTGCCAGCATAGGTGCTGCTGGGATCCCCCAGGCCGGCCTCGTCACCATGGTGATTGTGCTGACATCAGTGGGTCTGCCACCTGATGACATCACTCTCATTGTGTCCATCGACTGGGTACTGGACAGATTCCGAACCATGATCAACGTGCTGGGAGACGCCCTGGCAGTAGGAATCATCGGCCACTTATGTCAGAAAGACTTTCCTCGCAGACCTACTGGCAAGTCACAACCTTCATATGGCACACAGAACTCTCACAACATGCAGAACAGTGTGCCTATGACCGCGCTGCCTCTGCACAAGCAGGACTGCTGCTATGATGTGTTGGGGGCCACAGTCAATGAGAGGCCTACCATCTACTACAACATCTGTCAAGTTTAACTCCTGAAAAGACATTAACCTCAAATGACGGACAACTTTGGTGCACTTTTCCCCTACTCGTGCCATGAAACGGTACTGAAAGAACCTGCTCCTGCTGTCCCCTATCCAGTCTTTTTGTGACAGAACTTTTTGTGACTGAACATTTTCGCTTTGTCGGTGACACTGTAATGGACAAATCAGTGTTTTCCACAAATaccttttattaaaaaaaaataataattaaacagTGATGAGTTAGGAATCGGCCAAATGTACTACTACGATCTTGTCTATGTGGTATTGACTCTTGCTATTAACTCGAGTCGTCCAACGTGCTGTGGATTCACTGGATGTTTTTTTCTCACTGTTCCTCACCATGGTCTCTATGGTCCATGTGACAGTCATAATAACAGCATGCAGGTATGCATTTTGAACAACTTGTTTGGcttgattttatttttttgcatacAAAGGAAGTAGGTCTACTGTCGGGTCATACTGGACATTCTGGGTCAATGGCAATAAACTAATTTCACTCAACTTCGTCTTCTATTTAATGCGCCTAACATTTATTGGCAGTTTCAACAATCTAAAGGGAAAGTACAGGGGGGGAAATTTGTTTAATTCAAAACACGTCGTCTGattatctttttttttatatGTGACCCTGCTTTCCTTGTATTCAAAAACCTAAATGTAATGTTGccttaaataaaaaatgtcactTGTC
>XM_021603456.2
TGGAGGAGCTACTACTGCCCACAGATGGCAAGGAAACACGATACAACAATAGTACGTATTCTCCAAGAGGAGACTCTGGGGGGAAACCCATGTACGAACGCGTCAAGACATTTTTACATGGGACTTTCGTCGTTGACTTGAAACAGTGGCTGAGGGAGTACCTGAAGCTCAACGGCTTGCTGACACTCTCGGTTTTTGCCGTGTTGGCCGGCTGTCTCCTGGGGTTCATGTTGAGAGGGAGCCATCTCTCTACCCAGGCTAAGATTTATTTTTCATTCCCTGGAGAACTTCTCATGAGAGTGCTCAAAATGCTGATCCTCCCCCTCATCACGTCCAGtttaatgtcaGGCCTGTCGTCTATGGAGTCCAAAGCCTGTTGTCGTGTGGGTGTTCTCACTGTGACCTACTACCTGTGGACCACCTTCATTGCGGTGGTGGTGGGTATCCTGCTGGTGATCATCATCAAGCCCGGTGTGGGCACTGAGATGGACAGCAACAGGCTAGGAGGAGGGCCCGTCATGACTTCTGCTGATGCCTTGCTAGATCTCATTAGGAATATGGTTCCTTCCAATCTTATTGAGGCGACATTTCAACAGTACAAAACAGATCTGGTCCGTATCCTGAAAGTCCCCAGAGTCACAGTACAGCCCAACTTTGTGTACATCATGCCTGACGATAGTGGCCCCACTGGTCGGGCGGTGTTCCTGGAGCTCACTCCACCCCCTGAGATTCACTACAAGACCAGAGCTGGCAGCAGCCAACAGATGAATGTGCTGGGGATTGTCATCTTCTCTGCCACCATGGGGCTGTTACTGGGGAAAATAGGCGAGAGAGGAGCACCACTAGTTCACTTGTGTCAGTGTATCAACGAATGTGTCATGAAAATCATCAACACTGCTGTTTGGTATTTTCCATTTGGGATCATATTTCTCATAGCTGGAAAAATGCTGGACATGCAGGACCCATCTACTCTTGGAAAGAAGCTGGGCTGGTACACTATCACTGTTCTGGCTGGGCTTTTTGTCCACGgcctcatcctcctccccttcttctacCTCATCCTGACTCGGAAAAACCCTTTCACTTTCATCAGAGGCCTGCTTCAAGCCTTGGTCATAGCACTGGCCACATCCTCAAGtTCTGCCACTCTGCCCATTACTATGAAGTGTTTGCTGGAGAACTGCAATGTGGATCGGCAGATAGCACGCTTCGTGCTGCCGGTAGGCGCCACCATTAACATGGACGGAACAGCTCTTTACGAGGCCGTGGCGGCCATCTTTATCGCCCAGGTCAACGATTATGAGCTGGACTTTAGCCAGCTGGTCACCATTAGTATAACAGCTACAGCTGCCAGCATAGGTGCTGCTGGGATCCCCCAGGCCGGCCTCGTCACCATGGTGATTGTGCTGACATCAGTGGGTCTGCCACCTGATGACATCACTCTCATTGTGTCCATCGACTGGGGACAGATTCCGAACCATGATCAACGTGCTGGGAGACGCCCTGGCAGTAGGAATCATCGGCCACTTATGTCAGAAAGACTTTCCTCGCAGACCTACTGGCAAGTCACAACCTTCATATGGCACACAGAACTCTCACAACATGCAGAACAGTGTGCCTATGACCGCGCTGCCTCTGCACAAGCAGGACTGCTGCTATGATGTGTTGGGGGCCACAGTCAATGAGAGGCCTACCATCTACTACAACATCTGTCAAGTTTAACTCCTGAAAAGACATTAACCTCAAATGACGGACAACTTTGGTGCACTTTTCCCCTACTCGTGCCATGAAACGGTACTGAAAGAACCTGCTCCTGCTGTCCCCTATCCAGTCTTTTTGTGACAGAACTTTTTGTGACTGAACATTTTCGCTTTGTCGGTGACACTGTAATGGACAAATCAGTGTTTTCCACAAATaccttttattaaaaaaaaataataattaaacagTGATGAGTTAGGAATCGGCCAAATGTACTACTACGATCTTGTCTATGTGGTATTGACTCTTGCTATTAACTCGAGTCGTCCAACGTGCTGTGGATTCACTGGATGTTTTTTTCTCACTGTTCCTCACCATGGTCTCTATGGTCCATGTGACAGTCATAATAACAGCATGCAGGTATGCATTTTGAACAACTTGTTTGGcttgattttatttttttgcatacAAAGGAAGTAGGTCTACTGTCGGGTCATACTGGACATTCTGGGTCAATGGCAATAAACTAATTTCACTCAACTTCGTCTTCTATTTAATGCGCCTAACATTTATTGGCAGTTTCAACAATCTAAAGGGAAAGTACAGGGGGGGAAATTTGTTTAATTCAAAACACGTCGTCTGattatctttttttttatatGTGACCCTGCTTTCCTTGTATTCAAAAACCTAAATGTAATGTTGccttaaataaaaaatgtcactTGTC

Function

NR:

description
PREDICTED: excitatory amino acid transporter 5-like isoform X2

GO:

id name namespace
GO:0006835 dicarboxylic acid transport biological_process
GO:0035725 sodium ion transmembrane transport biological_process
GO:0016020 membrane cellular_component
GO:0017153 sodium molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603457.2 False 2180 mRNA 0.46 10 56985006 56998919
XM_021603455.2 False 2436 mRNA 0.47 11 56985006 57002024
XM_021603456.2 True 2431 mRNA 0.47 11 56985006 57002024

Neighbor

gene id symbol gene type direction distance location
LOC110524107 LOC106613595 coding downstream 11618 56963978 ~ 56973388 (-)
LOC110524106 LOC100195223 coding downstream 55806 56923916 ~ 56929200 (-)
cdc14ab LOC106613592 coding downstream 71350 56864450 ~ 56913656 (-)
gpr88 LOC106613990 coding downstream 122690 56860615 ~ 56862316 (-)
LOC100136253 LOC100526765 coding downstream 142559 56838507 ~ 56842447 (-)
LOC110524111 LOC106613601 coding upstream 5625 57007649 ~ 57011401 (-)
LOC110524110 LOC106613600 coding upstream 9598 57011622 ~ 57015940 (-)
apc2 apc2 coding upstream 76551 57078575 ~ 57114865 (-)
LOC110524120 LOC106613608 coding upstream 346946 57348970 ~ 57351000 (-)
LOC110524122 LOC106613611 coding upstream 442152 57444176 ~ 57459501 (-)
G418910 NA non-coding downstream 342 56983438 ~ 56984664 (-)
G418908 NA non-coding downstream 2134 56982650 ~ 56982872 (-)
G418895 NA non-coding downstream 26852 56955569 ~ 56958154 (-)
G418892 NA non-coding downstream 31076 56953552 ~ 56953930 (-)
G418872 LOC100194703 non-coding downstream 52312 56932302 ~ 56932694 (-)
G418890 LOC106613599 non-coding upstream 20194 57022218 ~ 57037688 (-)
G418932 NA non-coding upstream 38588 57040612 ~ 57040846 (-)
G418927 NA non-coding upstream 73327 57075351 ~ 57076065 (-)
G418970 NA non-coding upstream 112979 57115003 ~ 57115204 (-)
G418971 NA non-coding upstream 113886 57115910 ~ 57116208 (-)
G418830 NA other downstream 150411 56834026 ~ 56834595 (-)
LOC110522975 LOC106613586 other downstream 273622 56703896 ~ 56711499 (-)
G417527 NA other downstream 1375276 55608835 ~ 55609730 (-)
LOC110524071 LOC106613554 other downstream 1824739 55123617 ~ 55181458 (-)
G416110 NA other downstream 2598778 54363286 ~ 54392411 (-)
G419603 NA other upstream 609035 57611059 ~ 57611567 (-)
LOC110524128 LOC107602773 other upstream 618030 57612040 ~ 57627128 (-)
G419714 NA other upstream 697721 57699745 ~ 57705936 (-)
G420193 NA other upstream 1110363 58112387 ~ 58114060 (-)
G420421 NA other upstream 1411104 58413128 ~ 58414143 (-)

Expression


Co-expression Network