LOC110524111 (LOC106613601)


Basic Information

Item Value
gene id LOC110524111
gene name LOC106613601
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57007649 ~ 57011401 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036977928.1
CAGGGGGAAAACATGTATCGATGTATCAAAATATATGATCATACACCGGGAATGTGATAAACATGTACAGTAATATACATATATTCAATTTGGACATTTTGAAactataaaaaaatgttttgcctcCTGAGCAGCAGTGTGCGGATTTCTGTTTTCCATTGATAtttagcaaaaaaaaatattttcagggGCTTAGCATTAATTTTCAGGAACTCGCTCAAATGGAGACTTCTGTTTACAAAAGCGTTCAACGAAACGTCATCATATATAATGATATGCTCTCCACCAATCAAACGTTTACGTTGTGTGAACACGAAGTGTCACCAGAACAAGGAATGAAGCTGTGAAGGGAAGGTGTACAACAGTTGATGTCACAGCCTCTCGGACCAGGACCAGCATGACAAGACATATCTCTGTTTCTGACAGAAAATAGGAGAAGAGGCTTTGAGGGTTATGTGCCACTCATATTACTGAGCGATACCATATCTGGACATTATGGAGCTTGTAGTGGCCAAGGTCCTTTGCCTTCTGGGAGTGTTTTCCCTCATGTTGGCTGGGATTCTTCTCCCAGTGCGACTCATGATTCAGGTGGACTTTGAAAAAGCCCCAAGGTACAGGAAGGCTCTTGCACTCTGCAATTCTTTTGGAGGGGGTGTATTTCTGGCCACTTGCTTCAATGCTCTTTTGCCTGCCGTACGAGACAAGGTGGATGAGGTCCTTAAACTGGTGAATATCACCACAGACTACCCACTGGCAGAGACCATGATGATGCTGGGCTTCTTCCTCACAGTCTTCGTGGAGCAGGCAGTGCTCACCTTCAAGAAGGAGAAGCCATCTTTCATTGACCTGGAAACTTTCAACGCAAGGAGCTCAGAGGCTGGTAGCGACTCTGAGTACGACGCTCCATTCATCTCCCCCACCCGGGGCTCCCCTGTGAGCCGCCACCACCACGGGCATCACCATGGACACCTCAGCCCCACCGAGCTGGCCAGAGCTGGGCCTCTACGGCTGGCCAGCCTGGTCCTGGCTCTCTCTGCCCATTCTGTGTTTGAGGGACTGGCGCTGGGCCTCCAGGAGGACGGGGCCAAGCTTGGAAGCCTCTTCCTGGGGGTGGGCATCCACGAGACCCTGGCTGCCGTGGCTCTGGGGGTGAGTGTTGCCAAAGCTTCTTTGCCCATGAGGGATGCCATCAAACTGGGTGTGACGGTCAGCCTCATGATACCCATTGGCATCGGACTGGGCATGTGCATCAATAGTGCCCAGAACCTGGCAGGCAGTATTGCATCGGTGGTGCTCCAAGGCCTGGCTGCTGGTACTTTCCTCTTTGTCACCTTCTTTGAGATCCTGTCTCGGGAGCTGGAGGATAAACATGACAGACTGCTTAAGGTGCTCTTTCTCATACTGGGCTATGGAGTTCTAGCAGGCCTAATGTTCATCAAATGGTGATGGAAGGAAGAAGCCTTTTAATGCAATCAGTTGTCTGATTATCACACTGACCACAATTTGTATTGTGTGCACATAGGCACTACCAaagtaaatgttttttatttggtAAAGGGGAACAGTAAATCAAGTATCGTAGTTTTTTTCTTTGCACTGGAACATGTTTGCTTACCAAGTCAGGCTATGTTACTGTGTTAGTTTCTGCCATAGGGAATACATGCTCCTGACATTGATTAGTAATGGTAAAGCTAGTCACTTTGATAGTATATGTTTCCAGAGACCGGATGAAAACGGATGTCGAGAGATCCGGAAAACAAATTTATAGCATCTATAGTAAAGACTCATTTTGGTAGTGAAGTGAACGACTTGTAACATAAAGGAAACCTTTATTGAAGAAAATGTGCTACGTGCCGTGATATGTAACTGATATTAACATATTGATGTTTGTGGTTGAAGGATATAATGGTGGTTAGTATGAAGTGGTTCATTttgtctcctgtctggtctatGTACCTGCTGTTTCCATGATCAGTAAGCTATGTGTTCAAATATGTGCATATTTCAATGTACCATTGTCAAATGTAAACAGTTTCGATTTGTTTTTGTCTGTTGGGGTAAGTGTTTCCTAGAATGAATAGCCCAATAAGGAGTTCCTAATTGTGTAATTTTTGTTGCATACTTTAGCCTTTTTACAATTATTACCCTAACTCCCTAATCAAATAAGAATCAATTCACTGGAAACCGTTTGTGTAGCCTGGTGTATGGTCCTGATATTTGTCACGTTGAGATTATATCAATGGTTTCCTTTTCAAGATGTTATTTTTAGGTTTATGTTAACAGGGAGTCACATTGAGACCCATGTCTCTCTATATGAATTATGGGGTACAGATATGATATCAGCAGTAGAGGctgtctgttttttatttgtcttTTCCACAGTTAGTTTTGACAGATCATTTTACACAGCTTAGAGGAATTCCATTTTCacctaaatacattttatttttatttatttttttattttttttacttgtgaaAAATGTTTTGCTCCTGATGTGAATGTGTAGAACTTAACATGTTTTGCAGAAGACACTTACTGGAGGAAGCCTACTGTAAAAGGTACATTTGTAAAGCTCAACCCTTATTGTGCTCCCTAAAATCTACATAAGATCAATTGTTCAAATGTATTGTAGGGCACAGTTATACATTGAATGTGTCCATATCAATTTGTGCTTTTAGGGTCTTAAAACAAAAGGAAACTTTCATTATTGTGAAAATAGTTttaatgcaaaaaatatatattcagtgGCAACCAGCTTTCCTTTATATAATGAACAGTGAAATGCAAATAAGTTATGACTTCTATTACAACATGGGGTTGGTGATGGTTAAATACTTTATTTATATTAGATAATAGCAGCCCTTCAATGAAAACTGTTTGCAATGTTGTGACAAATGTTTAACGCAaactatttttatatatattctgTGTATTACATGTTTTGGCAGTGAGGTTTTCCATTTTAATTTGATTGAATTGAGCATTAAAGAAAACCTTACTCACA

Function

NR:

description
zinc transporter ZIP3-like

GO: NA

KEGG:

id description
K14709 SLC39A1_2_3, ZIP1_2_3; solute carrier family 39 (zinc transporter), member 1/2/3

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036977928.1 True 3008 mRNA 0.41 3 57007649 57011401

Neighbor

gene id symbol gene type direction distance location
LOC110524108 LOC106613596 coding downstream 5625 56985006 ~ 57002024 (-)
LOC110524107 LOC106613595 coding downstream 34261 56963978 ~ 56973388 (-)
LOC110524106 LOC100195223 coding downstream 78449 56923916 ~ 56929200 (-)
cdc14ab LOC106613592 coding downstream 93993 56864450 ~ 56913656 (-)
gpr88 LOC106613990 coding downstream 145333 56860615 ~ 56862316 (-)
LOC110524110 LOC106613600 coding upstream 221 57011622 ~ 57015940 (-)
apc2 apc2 coding upstream 67174 57078575 ~ 57114865 (-)
LOC110524120 LOC106613608 coding upstream 337569 57348970 ~ 57351000 (-)
LOC110524122 LOC106613611 coding upstream 432775 57444176 ~ 57459501 (-)
LOC110524123 LOC106613612 coding upstream 448763 57460164 ~ 57537912 (-)
G418910 NA non-coding downstream 22985 56983438 ~ 56984664 (-)
G418908 NA non-coding downstream 24777 56982650 ~ 56982872 (-)
G418895 NA non-coding downstream 49495 56955569 ~ 56958154 (-)
G418892 NA non-coding downstream 53719 56953552 ~ 56953930 (-)
G418872 LOC100194703 non-coding downstream 74955 56932302 ~ 56932694 (-)
G418890 LOC106613599 non-coding upstream 10817 57022218 ~ 57037688 (-)
G418932 NA non-coding upstream 29211 57040612 ~ 57040846 (-)
G418927 NA non-coding upstream 63950 57075351 ~ 57076065 (-)
G418970 NA non-coding upstream 103602 57115003 ~ 57115204 (-)
G418971 NA non-coding upstream 104509 57115910 ~ 57116208 (-)
G418830 NA other downstream 173054 56834026 ~ 56834595 (-)
LOC110522975 LOC106613586 other downstream 296265 56703896 ~ 56711499 (-)
G417527 NA other downstream 1397919 55608835 ~ 55609730 (-)
LOC110524071 LOC106613554 other downstream 1847382 55123617 ~ 55181458 (-)
G416110 NA other downstream 2621421 54363286 ~ 54392411 (-)
G419603 NA other upstream 599658 57611059 ~ 57611567 (-)
LOC110524128 LOC107602773 other upstream 608653 57612040 ~ 57627128 (-)
G419714 NA other upstream 688344 57699745 ~ 57705936 (-)
G420193 NA other upstream 1100986 58112387 ~ 58114060 (-)
G420421 NA other upstream 1401727 58413128 ~ 58414143 (-)

Expression


Co-expression Network