LOC110524110 (LOC106613600)


Basic Information

Item Value
gene id LOC110524110
gene name LOC106613600
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57011622 ~ 57015940 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603459.2
GTAGTGATGACGTCTAACACTTGCGACGAAGTCAACACCTTTTTTGCTATCATCACCAGACCTATCAGCAGAGATACCTTTCTAATATCTCTGGCACCACCAGCTACTGCAAGAAGCACCTGAAGCAAAGGCAACTGGGTCCCTCACAATACACTTTCTACTAAGGGGTTTGGACCTCAATCCAAAATGACTGACACAAAGCGTCTTGCCTTCTCCATCATTCACTTTCTTCATGATCAACTGGGCTCTGGGAGTCTATCATCAGATGCTCAGGAAAGTTTAGAAGTTGCAGTCCAATGCCTGGAGACCGCCTTCAATGTCTCGACCGACGACCAGACcctagctgtcactcaaacgCTACCAGAGATTTTTGCCTCTGCGACACTGAAGCATCCAAACACCCTCCAAGTGAATATAAACACAGCCACAGATTCCCCcactgaggaggaagaggcagaggcTGAGCGACTCAAAACTGATGGGAATGATCAAATGAGGGTTGAGAACTATGGGGCAGCTGTGGAATTCTACTCAAAGGCTATTGCCATAAACCCCCAGAATGGAGTTTACTACTGCAACAGGGCTGCTGCATACAGCAAACTAGGCAACTACGCTGGAGCAGTGCAGGACTGTGAACTTGCCATTGGTATTGACCCAAACTACAGCAAAGCGTATGGAAGAATGGGTTTGGCTCTAGCCAgtttaaacaaacacacagaagcTGTAAGTTATTACAAAAAAGCCCTGGAGTTGGACCCAGAGAACGACACCTACAAATCCAACCTGAAAATAGCAGAGCAGAAAATGGAGACTCCAAGCCCAACAGGGGGAGTGGGAGGAGTTGATCTGGCTGGGTTGCTCAGTAACCCTGGTTTCATGAACATGGCATCTGGTTTGATGAACAACCCACAAGTACAGCAACTGATGTCGGGGATGATGTCAGGGGCTTACGGGCCAATGGGACCTCCAGCAGCGTCTGGAGTAGGTCCTGGCTTAGGTGCAGGACCAGGGCCTGtaccagggttagggttgggagccGGACCGGCAGCAGGAGTTGGAGTAGGGGGAGCGGGTCCGGGTGACATCTCTGGTCTCATCCAAGCGGGCCAACAATTTGCGCAGCAGATGCAACAGCAGAACCCAGAGTTAATTGAACAGCTGAGGAGTCAAATTCGCAGCCGGCCGTCTAGCGCTAGCAACGATGAGCAACCTTGACCCTCAGACGGAGAGAGATTTGTGTGTGGAAAAGTGAAGACGGCCTGTGTcctttttttttgtaatttgtaTTATTCTCGCAACTCCGGGGACAAAAAGCTTTTCTTCACTGAGTAATTATTGCATGTgcagcccctccctcccctccaagGAAACCAGTCAGTGAAACTTTGATCAAATTTGATAAACCCACTGTCAACAGATATCTATCTAGTCTGAAGTGTATGGATTGAGTGGATCTGTTATACTCCAATCTGCAATGTCATGCCAGTATAGCACTTGGTTTAACTGTTTAATGTTACTAATCCTTGCCAGTGAACTGAATCACTACACCCCCAGTGGACTAAATGCAGTTGCATCACTTGAACTTTGTCATTTCAGGTGCACAACAACAGATAGTATGTGATATATTTCAGCAGCCACCTTAATTTGAGAAGCATCTATTTGTACAGAGATATACTGGTAGGCAAAGATGGCATGTAGAGTACTGTCAACATTATGGGAATTAAATGGACCATTACAAATAGGACCTTTTTATGGTTGTTGACTTGTCTAGTGTAATCCAGGAGTTGTTTCAGCATTTTTATTGAGTTGCACGATAACACCTACAGTCCACTTTGTTCTTATTTTGTCATGAGAAATTTGTTTTTTCTAACAACATGGGTGGCTGTCTGGGAACAAAAACAATCTTTTATTAAATCACACTTAGCCTAACATGTTTACTTGATTGTAAACCTATTGTTTATTTCAACTCAGGAAGTGAGTTGAAATTCAATTCATGAATATATTTTCTAAATGGAGTTGAATTCATCAATTGAAGTTCAATTCTTTCTTTGAGTTGACTGAAGATTGAATTGATGCCAAGTACCCTATGTGCACtgaaacataaataaataaaaaactgccTTGCA

Function

NR:

description
small glutamine-rich tetratricopeptide repeat-containing protein alpha-like

GO: NA

KEGG:

id description
K16365 SGTA; small glutamine-rich tetratricopeptide repeat-containing protein alpha

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603459.2 True 2126 mRNA 0.45 12 57011622 57015940

Neighbor

gene id symbol gene type direction distance location
LOC110524111 LOC106613601 coding downstream 221 57007649 ~ 57011401 (-)
LOC110524108 LOC106613596 coding downstream 9598 56985006 ~ 57002024 (-)
LOC110524107 LOC106613595 coding downstream 38234 56963978 ~ 56973388 (-)
LOC110524106 LOC100195223 coding downstream 82422 56923916 ~ 56929200 (-)
cdc14ab LOC106613592 coding downstream 97966 56864450 ~ 56913656 (-)
apc2 apc2 coding upstream 62635 57078575 ~ 57114865 (-)
LOC110524120 LOC106613608 coding upstream 333030 57348970 ~ 57351000 (-)
LOC110524122 LOC106613611 coding upstream 428236 57444176 ~ 57459501 (-)
LOC110524123 LOC106613612 coding upstream 444224 57460164 ~ 57537912 (-)
plppr3b LOC106613613 coding upstream 570945 57586885 ~ 57605528 (-)
G418910 NA non-coding downstream 26958 56983438 ~ 56984664 (-)
G418908 NA non-coding downstream 28750 56982650 ~ 56982872 (-)
G418895 NA non-coding downstream 53468 56955569 ~ 56958154 (-)
G418892 NA non-coding downstream 57692 56953552 ~ 56953930 (-)
G418872 LOC100194703 non-coding downstream 78928 56932302 ~ 56932694 (-)
G418890 LOC106613599 non-coding upstream 6278 57022218 ~ 57037688 (-)
G418932 NA non-coding upstream 24672 57040612 ~ 57040846 (-)
G418927 NA non-coding upstream 59411 57075351 ~ 57076065 (-)
G418970 NA non-coding upstream 99063 57115003 ~ 57115204 (-)
G418971 NA non-coding upstream 99970 57115910 ~ 57116208 (-)
G418830 NA other downstream 177027 56834026 ~ 56834595 (-)
LOC110522975 LOC106613586 other downstream 300238 56703896 ~ 56711499 (-)
G417527 NA other downstream 1401892 55608835 ~ 55609730 (-)
LOC110524071 LOC106613554 other downstream 1851355 55123617 ~ 55181458 (-)
G416110 NA other downstream 2625394 54363286 ~ 54392411 (-)
G419603 NA other upstream 595119 57611059 ~ 57611567 (-)
LOC110524128 LOC107602773 other upstream 604114 57612040 ~ 57627128 (-)
G419714 NA other upstream 683805 57699745 ~ 57705936 (-)
G420193 NA other upstream 1096447 58112387 ~ 58114060 (-)
G420421 NA other upstream 1397188 58413128 ~ 58414143 (-)

Expression

LOC110524110(LOC106613600) Expression in all Baseline Samples

Bar chart with 20 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 60.
End of interactive chart.

LOC110524110(LOC106613600) Expression in each Bioproject

Bar chart with 21 bars.
LOC110524110(LOC106613600) Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 1500.
End of interactive chart.

Co-expression Network