LOC110524120 (LOC106613608)


Basic Information

Item Value
gene id LOC110524120
gene name LOC106613608
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57348970 ~ 57351000 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603472.2
AGTTTCGCACGATTGTGTCAGAAACCACTGAGCCATAGACAGGAGAACTATTACAAGGACTTTGCAATTCAACAACGAGCGAGTTTACGCTGAAACACTGCAAGTTAACCTATACCATATTGGATTACTTCATTGACACGGACGTTCTGCAAACCTCGATTCGGGAATATACTCATTGGAGATTATCCTGAATAACCTTGTGGATTATACAATTACGGATTTCAATATGACTCTGGAGGAACTCGTCGGATGCAATATCACTGAGAAAAAGATGGAGACCGTGAATCAAGCACTAGAAGAGCTGCTGGTGGCAGCGCAGCAACAAGACTGCCTGACTGTGGGAGTCTACGAGTCTGCAAAGCTGATGAATGTTGATCCtgacagtgttgtgttgtgtgttctgGCGACTGACGAGGATGTCATTCCACTGCAGATTCACTTCACGCTCATCCAAGCCTTCTGTTGCGACAACGACATCAACATACTGCGTGTCTCCGGCATGAGTCGCCTCGCTCAGGTTCTTGGCGAGCCAAGCACCGCTGACAGCAACGGCAACGAGCCCAATGATCTGCACTGCATCCTTGTCACTAACACCCAGTGCCAATCTCTGAAATGCCAAGCGTTGCAGGATGTCGGCAACTACTGCGAGGAGAGTCGCTGCAAGAACCAATGGGTACCTTACCTGTCCCTGCAGGAGCGCTGAACTAATGACCCTCGCTGAGAAACGTGAAAGCGATGAAAACAAGTGAACAAGTCGTCATTCTTCCAGAATGAGAAAGGCGTTCAAGAAGGGGCATCGTCGACATGCCCGTGTTTGCCTGCCCTGGGCCGCTATCCAGTGACGGAGATGAGCATGCGAAGGTTCCGATGGACAATGCGCATACAACCATGACGCATCTGACCCCGCTCTCTTCCTTCGCGGAAAGGAACTGTGTCGGCGGGAGTGGGGCGTAGGAACGAACTGTAGAGAAATCTCGCTGCTGTTTGCCCAGCCATGTTGGAACAACCGGCGGGGGCGGTTGCATCGCGTGGGAACGGACTTGCAGTTTCGTTATTTGAGAGGAGGGACAAAGCAACTGTATCAATGAGAATACAGACTTGAAACTGAGTTTAACCCTATGCTTTCTGACGTGGAAGTCAGTGTGTTTATGATCAAATGCAATGTGAATGACTGCAATGCTCTACAGTTGGATGTTATGAGTAACAGTGCAATGCAGAAGTCTTCAGAGCAACAATGCCTATGGGTTGTTATTGTGTAAGAGATATCGATAGGGTATTGTGTAAAATATTTTTGATAGAGTATTCTGGTTACACTCATAGCCAGGTGGCGGCTGCCTGTTAAGAGGGTCaaaaacaatgtaacaatgtaacaatgccACAATGTTACCATGTATTGATTTATTTGACATTGACACAATTAACTAATGTATTGCCATTATTTAAGTTGAACAGAATAATATATAACAGTGAAATGCATTGTTGAATAGAATGTTAAACTTATTTGAATAAATGATTGAACTGAAA

Function

NR:

description
growth arrest and DNA damage-inducible protein GADD45 beta-like

GO:

id name namespace
GO:0001756 somitogenesis biological_process
GO:0051726 regulation of cell cycle biological_process
GO:0006950 response to stress biological_process
GO:0046686 response to cadmium ion biological_process
GO:0051597 response to methylmercury biological_process
GO:0005634 nucleus cellular_component

KEGG:

id description
K04402 GADD45; growth arrest and DNA-damage-inducible protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603472.2 True 1524 mRNA 0.46 4 57348970 57351000

Neighbor

gene id symbol gene type direction distance location
apc2 apc2 coding downstream 234105 57078575 ~ 57114865 (-)
LOC110524110 LOC106613600 coding downstream 333030 57011622 ~ 57015940 (-)
LOC110524111 LOC106613601 coding downstream 337569 57007649 ~ 57011401 (-)
LOC110524108 LOC106613596 coding downstream 346946 56985006 ~ 57002024 (-)
LOC110524107 LOC106613595 coding downstream 375582 56963978 ~ 56973388 (-)
LOC110524122 LOC106613611 coding upstream 93176 57444176 ~ 57459501 (-)
LOC110524123 LOC106613612 coding upstream 109164 57460164 ~ 57537912 (-)
plppr3b LOC106613613 coding upstream 235885 57586885 ~ 57605528 (-)
LOC110524128 LOC107602773 coding upstream 261040 57612040 ~ 57627128 (-)
grin3bb LOC106613616 coding upstream 290220 57641220 ~ 57750792 (-)
G419125 NA non-coding downstream 5040 57343614 ~ 57343930 (-)
G419117 NA non-coding downstream 13399 57335370 ~ 57335571 (-)
G419116 NA non-coding downstream 14011 57334622 ~ 57334959 (-)
G419056 NA non-coding downstream 94215 57246557 ~ 57254755 (-)
G419039 NA non-coding downstream 98416 57212400 ~ 57250554 (-)
G419140 NA non-coding upstream 2948 57353948 ~ 57354150 (-)
G419143 NA non-coding upstream 7328 57358328 ~ 57358619 (-)
G419144 NA non-coding upstream 8854 57359854 ~ 57360178 (-)
G419145 LOC106613607 non-coding upstream 9356 57360356 ~ 57361105 (-)
G419147 NA non-coding upstream 11007 57362007 ~ 57362528 (-)
G418830 NA other downstream 514375 56834026 ~ 56834595 (-)
LOC110522975 LOC106613586 other downstream 637586 56703896 ~ 56711499 (-)
G417527 NA other downstream 1739240 55608835 ~ 55609730 (-)
LOC110524071 LOC106613554 other downstream 2188703 55123617 ~ 55181458 (-)
G416110 NA other downstream 2962742 54363286 ~ 54392411 (-)
G419603 NA other upstream 260059 57611059 ~ 57611567 (-)
G419714 NA other upstream 348745 57699745 ~ 57705936 (-)
G420193 NA other upstream 761387 58112387 ~ 58114060 (-)
G420421 NA other upstream 1062128 58413128 ~ 58414143 (-)

Expression


Co-expression Network