LOC118964626 (LOC106595063)


Basic Information

Item Value
gene id LOC118964626
gene name LOC106595063
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57841922 ~ 57851518 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005051768.1
gtgtGGGAGAAATTAGGTACATATATGGATAAATATACTGTCCTATATAAAAGAGGgatgcatttgccattctggtaaggtacattgtctattgtataggacaggaagccagagtGGGGCCATGGGAGAGGGCAACACCTAGGGCAGCTGGACATACAAAGGTCAGAGGTTATCtaaggagggggtcagccaaagGACCAATTGATGGATTACAGACATCAATCACATCACAGGAGACAAGTCTGTTTGATCTTAGACAACCATATGAAAAGAAGGCGACCAGAACAGCTAGGCACCATAAAGCTAAAGGAGATGAAAGACACCAAAAGGGACACATGGAGTTAATTACAGGGTATGAACACAGGCCACAGGAAAGGGGAATGTATAGTATTTTTAGTATAGCTGAGCATGCTAAAAAcagaagagacacatagtctgcTGACCCTAGATAACACACAAACAGGAGAACGCATTAAGCTGAGTGAAGGGTCAAAGCAAGGGTCTTGTCACCATTAGGATCTAATGGAAAGCAGATGGGGGCGTTATTGGGCTGAACAAGCAGGAAGCACGGATTGGGATGTAACTTAATTTGCATATGGGAGGGACTTATATGGTAGGTGTATAACTCAGAGCGAGggctctgaaaaagtgtgtgttccgcggaccgctCCGGCTTATGATACTGTTGTATTAAAAGTCTATATTGATTTTCACAAAGTTCTTGGTTGTGTCATATTTGAACCGATTTGCCACTACATAATTGGCGAGCTTGCCAGGAGAATTAGGGACTGAATAACGTTCTTGGCTGGCAGCGGGATCTTTGGACGATCTGGGCAAACAAGGGTGGCCACCCAGCTAAGGTAAGACAACAGTGAAATGTTTGCGTAGATCGCTTCAGAGATCCTGCCTCAGCAAGAGGAGCGTcaagtaggtctctctctctcaaatttccTAAAAACTATAGAAACGAAATAACTTTTTGAAATTCAATGAatttgcatgcatgtgtgtaagCTTGGAAATTGTATAATGAATGTGCATGCATGTCTAGTGAGTAAGTAGGTGGGGGCTGTGAACTTCGCTGGTGTAGGGTGTGTTATTCTGGCATGTTGGGGCTGGGATTGGGCACAGGGTTACAGCTATCTGCTTATAAGGTTTGAATAAAATAAGTAGTTATAGAAGTCCTGCGATACCGCTTCAAAATATTTACCAGAAGGTCTGaatgggtaggttactttattgATAAGTAATCCTGCGATACCGCTTCAAAATATTTAGCTGAAGGACTGAATGGGTAGGCTACTTTATTGATAAGTAGATAGATAAACATTCATGGCTACCGCTTCAAGCAAAAGGTCTGTACGGATGAGTAtttagaaaataaatacacatgGCTACCGCTTTGAAATGAAGGTCTGTACGGGTGAATATTTAAAACACAGAAAGAACGCTGGCCTGATTGTGCGACGTTCAACTGAAAAAGGAAATCCTGCGAATATAAAACGCTCCGTCTAGCTAAACGGGGGTTTATAAATCAGTAGGTCGCGCCACGATATTGCTCTAACGTAGAATAAAGATCAATACGGGGTGGATGAATAGGATATGAAGACAAGCTGATCCGATTAGACAGTAGTCTCGTCATGTCGTAAAAATCCTATTGGATTATACCAGTTTATGTAGAGGAAGTGTATTAAACTAGGGGATAAACTATAGGTCGTTTTTAGGTAAAAACGAAGAGTATGCATGAAAAATCCTATAGGATAATACCAGCTTATGTAGAGGAAGTGAATTAAGTTAGGTAATAAACTGTTTTGTTTTTAGGTAAAGACAAAAGGATTGAATGAATGCTGTAATATAATTATTTGTGCTGAATGAGCAGAttagaaagaagaggaagaacaggctgtgtgtctgtgaccaactgggaatgCGCAGGCCTCTCTGACAGTTAACTAAGTGTAATTTGAGAAAGAGAGCGCATTTAACTCTCACTGGGAAGAGGAACGAAATCGATAAATATTGGGCAAGATAAGTTATACATAAGCATAAAACATTGACTGGATAATGAGTTAAAAGACCATTGTAAAAATTACAATAGGTGTTAAAAAGAGGTATTAAACAAGGCATGGATAGTATAAAACGGATGCGAAGTAGGAAGAAATAACTTAAAAATATACAGATAAACTAAAATATACTGGTTAAAATAAATCTAGGCAAAAGTGAGAATTGCATGAAAATAGAAGTCTAGAACACATTAAAAATATCACGAGCCCTGTAAACGAAATAGGAGGCTGCAATTTAAAAATAGCCTCAGGAATTAAACAGTAAAATAGGCTAAGAGAGAATATAGCAAGCGGATAAATAAAGAGATAAGAAAGTGCAGACATTATAAATAAGCTGAATTAGAAGGAAAATTATATGAAATAGGATTTAATACATTGAATAAAGTTAAAGTAATAGTATAAGCAAAGATAAAAACACAGTGATATTTGAGGTGCTGTACTAGAATAAGACATTAAGGCTTCTGTAGTATTCAGTAATACAGTTGTAGACATTATAGAGTAGGTTTTAATAGGAGGTATTAAGTGATGTGactaataaattattatttgagAAAGTAGGGTAGATCTACCTTGGAAAATAGTAAATAAAGTATATAATGCGATGGGAGAGTTTAGGAAAAATAAATAGTGGCATGGAAACAAATGGACTGTTTCTCCCTGGAATATAGAGATAGCGAAATTTAATAAAGCCATAGAGTCGCTGAAAGAAGCGCACGTTAATTCTACCAATTCGATTTGAATATGAAGGAGCGGTTTGCTACAATGTAGGGCAACATTACCCGGTAAAcaggataaataaaataatgaattggAACGATCACATACAACCATAACAAGAAGCTTAACTTACCAGCGTTTTAATGTTAATTAACATTATATCATCAGAAATACATTACGATGGGGGAAGTGTAAGAAGTTGTAGAGCAGGGCTAACTAGTGTGGGGGAAAATTAGTGTAAGATGACACTGGAATGCGATAGTAGAGAATGCAGAAATACAGGAATTTACACCCGTTTTAAAAGAACAACAACTGATCGTTCTAAGGTTAGTACGAATGAAGTTTTCACCAAGCGGTGTATAGTCTCTGATTGATCAAAAAGTGGTTCATAGAGAGTACAGTTTATGTGATGAAATACGTACTAGATCACGTTTTACCTAACTTATAGTAAGGTaccgatgtaatttacaaatagCCCCACTCGGAGTCGTTTTGCATTAAAATGGCGGTTTCAGTGGTGATAAAATGCGTGGAGAAGTTGTTATTAGCGTCAAAATACGGAAAATAAACGTATATGAAAAATCACAAGCGTGGTAAAAATAGTTAGAAGAAAAGCAAATTGTAGAGTATGGGTGTATTCAATTTCTAAGGGTAGGATACAGATGGCCGAGCAGGGGGGAATTGTGCGTTCTGTGCATGGCTGGAGCTTTTATCGCATGCTCGGGATAAGTGAGGGGATTTTAGTATGTGTGTTACTGTTGGCTTGCTGATTTAGAGGGTGGCATGGTGAATGTTAACGAAATGTACATTTCTTTTCCAGAAAAAAGGGGTTACATTTTCAATGGGTTTTTCAGTTCGGTTTCAAATTGGGTATGCAGAAGGATGGAAGTGCTTTTGAAAGTGTGGTTAAGATGTTTCTAAAGAAAAAAGAGTGAAAACATTATAATGGTGTCGAATGCCCTGAACTCTAAGAATTTCCCGTGAAGACTGATCAACTTCACTAGAAATTTTTGGAATAGGTGGGATTTAATTATAAAATGATTGAGAAACACCAGTTTCTGTTCAAAGTGTAGAATCACTTTGAAATTCCATTATTTCCTTGGGAAAAAGATGAAGAGTTGTAATCTTGAATTGACTAGTTATTCAAAtaggtttatttttatttaacatggGGTTATAGGAGAACATATCAGTTCCCTGGGGTTATGGTCTTTGGGTAAATACAAAATGTGCTTTGTTCATTCTACATATAAAATGGAAATATATGTAAACAAGGGATAACAGTTACTCCAAATAGGTTATTGGAGTGGGGGTTTCTGCAAGGGTTATGATGATAACTACATAATCTGTAACTCATCTGAGAGATCGCCAGTAGAATAAGGGAGTTATCATGGAAATGTAATGTCAGAATGCATTCATGCTTGGGAGAGACTATCATAACACCAAGTGGGTGTGAAATTTATAAACAACATTTAGTTATGTTTTGGTTATAGGACTGTTTAAATTTATTAGGCCTAGGGAAGCTCTGGAAACTAATCCTGAGACAGGGTGATTGACAGAATTTACAGAATATTAAATTAAAGGTTTTTGTTTCTTTTATTTTACAATATCATAGTAATTGGAGTGATACATTGGAATGACATAAGTAATTGAATAAAAAGTATAGTCTGTTGTGTGATAACACCCAAGGATGAAGAAGACATTACAAGAAGACATTACAAATAGTGGTAATTTATTGCAAATATGCAGTTATTATAATTTACTTTACCATTTTTCTTGTTTGgtcaatttatttttgttttgaggAAAATAAGAGTGTATATTTTTCCTGAGGAGGGACTGATATATATTGACTAAAAATGATTTGAGAATGTTTAAGTATGTATCAAACTATGGAAGGAAATTAGGAGTAGTGACttatgtgttatgggttagaaaaACTGTAACTACATTGGGGGCTCATATATGAAGGTTATGGTAACAAGAGGGGGGTGTTATTTCTAGAAACAGTGTATATTGATAGACAAGATAATTCACAGAAAAGGAaggacagttggttttgtaaaaATATAGGGACAATTCTAAAAGTAAATAGAACATTACACATACCTAGATTATGGTAAAAGTGATAAGTAGTGGCATTTTGAACACTAGAGCAAAAGTTTAAGAAGCTTAGGATTTAGTTTTGTTAGGATTGGATATTCTTTCAACTGGAAGACACTTGACTGATTACATGTTATTCTTGCAGCAGTTACGGTAGGGACCATAATTTGGCTATCATTATGAATATTTTTGTGGCAAGAGGCCAGGTATTTAAGACAGaatgtttacatagggctgttatTTAAAAATTAAGATTTAGTGATCTTGCTCTAAGAAGAAAGTCTTTTGTCAGGAAATAACCCATGAGTTAGTATGTATGTTCCCAGGAAAAGACGCCAGATGGAAGGGCATGGGCTGAATTCTGGAAACTGAGTGTACATCAAGATACACCGGGCTGGGGATATACTTCTTACAGCACCTGCAGTGGTAAAGATTGTCATGTCTCTCTATGATGGGTGCATAAGTTTCACAAGAAGTAAGGTCCAGCTGAATAATGGGTGAGCTTGAAAACACCATGACAGAGGACgtgaaacaaaacaaaagagagagagagagactagattctactgtagacatactgggttgagtttgggggttatttgttttatttgataatGTATCATGTGAATAAGGATATATGTTAGGGTAGTTGTACTCTAAACCACATGTTGAAGGCTCAATGTGGAAGCTCATTCCGTGTTGAATTACTTTAAGAAGGAATAATGTTGATTAAGGTTATGCACATGTTTATCAGTTGAAACAGAGCAGATGGGGAACTAAGTAAAAAATGACATGGTTTGGGAACACCTCTCAGAACCTGCGGCCGAAAGGGGAAGACTGGATGAAAGCACGAGGAAGCCAATTAGGGCCTCCATTTTTGTGGAGTCCAGCAGAAAAGTATCCTGGAGGCATAgagtcagTCTTATGTTTAGGAAACCAGATGGAGAAGGGTTCTCCAGCTTCAGCTGGAATGTCAGTTTGTGTGATGAGTGATGGAAGTAAGAGAATGTATGGTGTAATCATAGAACAGAGGCCATAAGTCTCTAAGTATGAATGCCCCATAGAAAGAAGGCAGAAATCTGAACCAGGATGAGAGGTTCCACATCTGATGATCCAAGGGGACCAGAAGGATCTCTCCCAGTGATACCAGGAGATCGAGTCTACGTTTGAGTGTTCCGAAGGAAGTGGGATCAGCCGAGGAGGGAAGGACCCTACGAGGTGGCAACAGCCACAAACACGGCCGTCCAAGTGAAAGGAAGCAAGACGTGGTATCATCTAAACCACTGCACCCGAGTCCCGACGGAGAGAAGGACACAACCATACAGAGATGAGGACACAGAGGATGCTGATTCACCAGAAGGGACCCCGGAGGGAGCAGGAGCAGCGGAATCGATCAAAGCGCCGGGGAGGAATCAAGAAAATGGCAGACCAGATACAACGAGTGCATCGGCTAACATACTCAGAAGAACGAACCAGGGAAAAAGAGCCTGAAAAGAAAAGAGACAAACAACCAAAGTTTCCTCCAGTATGGCCAGAAAGCCCAGAAGTGGGAGGGGGTAACATGTCTGCCACTCCTGATGATATACTTGTTGGGGCAGACTCTGTTGACGGAAGCCTTCTACAGTGGGACCCCGAGGTATCGCCTAAAGAATGTGAACATCTCTTCCCTGAAATGGTCACCTTCCAGATGGAAGCACAGTCCGGCCTGAGGAGGGAGCCTCAGgggaagacagaggaggagaggcctcacaGGAACAGAAGGAGAGACCCCGCAAAGAGGAGGAAAAGTCCAGCAAGCTGAAGAAAATGGGGATTTCCCCAAAATTGACTTTTCAGCTCTTGAATTGTCTCCTTAACAGACACTTGAAGTTAGAGCCACAGAAGAACAATGATATTGACATAACAGAAGTAACAGTGAACGCTAGTATAGCAACAACAGACTCACGCACAATCAAGATGTAGGGTggaaacaggaagagaagagaggaaccaGTCAAACAATCTAAAAAGACTGACAAGGTTAGAATCTCTGTCCCACCTCAACATATAACTGAAACAGAAGAAGAGAAGACAAAAGGATCAAACCCTTACCGGAGATTGCATTCGGTGGATGGACATATCATCGAACGAAGAGAGAAGTTATTTGGGACTCAAAAGGATGTGACCTGACGTTAACCAAAGAAGTAGACGAGTGGGTGCTCACCATGAATCAGATTGAACCAGTTGAAGGTGAAGAATTAATAGGTGAAATAATGAGAACAAGATTGGCTGAAGGGAGTAGTTCCTCAGTCATTCAGAATTGGTCTTACGCCAATACCTAAACAGGAAGAGCCTGCGGTAGCTAGAAAGCATCAGAACCAGGAGggttctttactgacattttgaaCTTTTTGACTAACTTTAATGACCTACCTCAAGATAAGAACATTGCAAAgatgacagacacagacataccaGACTCTGAACCACTCAAGGACACCACATGAAATGAATAGTGAAGAATGAGTGGTACGATTAGGCTAAGTATACAGCAGAAATAAACATAGGAGGGACAATTGTATTTTGTGTAGAAAATCACCTTTGTCTGATCTTTTGATAGTACCTGAACCTGCATCATTTGAAGAATGcgttaaatgtaaaatgttcaatATTCAGAGAAAATACTACATTCCCTTGTGTGACATAGAATGTAGGATTGCTCGAGGGAGCACTAGAGGCAGAACCATATTAAATTAGACTGGGTTGGGAGTTCAAGGCAAGAGATGAAGTTAAATCTGGATTTGAATCTTAATTTTTGTGGATAACATCAAATAAGAACTTAGAGTGGATTAATTACATATACTATAACCAACAGAGATTCATTAACTATACTGACTCGGCTTTAACGGCGTTGGGGGAATAGGTACAGGATACCAGTAAAATGTCTTGCCAAAATAGACAGGCTCTCAATTGGCTTTTTGCAGAGAAGGGTGGAGTTTGTTATGTTCGGGGATGATTGTTGCACCTTTATTCCCAATAACACTGCGCCTAATGGATCCCTTGCAATCGCTATGGCTAAACTTAAAGGGTTAAGAAAAGAGGTTAAGAAAAATGCTGGGGTGGACTCTCATGTTTGGGATTGGTTGGACTTAGCATTGGGGAAATAGGGAGCCATGTTTGCTAGGACGGCCTTTATGCTGGAAGGGGGGTTATTGGCTCTGGGTATTGTATTTTGTTGTGTTTTACCCTGGGTGAAATCACTTGTGATCCAGACAACGGTTAAACAGATGTTTGTAAGTAGAGCTGACACTCCGGTGATAGTTGATCCTGTGCCGGGTAGGCCAGGCCACTATACTGATGAAAATGGACAGTTATGCTGTCATTCCAAATTCATAAGAAAGTCAACTGATGCATATCCACAAAAAGGGTCATTTCCGTAGTAAGTACAAGAGGTGTTATGTAAGGTCTACTTTTGCTCACGGCCTTGTGTTTTAGTAtgttttataaaatgtttttataGGTATATCAATGAATATATCTGGTTTCTTTTAATTAAAAGTTAGTTTTGCCTTCTAAAATGCTAGGTTATATTTAAAAACATGTAGGTAACAGTGGGATATCCCAGTTACAAGTGTCTACGGACCATGTCCTTAATCTTCTAACAGAAGTTGGTATTGATGGTATCACGGTTGTTGGAGAGGTGTCTGAGAGGGAGAATCATGTGGAAAGCTTAAATGTAGAATGATGTGTCAATTTTATTTTGTAACTGCATGGAGGCCTAGTGTTTTCTCATATTCAATTTATTATTTGACTCATtgctttattatatatatatttttctttttcGCGTAGCTGAGAACCTCAGACAAGGTTATGTATTTACATGCTCATGCTTTAACAAAagataatgtattattttttgtttctATACCGAACTAGATATTTTACTCTTATGAAAAACTAGAGATGTTTGGTGTAGGTGATTAGgaagttttattttttaattattttttattttttatttaaaaatatttttttttgataATCGACTGTTGATATTATGTTCCATATATGTCCTTTAAGTTTTTGGTGCTTATTAAAGCACCAGAGGGGGGTTATGTGGGAGAAATTAGGTACATATATGGATAAATATACTGTCCTATATAAAAGAGGgatgcatttgccattctggtaaggtacattgtctattgtataggacaggaagccagagtGGGGCCATGGGAGAGGGCAACACCTAGGGCAGCTGGACATACAAAGGTCAGAGGTTATCtaaggagggggtcagccaaagGACCAATTGATGGATTACAGACATCAATCACATCACAGGAGACAAGTCTGTTTGATCTTAGACAACCATATGAAAAGAAGGCGACCAGAACAGCTAGGCACCATAAAGCTAAAGGAGATGAAAGACACCAAAAGGGACACATGGAGTTAATTACAGGGTATGAACACAGGCCACAGGAAAGGGGAATGTATAGTATTTTTAGTATAGCTGAGCATGCTAAAAAcagaagagacacatagtctgcTGACCCTAGATAACACACAAACAGGAGAACGCATTAAGCTGAGTGAAGGGTCAAAGCAAGGGTCTTG

Function

NR:

description
uncharacterized protein LOC110494027 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005051768.1 True 9485 mRNA 0.39 2 57841922 57851518

Neighbor

gene id symbol gene type direction distance location
tmem259 LOC106613615 coding upstream 200811 57627305 ~ 57641111 (+)
LOC110524121 LOC106613609 coding upstream 414599 57380097 ~ 57427323 (+)
LOC110524119 LOC106613607 coding upstream 474295 57352343 ~ 57367627 (+)
LOC110524118 NA coding upstream 577469 57200756 ~ 57264453 (+)
diras1a LOC106613605 coding upstream 708261 57116340 ~ 57133661 (+)
LOC110524134 NA coding downstream 23287 57874805 ~ 57906660 (+)
sid1 NA coding downstream 50584 57902102 ~ 57903229 (+)
LOC110524136 LOC100136537 coding downstream 177243 58028761 ~ 58030894 (+)
LOC110522977 NA coding downstream 233203 58084721 ~ 58086269 (+)
LOC110524139 lsm4 coding downstream 268547 58120065 ~ 58124398 (+)
G419380 NA non-coding upstream 67984 57771648 ~ 57773938 (+)
G419357 NA non-coding upstream 107392 57734199 ~ 57734530 (+)
G419345 NA non-coding upstream 129296 57712414 ~ 57712626 (+)
G419338 NA non-coding upstream 141883 57699765 ~ 57700039 (+)
G419326 NA non-coding upstream 153852 57687831 ~ 57688070 (+)
G419448 NA non-coding downstream 12280 57863798 ~ 57864930 (+)
G419449 NA non-coding downstream 13688 57865206 ~ 57884145 (+)
G419459 NA non-coding downstream 45878 57897396 ~ 57900379 (+)
G419901 NA non-coding downstream 134178 57985696 ~ 57985937 (+)
G419927 NA non-coding downstream 181917 58033435 ~ 58035576 (+)
LOC100135807 LOC106613594 other upstream 883757 56943838 ~ 56958165 (+)
G418251 rtca other upstream 916746 56923924 ~ 56925176 (+)
G418119 LOC106613588 other upstream 1112101 56726185 ~ 56729821 (+)
G418077 LOC106613582 other upstream 1213305 56617890 ~ 56628617 (+)
G419452 NA other downstream 32862 57884380 ~ 57899648 (+)
G420117 LOC100846954 other downstream 561605 58411240 ~ 58418268 (+)
G420634 NA other downstream 1091210 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 2842739 60694220 ~ 60695905 (+)
G423922 NA other downstream 3870019 61721537 ~ 61722024 (+)

Expression


Co-expression Network