LOC110524135 (arrdc2)


Basic Information

Item Value
gene id LOC110524135
gene name arrdc2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 57989745 ~ 57998440 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603491.2
TCATCATGTTTGCTCTCTAAGAAAATCAATTTTGCAAACTGCATGTTCGGTTTCTTGGAACTAATGCATAGACCGCATGTACAGGATGTTAAAAATGGACCCGAGCTAAAGCGAATATAAATACCTTTGCACAATAGTACAATGTGAAACTAAATGGGAGGATCTTTGCTGTCTCCAGGCATGCTCAGTTAAGTCTGTTTTTGTCTAAGAACCTGTAACCATCAATCACCAGGCACTGTTTTCTCTGTTCGCTCTGAGCACTCCACGCCCAGGGAATATGTTTATTAGCCTGCTACAGTCTATGCATGGCACCTTATGTAATATATTCGGAGGTCCCGCCCCCTTTCACATCGTGCAAAAAGGAGCTGTGGCCGTCTCTGCTGCATCAGTTTTGTGTAGCGACAAGCCAGAGAGACAACTGAAACGCTCTACGCTTTTTGACAACTTGAACAAGAGCGCAAGAACATTTTAACAAAAGTAATCCATTTGGAATTAACACGCCTCAAGATGATTTTCGGCAAATTGAAAAAGTTTGACATCGTCTTTGACTCTCCAGAAATCGACTCTCCTCCAGTTTTCAGCAGTGGGGACGTGGTGTCTGGAAAAGTTGTTTTGGACCTTGCAGGGGAATGTAAAGTGGAGTCGTTGAAGTTGCACGCCGAAGGTTTTGCTAAAGTGTATTGGACCGAGTCTCGTTCGGCTGGGTCTAGTACTGCTTATACTCAAAACTACAGCGACGAAGTGGAATACCTCAACCGAAGAGAAGTGCTTTTGCAAGCAGATAATGCCGAGCTTATCCTCCTCCCTGCTGGAAGACATGAATTTCCATTTAGTTTCCAGTTGCCTGACGAGACACTGGTAACATCTTTCGAAGGCAAGCATGGCAGCGTCCGCTACTGGGTGAAGGTGAAGCTGCATAGGCCCTGGGCTACAGTGAGGAAGATCAAGAAGGAGTTCACAGTCATTGAGCCCATTGACATCAACACACCGGCCTTATTGGCCCCCCAAGCTGGCAGCAAAGACAAGATGGCACGGGTTTGGTACCACAACTTTGGACAGGTGTCGATAACTGCCAAGATTGACCGTAAAGGTTACACACCAGGTGAGGTGATTCCGGTCTTTGCTGAGTTTGACAATGCCACCTCACGCTCTGTGGTGCCCAAGGCCTACATCACACAGACGCAGACGTTCCTCGCCCGGGGCACCATGAAGCAGAAGCAGGCTGTGGTGGCCACGCTTAGTGGCGACGTGGTGGGGGCCCAGCGCAGGGAGACCTGGCATGGCCGCGCCATCAAGATCCCACCAGTCGGGCCCTCCATCCTGCAGTGCCGCATCATCAAAGTGGAATACATGCTCAGGGTATGTGTGGATGTTCCTGGGACCTCTAAGTTGTGCCTAGAGCTGCCGCTGGTGATGGGCACCATCCCCCTGCATCCCTTCGGCAGCCGCACCTCTAGCGTCAGCAGCCAGTACAGTGTCAACCTGGAATGGCTCCGCATGGCCATCCCTGAGCAGCCTGAGCCTCCTCCTGACTACAGCTCTGTGGTGACTGATGAGGAGGCTGAGCAGAACACTATGGCCCACCGTCCTGAGGAGGACCTCAGTGGGATCATGGAGCACCCACTTAGGGCCTTTGTCCAGGAGTTCCGCTTCCGACCCCCTCCGGTGTACTGCGAGGTCGACCCAAACCCTCAGCCCCTCAACATGAGACGTCGCTGCATGACGTGTTGAACCAACCACTTGAGTGTCACGCGATGACCCGACTTAATTACGCAAAGTGATTTGTCTTCTCCTGGATTACTATCCGAAACTGGCTACCCAGTCCCAAGATGTGGCTTCTGTTGTTGGTAGGGACTAAGAGTACCGCTGAGAAGGTGGAAGAGGAGATGGAGACGACAGGACCTGGTTGTGGAGGAAGCCcttttaaaaaaagaaagatgGACATGTTATGTTGAGCAAGGAAAGGAAATAACTTGTCCCATGGTTCCTGTCCTCCAAAGTGATTTTGGCTCTGGATGAGGAAACAGAGCCCCTCCTGCCAATCAATGATTCCcacacaataaatgttttgtgttttttactGAATTTGGGGAAATATTGGGGGAGAATCACTTGATTTTTGTAAGGGGGAGAGTTGAAGTTGCAGATGATACCTAAGCCTTAAAGAATGCTATGTGATATGACGAAGTAATCAGCTGGTTTAATGTTGAGGCATCTGTAATACTCAACTCCCCTTTGCCTTGTAACATATAGCCTAGATGTCGACCTGTGTTATGTATTATGACTCAATCATGATTTTCCCATGACTATTTCTACTGATAGTCAAGTAAATGAGATTCAAGTAAGCACTTTTTCTGAGAAGTCATGGTTTGGTGAAGAGGAGTTGAGTCAGCAGGTTTAGATATTAAGCCGATGTACACAGGTAATGCTATGCAAAAGGGAAAGCCTGCAGTATCTGCAAATGAACTGAAATGATTGCATGAGTGATTCTGATGCAGCAGCTATCCTCTGTATGGCACTGTTCAATGTATTCTGAATGTTAATATAACAGTACTGGATGAAGAAACTAAGTTAATTTCTTTGTATGTGGATGAATTCAAGAGGAATTGGGGTTGCGTACAAGCTAGTTCTTTAGCACAAACCTATGCATAGTGTCTTCTCAAATAGAGACTAGTACTGATGTATTATGACCGTTCACAACAATGATAAGAGGAAGAAACGTGTGAGTCTGTTTCGAAGCTGCTTCAGGCTCAAATGATTAGTTTTAGAAGCAGCTAAAGAGGAAATGTCTGAGCTGTGTGGTTTGTGCGTTTGTGTCAACCCAGATGCCTGTGCCTTGATGTTTCTGAACAGTTTATACATGTCTGCAGAACATTTGTTCAGTGTTACATTAAGCCGTACGTTGAGGATGTCACTTTGAAGTGTACTAAAGAACATTCCAAGAAATTACTGAGGACTTTTACCTCATTTCCAAATAATGGAGAGAATGGGGGCTTCAGGTCAGCAATGCAGCTTTGGTGTCATGCTCAGTGCAGCACACACCTTAAACGGAATGTATTTTATACAAATGCCATTTTTGATTCACAGAACTTGCCAAAGTTTTTGTAATTATTGTTTctaataaaacactgacagtt
>XM_021603492.2
AAACAGTGGTCGCTTTCTGGCCACACACGAGTGGACGGCGTGAGTCGCATGTGCTTTTTTCTCATTTGTGTATGTTAAAGAAACCCATTCGTACTTGAGCATATAAATTATGTGGTAGAAACATTGTAACAATATAAATATTACAGTGAAGAACTCAAATACACCATCTCATTTTTTGAAGAATGACTTTCAAGACAATTAAACGTTTTAAACTGGAGTTGGACGACCCGGACGATGCTGTGTATGCCAGCGGCGAGATAGTGTCAGGACATGTCGTTTTAGAGCTCAACAGGGAGACGAAAGTGCACTCCATGAAGGTCATTGGAAGAGGGGTTGCCACTGCCCACTGGCTTGAGGATCACAGTGTGGGCATGAATGCAGTTTACAACGACTACACCTCCAAGATCACCTACTTTAGGAAGAGACAACATCTCATCCGAGATAATGCCGAGCTTATCCTCCTCCCTGCTGGAAGACATGAATTTCCATTTAGTTTCCAGTTGCCTGACGAGACACTGGTAACATCTTTCGAAGGCAAGCATGGCAGCGTCCGCTACTGGGTGAAGGTGAAGCTGCATAGGCCCTGGGCTACAGTGAGGAAGATCAAGAAGGAGTTCACAGTCATTGAGCCCATTGACATCAACACACCGGCCTTATTGGCCCCCCAAGCTGGCAGCAAAGACAAGATGGCACGGGTTTGGTACCACAACTTTGGACAGGTGTCGATAACTGCCAAGATTGACCGTAAAGGTTACACACCAGGTGAGGTGATTCCGGTCTTTGCTGAGTTTGACAATGCCACCTCACGCTCTGTGGTGCCCAAGGCCTACATCACACAGACGCAGACGTTCCTCGCCCGGGGCACCATGAAGCAGAAGCAGGCTGTGGTGGCCACGCTTAGTGGCGACGTGGTGGGGGCCCAGCGCAGGGAGACCTGGCATGGCCGCGCCATCAAGATCCCACCAGTCGGGCCCTCCATCCTGCAGTGCCGCATCATCAAAGTGGAATACATGCTCAGGGTATGTGTGGATGTTCCTGGGACCTCTAAGTTGTGCCTAGAGCTGCCGCTGGTGATGGGCACCATCCCCCTGCATCCCTTCGGCAGCCGCACCTCTAGCGTCAGCAGCCAGTACAGTGTCAACCTGGAATGGCTCCGCATGGCCATCCCTGAGCAGCCTGAGCCTCCTCCTGACTACAGCTCTGTGGTGACTGATGAGGAGGCTGAGCAGAACACTATGGCCCACCGTCCTGAGGAGGACCTCAGTGGGATCATGGAGCACCCACTTAGGGCCTTTGTCCAGGAGTTCCGCTTCCGACCCCCTCCGGTGTACTGCGAGGTCGACCCAAACCCTCAGCCCCTCAACATGAGACGTCGCTGCATGACGTGTTGAACCAACCACTTGAGTGTCACGCGATGACCCGACTTAATTACGCAAAGTGATTTGTCTTCTCCTGGATTACTATCCGAAACTGGCTACCCAGTCCCAAGATGTGGCTTCTGTTGTTGGTAGGGACTAAGAGTACCGCTGAGAAGGTGGAAGAGGAGATGGAGACGACAGGACCTGGTTGTGGAGGAAGCCcttttaaaaaaagaaagatgGACATGTTATGTTGAGCAAGGAAAGGAAATAACTTGTCCCATGGTTCCTGTCCTCCAAAGTGATTTTGGCTCTGGATGAGGAAACAGAGCCCCTCCTGCCAATCAATGATTCCcacacaataaatgttttgtgttttttactGAATTTGGGGAAATATTGGGGGAGAATCACTTGATTTTTGTAAGGGGGAGAGTTGAAGTTGCAGATGATACCTAAGCCTTAAAGAATGCTATGTGATATGACGAAGTAATCAGCTGGTTTAATGTTGAGGCATCTGTAATACTCAACTCCCCTTTGCCTTGTAACATATAGCCTAGATGTCGACCTGTGTTATGTATTATGACTCAATCATGATTTTCCCATGACTATTTCTACTGATAGTCAAGTAAATGAGATTCAAGTAAGCACTTTTTCTGAGAAGTCATGGTTTGGTGAAGAGGAGTTGAGTCAGCAGGTTTAGATATTAAGCCGATGTACACAGGTAATGCTATGCAAAAGGGAAAGCCTGCAGTATCTGCAAATGAACTGAAATGATTGCATGAGTGATTCTGATGCAGCAGCTATCCTCTGTATGGCACTGTTCAATGTATTCTGAATGTTAATATAACAGTACTGGATGAAGAAACTAAGTTAATTTCTTTGTATGTGGATGAATTCAAGAGGAATTGGGGTTGCGTACAAGCTAGTTCTTTAGCACAAACCTATGCATAGTGTCTTCTCAAATAGAGACTAGTACTGATGTATTATGACCGTTCACAACAATGATAAGAGGAAGAAACGTGTGAGTCTGTTTCGAAGCTGCTTCAGGCTCAAATGATTAGTTTTAGAAGCAGCTAAAGAGGAAATGTCTGAGCTGTGTGGTTTGTGCGTTTGTGTCAACCCAGATGCCTGTGCCTTGATGTTTCTGAACAGTTTATACATGTCTGCAGAACATTTGTTCAGTGTTACATTAAGCCGTACGTTGAGGATGTCACTTTGAAGTGTACTAAAGAACATTCCAAGAAATTACTGAGGACTTTTACCTCATTTCCAAATAATGGAGAGAATGGGGGCTTCAGGTCAGCAATGCAGCTTTGGTGTCATGCTCAGTGCAGCACACACCTTAAACGGAATGTATTTTATACAAATGCCATTTTTGATTCACAGAACTTGCCAAAGTTTTTGTAATTATTGTTTctaataaaacactgacagtt

Function

symbol description
arrdc2 Predicted to be involved in protein transport. Predicted to be active in cytoplasm and plasma membrane. Is expressed in basal plate midbrain region; blood vessel; nervous system; neural rod; and pronephric duct. Orthologous to human ARRDC2 (arrestin domain containing 2).

NR:

description
arrestin domain-containing protein 2-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603491.2 False 3137 mRNA 0.46 7 57989745 57994206
XM_021603492.2 True 2797 mRNA 0.47 8 57989745 57998440

Neighbor

gene id symbol gene type direction distance location
LOC110524132 LOC106613620 coding downstream 108031 57876328 ~ 57881714 (-)
LOC110524131 LOC106613618 coding downstream 114881 57866562 ~ 57874864 (-)
wdr18 LOC106613619 coding downstream 127286 57771636 ~ 57862459 (-)
grin3bb LOC106613616 coding downstream 238953 57641220 ~ 57750792 (-)
LOC110524128 LOC107602773 coding downstream 362617 57612040 ~ 57627128 (-)
LOC110522874 NA coding upstream 4144 58002584 ~ 58014660 (-)
homer3b LOC106613626 coding upstream 35232 58033672 ~ 58081875 (-)
LOC110524138 LOC106613627 coding upstream 93871 58090616 ~ 58109445 (-)
pgpi pgpi coding upstream 117358 58115798 ~ 58120039 (-)
LOC110524141 LOC106613631 coding upstream 165478 58163918 ~ 58187049 (-)
G419900 NA non-coding downstream 4193 57985224 ~ 57985552 (-)
G419834 NA non-coding downstream 56329 57900287 ~ 57933416 (-)
G419815 NA non-coding downstream 137808 57841853 ~ 57851937 (-)
G419736 NA non-coding downstream 263860 57725593 ~ 57725885 (-)
G419726 NA non-coding downstream 272992 57716535 ~ 57716753 (-)
G420184 NA non-coding upstream 23846 58022286 ~ 58022803 (-)
G420194 NA non-coding upstream 30531 58028971 ~ 58030854 (-)
G420179 NA non-coding upstream 33681 58032121 ~ 58083723 (-)
G420233 NA non-coding upstream 88503 58086943 ~ 58087264 (-)
G420192 NA non-coding upstream 91302 58089742 ~ 58090474 (-)
G419714 NA other downstream 283809 57699745 ~ 57705936 (-)
G419603 NA other downstream 378178 57611059 ~ 57611567 (-)
G418830 NA other downstream 1155150 56834026 ~ 56834595 (-)
LOC110522975 LOC106613586 other downstream 1278361 56703896 ~ 56711499 (-)
G420193 NA other upstream 113947 58112387 ~ 58114060 (-)
G420421 NA other upstream 414688 58413128 ~ 58414143 (-)
G420982 LOC106613655 other upstream 1027663 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 1134430 59131152 ~ 59138429 (-)
G422347 NA other upstream 2102325 60100765 ~ 60101056 (-)

Expression


Co-expression Network