LOC110522874


Basic Information

Item Value
gene id LOC110522874
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58002584 ~ 58014660 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473385.2
TGCGGACCTTGCACGTTGAGTGTGAAGTATTAAAGCAGTTAGGAAGTTTAAACACAAACCAGGGCCTCTGGATAATGTAGAGCAATGCTACACACTTTTGCATTGGTATCTGCACTGCACATAATATGAACAATTACCATTCCTTGGAAGCCCAATAACTTATTTGAAAGTGGATGGGTACAAGTGGATGGGTACAAGTGATTTATCATCACAAACCTGGGGCGTCCGACTGCACCCTCATGAAGGCTCAAGTCAAACCATTGTGGAGGGTGACGGAGGAATCACATCAGACATGGGTGGCTGTACACAGAGTCCTGGAGGTCAAGTGTCCTGTCGGCACAAGACAACAGCACTCTGGACGACTGGCTACAGAACAAGAGAGGGCATCTGGCAAATGCAACTTCTTTGAGGAAGAACCACTTCTCCAACACTCAGGCGCAGATGTTTGTAAAACAAGAACTGATTTCATCACGTGGACCCCCAAACAATGTATAATCGTCCGTGTCCTGTGAGCTGATGACTTCCTCACCAAGGCTCTGAACACAATGAACTGATTCTGGGCCAAGTATATCTACACCAAGATGGTTGGCACAGCCCATAGACAAGGAGACAGACTCCAGTCTACAGACAGTCCAGGGTGGAATACAGTgcagagaggaagaaggagaagcTGGTACATGAAGAAaagttaggaatacagtagttcaGTCGAAGGACTCAACCCATGTAATCGGTCTGgtgaaaaatgtatataaattAACTGTATTTAGATAGAAGTACATACACATAATACACAATAGTAAGTAATTTAAGTTAAAAAGTATACAATATAAAGTGCGTGGGTGCAAATAGCTAATGCAGTTGATGAGGAGTTGTCAGAGATATATGTCGACTGTACAAGACATTAAGAAAACGTGCCATGacatacactgaccaggtgaatgcaggtgaaagctatgctatcttattaatgtcacttgttaaatccaattaaatcagtgtagatgaagagaggagacaggttaagtgCCAAtgaagggggtatggtagtaggtgccaagtgcACCCTCggcagtttcctgtgtgtaccaagaatggtccaccacccaaagggcatcTTAGCCAACTTgtcacaactgtggaaagcattggagtcaacacatACCAATATGAATCCACCTCTTTAAGTCAGCCAAGATCTGAAAtcacaacaaaaaacaaacagccAAGATcagaaatgtttaaaaatattACCAGGACGATATACAGTCTGGGTGCCATCTCTTTGTGCTGTTTTGCAAACTCCTCTCATCAAAGAAACAATAGTTGTCGGAACAGCTTAAGAGTCCAGGCACCCAGGCATAGCCTACATAATACATACCTGACCGCCAGGATGATGATATTGTGGAGAGATAAAGTCACATCAGAAGTACGACCACCACAGCCTTTCGACAGGTACAGTATGTGATACTGCCAGCAGGAATAcaagctagaggtcgaccgattaatcggaatggccgattaattagggccgatttcaagttttcataacaatcggaaattggtaattttggacgccgatttaaaaaaatgttttgttacacct

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473385.2 True 1606 mRNA 0.43 4 58002584 58014660

Neighbor

gene id symbol gene type direction distance location
LOC110524135 arrdc2 coding downstream 4144 57989745 ~ 57998440 (-)
LOC110524132 LOC106613620 coding downstream 120870 57876328 ~ 57881714 (-)
LOC110524131 LOC106613618 coding downstream 127720 57866562 ~ 57874864 (-)
wdr18 LOC106613619 coding downstream 140125 57771636 ~ 57862459 (-)
grin3bb LOC106613616 coding downstream 251792 57641220 ~ 57750792 (-)
homer3b LOC106613626 coding upstream 19012 58033672 ~ 58081875 (-)
LOC110524138 LOC106613627 coding upstream 77651 58090616 ~ 58109445 (-)
pgpi pgpi coding upstream 101138 58115798 ~ 58120039 (-)
LOC110524141 LOC106613631 coding upstream 149258 58163918 ~ 58187049 (-)
LOC118964716 LOC106613467 coding upstream 362898 58377558 ~ 58380045 (-)
G419900 NA non-coding downstream 17032 57985224 ~ 57985552 (-)
G419834 NA non-coding downstream 69168 57900287 ~ 57933416 (-)
G419815 NA non-coding downstream 150647 57841853 ~ 57851937 (-)
G419736 NA non-coding downstream 276699 57725593 ~ 57725885 (-)
G419726 NA non-coding downstream 285831 57716535 ~ 57716753 (-)
G420184 NA non-coding upstream 7626 58022286 ~ 58022803 (-)
G420194 NA non-coding upstream 14311 58028971 ~ 58030854 (-)
G420179 NA non-coding upstream 17461 58032121 ~ 58083723 (-)
G420233 NA non-coding upstream 72283 58086943 ~ 58087264 (-)
G420192 NA non-coding upstream 75082 58089742 ~ 58090474 (-)
G419714 NA other downstream 296648 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 376410 57612040 ~ 57627128 (-)
G419603 NA other downstream 391017 57611059 ~ 57611567 (-)
G418830 NA other downstream 1167989 56834026 ~ 56834595 (-)
LOC110522975 LOC106613586 other downstream 1291200 56703896 ~ 56711499 (-)
G420193 NA other upstream 97727 58112387 ~ 58114060 (-)
G420421 NA other upstream 398468 58413128 ~ 58414143 (-)
G420982 LOC106613655 other upstream 1011443 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 1118210 59131152 ~ 59138429 (-)
G422347 NA other upstream 2086105 60100765 ~ 60101056 (-)

Expression


Co-expression Network