Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110524136 |
| gene name | LOC100136537 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 58028761 ~ 58030894 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| ubiquitin-60S ribosomal protein L40 |
| id | name | namespace |
|---|---|---|
| GO:0006412 | translation | biological_process |
| GO:0005840 | ribosome | cellular_component |
| GO:0003735 | structural constituent of ribosome | molecular_function |
| id | description |
|---|---|
| K02927 | RP-L40e, RPL40, UBA52; ubiquitin-large subunit ribosomal protein L40e |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036977954.1 | True | 697 | mRNA | 0.45 | 5 | 58028761 | 58030894 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110524134 | NA | coding | upstream | 122101 | 57874805 ~ 57906660 (+) |
| sid1 | NA | coding | upstream | 125532 | 57902102 ~ 57903229 (+) |
| LOC118964626 | LOC106595063 | coding | upstream | 177243 | 57841922 ~ 57851518 (+) |
| tmem259 | LOC106613615 | coding | upstream | 387650 | 57627305 ~ 57641111 (+) |
| LOC110524121 | LOC106613609 | coding | upstream | 601438 | 57380097 ~ 57427323 (+) |
| LOC110522977 | NA | coding | downstream | 53827 | 58084721 ~ 58086269 (+) |
| LOC110524139 | lsm4 | coding | downstream | 89171 | 58120065 ~ 58124398 (+) |
| LOC110524140 | LOC106613630 | coding | downstream | 127627 | 58158521 ~ 58160134 (+) |
| LOC110524142 | NA | coding | downstream | 168493 | 58199387 ~ 58205370 (+) |
| LOC110524143 | LOC106573897 | coding | downstream | 281438 | 58312332 ~ 58370090 (+) |
| G419901 | NA | non-coding | upstream | 42824 | 57985696 ~ 57985937 (+) |
| G419459 | NA | non-coding | upstream | 128382 | 57897396 ~ 57900379 (+) |
| G419449 | NA | non-coding | upstream | 144616 | 57865206 ~ 57884145 (+) |
| G419448 | NA | non-coding | upstream | 163831 | 57863798 ~ 57864930 (+) |
| G419380 | NA | non-coding | upstream | 254823 | 57771648 ~ 57773938 (+) |
| G419927 | NA | non-coding | downstream | 2541 | 58033435 ~ 58035576 (+) |
| G419971 | NA | non-coding | downstream | 55665 | 58086559 ~ 58086794 (+) |
| G419980 | NA | non-coding | downstream | 56772 | 58087666 ~ 58087897 (+) |
| G419979 | NA | non-coding | downstream | 58802 | 58089696 ~ 58089817 (+) |
| G419976 | NA | non-coding | downstream | 59099 | 58089993 ~ 58090475 (+) |
| G419452 | NA | other | upstream | 129113 | 57884380 ~ 57899648 (+) |
| LOC110524119 | LOC106613607 | other | upstream | 661424 | 57352343 ~ 57367627 (+) |
| LOC100135807 | LOC106613594 | other | upstream | 1070596 | 56943838 ~ 56958165 (+) |
| G418251 | rtca | other | upstream | 1103585 | 56923924 ~ 56925176 (+) |
| G418119 | LOC106613588 | other | upstream | 1298940 | 56726185 ~ 56729821 (+) |
| G420117 | LOC100846954 | other | downstream | 382229 | 58411240 ~ 58418268 (+) |
| G420634 | NA | other | downstream | 911834 | 58942728 ~ 58944217 (+) |
| LOC110524226 | LOC106573564 | other | downstream | 2663363 | 60694220 ~ 60695905 (+) |
| G423922 | NA | other | downstream | 3690643 | 61721537 ~ 61722024 (+) |
| G424079 | NA | other | downstream | 4074629 | 62105523 ~ 62105872 (+) |
