homer3b (LOC106613626)


Basic Information

Item Value
gene id homer3b
gene name LOC106613626
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58033672 ~ 58081875 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603494.2
GCAAGGACAATTCTTGAATGGGATACCGGAATGGGCAGAGCAGGGGGAAACAACAAACTGCAGAAGGATCTCATTACCGTGCGCTGACACTTAGCAGGGGCAGAACGCATTTATACTTTTGTAGAACATAGTTCCCTCATGTTTTTGAGAGGCGTTAAATCACAAGATTAGTGTGCCACCACAAAGGAAGAGCGACAAAGAGCGGGATTCGAAGGACAAAGGAAAGCTGTTTTAATTGATTTCAAACAACAGAACTACTACAATTGGGAAAACATTATATGTTTTCAAGTACATTTTTCCCCCACTGAACGTTTGCGGTATTCCTGTTAGAGAAATGTAATGCAACGTACTGTACAATTATAAAGGAATTCACTTTACAGTGACATTCGAGACAATTTGTTAACCATCTATTCGGAGACAAAGAGCAAGACATTACCTATCGCTTGAGATAAGACTGGAATTTATATTCTGCAAGGACACGGAAAGCGTTCAACAATATGGGAAAAGGAGCCTTCCCTGAGCTGTAAACATGTATCCGTCACACAGAGAAAGGGAACAACCCATCTTCAGTGCCAGAGCGCACGTCTTCCAGATAGACCCGGCCACCAAGAGGAACTGGCTTCCAGCCAGCAAGCATGCCGTCACTGTCTCCTTCTTCTACGATGCCAATCGGAGTGTGTACCGCATCATCAGTGTGGGGGGCACCAAGGCCATCATCAACAGCACCATCACCCCCAACATGACCTTCACCAAAACCTCCCAGAAGTTTGGCCAGTGGGCTGACAGCCGCGCCAACACCGTGTATGGCCTGGGCTTTGCCACTGAGCAACAGCTTCAGCAGTTTTCAGACCAGTTCAAGGAAGTGAAAGAAGCAGCGCGTCTTGCAAGGGAGAAATCACAGGAGAAATTTGAACTGACCAACCCTGCGCTGAATATCGCCGCCCCACAGCTCTCTCAGGACTTATCAGAGGACCGCCACTCGCCGCCGCTGCTGACTGTCAACGGACCCGAGGACAAGCTGTTCCGCAGCAAGAGCGCCGACATGGAGCAGCTGACGTCGGAGAAGGAGCGCATTAAGAAGATGCTGTCTGAAGGGTCCATATGTGAGATTAACCTGGAGGCAGAGCTGTTCACCCTGCAGGATAGCAACGCTAAGCTAGTGGCGGCGCTTCACGAGGCTAACACTGGCGTGGAAGAGTGGAAGAAACAGCTGGCTGAGTATCAGGAGGAGACTGGCAGGCTCCGAGATCAGGTGGCAGAGCTGGAGGCTCAGAGCGGGCGGCCTGATCCCAGTGAATCGGAGACGAGGGATGAGCTGACCCAGACGTTAGAGGAGTTGGAAGCCTTGCTCAAAGCTAAAGATGAGGAAATCCACAATCTACAGAGCAAGAATTCAGATATTCCTGatttagagaaagagagggaagaggcggTTCAGAGACTTCAGGATCTGGAGACACGGAATGCAGAACTTGAGCAACGGGTGGAGAAAGCCGAGCAGACTCTGGCTTCCTCTCTGGAGGAGCGGGATAGGGCGGAGAGTGAGGTTCAGCGGGTCATCGACGTCCTGGATGTCAAGATCTACGACCTGAATGACCTACGACAGAGCTTGGCCAAGCTCATCGACAAATAGAGCAACGCGATGACAGGATGGTAGAGGGCGGTGGACAAGGACGGAAAGGAAGCTAGCTCTTTTGGAACAATGTTTGCTTAAGCACATTATTACAGAGGTTAAGAGTAGAACCGTGGATCCACCCATTGCAGCGGTACATTGCTCCTACCCACCACCTTGAAAATAACAATCTAATATTTTTTCTTCGTCGCTGTGAGAATTGTTGAGTCGACGTTTACACCATTTATCTCAATGTTTTGTTGGGTTATGATTCAGTCAACCTGCTATTATAGAAGTTATCTTGAACTTTTAAAAGTAGTTGAATTGAATCTGGGCTTGTACTTAAAAATGTAGTTGCCAAATTATTGTTTCCGTTTGTCAGTATTAACAATTAATAATAATTTACTTCTGTTGTTTTATGTATTGTATTACATTAACAGATAACATAATTATTTGATCATCCTACAGAAATGTTGCTGCGGAGGGTTTATCACCAAGGGTACTCAATGACAAAACTTAATGAGCTCAGTGAAGAACCTTGCCAAGTACAGTAATGTGAGTTATGCGCATTACCCAATGTGCAACCTTTTACAAATAGATTTAAAAGCACAAGTAGTGTTATTAGTAAAGATGTACTGTACTTGATTCAATGCAAAAGCTAACCTGGTATCTCTACTTTCACTGATGCACACCATCGAGATTCTCTTCTGACCTAGGCATTGAGGCATTTTTTCATGGTATTATTTAGGTACAAATAAGGTTAAATCAGTGTTGAATTAGCAATACAGTTTTTTGACAAGCACTCTGTAGGTAATGTAATCTCACCTTGTTCATGTAGACAAACTGCAATTCTGTTGAACAATGACCACATTTACATACATTTCGGTTTGTAGCTCATATCCTGCTTAAGGTCTTATTCGGGATAagctgtttacatgcaccttTGATATCCCGCTCACAAGTATCCATGTGACTAAATAGTATATTCCTAATTTAAGTTcatatgggttaaatggaaaaGTAACTGAAATGTGGACACTGACTGTCggcctataacctctcacatgtaGAGTAATATAACATTAACTACTGCAGAATAATGCATTTCTTACTGTAAAATGGTACAACAAATGTTAATTTGTctcgggaacaggagtggagaaatatttttttctttcagcATCTATTGAGAAAATGTGAATACGTGTGTAACATGTTATATTTGACACTGTTTTGCAAGCAGACAGTAGTTCAACCACACAAAATATGCACCTGAGATGAACTGAAGTCTTATCAGAAGTGTTTTCCATGGTTTTCTCAGCTTTTCATTTAACCTTAACTAGTCAAATTTATgaaatttggacattttccacaggAACAATTCTTCTACTGATTTGGAGTTATTGTGTTTTCTCCCAGGTCCCAAAACGAAACAGACAACTTTACTGGTAATTAGATTACTAATGCATTCATCTGGTAAGCATTACTTGATTTTGTCTTCTAGGGCATCAAGTTATTACgaaagagaagctgcatgtacagtgcattcggaaagtattcagaccccttgacttttcccacattttgttatattattcTCAAATTGATCAAATTATTTTTTAtcccctcatcattctacacacaatacctcataatgacaattTTTGGggtgcaaatttattacaaataaaaaaacggcTATCACAttttaaagtattcagaccctgtactcagtactttgctgaag
>XM_021603495.2
GCAAGGACAATTCTTGAATGGGATACCGGAATGGGCAGAGCAGGGGGAAACAACAAACTGCAGAAGGATCTCATTACCGTGCGCTGACACTTAGCAGGGGCAGAACGCATTTATACTTTTGTAGAACATAGTTCCCTCATGTTTTTGAGAGGCGTTAAATCACAAGATTAGTGTGCCACCACAAAGGAAGAGCGACAAAGAGCGGGATTCGAAGGACAAAGGAAAGCTGTTTTAATTGATTTCAAACAACAGAACTACTACAATTGGGAAAACATTATATGTTTTCAAGTACATTTTTCCCCCACTGAACGTTTGCGGTATTCCTGTTAGAGAAATGTAATGCAACGTACTGTACAATTATAAAGGAATTCACTTTACAGTGACATTCGAGACAATTTGTTAACCATCTATTCGGAGACAAAGAGCAAGACATTACCTATCGCTTGAGATAAGACTGGAATTTATATTCTGCAAGGACACGGAAAGCGTTCAACAATATGGGAAAAGGAGCCTTCCCTGAGCTGTAAACATGTATCCGTCACACAGAGAAAGGGAACAACCCATCTTCAGTGCCAGAGCGCACGTCTTCCAGATAGACCCGGCCACCAAGAGGAACTGGCTTCCAGCCAGCAAGCATGCCGTCACTGTCTCCTTCTTCTACGATGCCAATCGGAGTGTGTACCGCATCATCAGTGTGGGGGGCACCAAGGCCATCATCAACAGCACCATCACCCCCAACATGACCTTCACCAAAACCTCCCAGAAGTTTGGCCAGTGGGCTGACAGCCGCGCCAACACCGTGTATGGCCTGGGCTTTGCCACTGAGCAACAGCTTCAGCAGTTTTCAGACCAGTTCAAGGAAGTGAAAGAAGCAGCGCGTCTTGCAAGGGAGAAATCACAGGAGAAATTTGAACTGACCAACCCTGCGCTGAATATCGCCGCCCCACAGGACTTATCAGAGGACCGCCACTCGCCGCCGCTGCTGACTGTCAACGGACCCGAGGACAAGCTGTTCCGCAGCAAGAGCGCCGACATGGAGCAGCTGACGTCGGAGAAGGAGCGCATTAAGAAGATGCTGTCTGAAGGGTCCATATGTGAGATTAACCTGGAGGCAGAGCTGTTCACCCTGCAGGATAGCAACGCTAAGCTAGTGGCGGCGCTTCACGAGGCTAACACTGGCGTGGAAGAGTGGAAGAAACAGCTGGCTGAGTATCAGGAGGAGACTGGCAGGCTCCGAGATCAGGTGGCAGAGCTGGAGGCTCAGAGCGGGCGGCCTGATCCCAGTGAATCGGAGACGAGGGATGAGCTGACCCAGACGTTAGAGGAGTTGGAAGCCTTGCTCAAAGCTAAAGATGAGGAAATCCACAATCTACAGAGCAAGAATTCAGATATTCCTGatttagagaaagagagggaagaggcggTTCAGAGACTTCAGGATCTGGAGACACGGAATGCAGAACTTGAGCAACGGGTGGAGAAAGCCGAGCAGACTCTGGCTTCCTCTCTGGAGGAGCGGGATAGGGCGGAGAGTGAGGTTCAGCGGGTCATCGACGTCCTGGATGTCAAGATCTACGACCTGAATGACCTACGACAGAGCTTGGCCAAGCTCATCGACAAATAGAGCAACGCGATGACAGGATGGTAGAGGGCGGTGGACAAGGACGGAAAGGAAGCTAGCTCTTTTGGAACAATGTTTGCTTAAGCACATTATTACAGAGGTTAAGAGTAGAACCGTGGATCCACCCATTGCAGCGGTACATTGCTCCTACCCACCACCTTGAAAATAACAATCTAATATTTTTTCTTCGTCGCTGTGAGAATTGTTGAGTCGACGTTTACACCATTTATCTCAATGTTTTGTTGGGTTATGATTCAGTCAACCTGCTATTATAGAAGTTATCTTGAACTTTTAAAAGTAGTTGAATTGAATCTGGGCTTGTACTTAAAAATGTAGTTGCCAAATTATTGTTTCCGTTTGTCAGTATTAACAATTAATAATAATTTACTTCTGTTGTTTTATGTATTGTATTACATTAACAGATAACATAATTATTTGATCATCCTACAGAAATGTTGCTGCGGAGGGTTTATCACCAAGGGTACTCAATGACAAAACTTAATGAGCTCAGTGAAGAACCTTGCCAAGTACAGTAATGTGAGTTATGCGCATTACCCAATGTGCAACCTTTTACAAATAGATTTAAAAGCACAAGTAGTGTTATTAGTAAAGATGTACTGTACTTGATTCAATGCAAAAGCTAACCTGGTATCTCTACTTTCACTGATGCACACCATCGAGATTCTCTTCTGACCTAGGCATTGAGGCATTTTTTCATGGTATTATTTAGGTACAAATAAGGTTAAATCAGTGTTGAATTAGCAATACAGTTTTTTGACAAGCACTCTGTAGGTAATGTAATCTCACCTTGTTCATGTAGACAAACTGCAATTCTGTTGAACAATGACCACATTTACATACATTTCGGTTTGTAGCTCATATCCTGCTTAAGGTCTTATTCGGGATAagctgtttacatgcaccttTGATATCCCGCTCACAAGTATCCATGTGACTAAATAGTATATTCCTAATTTAAGTTcatatgggttaaatggaaaaGTAACTGAAATGTGGACACTGACTGTCggcctataacctctcacatgtaGAGTAATATAACATTAACTACTGCAGAATAATGCATTTCTTACTGTAAAATGGTACAACAAATGTTAATTTGTctcgggaacaggagtggagaaatatttttttctttcagcATCTATTGAGAAAATGTGAATACGTGTGTAACATGTTATATTTGACACTGTTTTGCAAGCAGACAGTAGTTCAACCACACAAAATATGCACCTGAGATGAACTGAAGTCTTATCAGAAGTGTTTTCCATGGTTTTCTCAGCTTTTCATTTAACCTTAACTAGTCAAATTTATgaaatttggacattttccacaggAACAATTCTTCTACTGATTTGGAGTTATTGTGTTTTCTCCCAGGTCCCAAAACGAAACAGACAACTTTACTGGTAATTAGATTACTAATGCATTCATCTGGTAAGCATTACTTGATTTTGTCTTCTAGGGCATCAAGTTATTACgaaagagaagctgcatgtacagtgcattcggaaagtattcagaccccttgacttttcccacattttgttatattattcTCAAATTGATCAAATTATTTTTTAtcccctcatcattctacacacaatacctcataatgacaattTTTGGggtgcaaatttattacaaataaaaaaacggcTATCACAttttaaagtattcagaccctgtactcagtactttgctgaag
>XM_021603496.2
GCAAGGACAATTCTTGAATGGGATACCGGAATGGGCAGAGCAGGGGGAAACAACAAACTGCAGAAGGATCTCATTACCGTGCGCTGACACTTAGCAGGGGCAGAACGCATTTATACTTTTGTAGAACATAGTTCCCTCATGTTTTTGAGAGGCGTTAAATCACAAGATTAGTGTGCCACCACAAAGGAAGAGCGACAAAGAGCGGGATTCGAAGGACAAAGGAAAGCTGTTTTAATTGATTTCAAACAACAGAACTACTACAATTGGGAAAACATTATATGTTTTCAAGTACATTTTTCCCCCACTGAACGTTTGCGGTATTCCTGTTAGAGAAATGTAATGCAACGTACTGTACAATTATAAAGGAATTCACTTTACAGTGACATTCGAGACAATTTGTTAACCATCTATTCGGAGACAAAGAGCAAGACATTACCTATCGCTTGAGATAAGACTGGAATTTATATTCTGCAAGGACACGGAAAGCGTTCAACAATATGGGGGAACAACCCATCTTCAGTGCCAGAGCGCACGTCTTCCAGATAGACCCGGCCACCAAGAGGAACTGGCTTCCAGCCAGCAAGCATGCCGTCACTGTCTCCTTCTTCTACGATGCCAATCGGAGTGTGTACCGCATCATCAGTGTGGGGGGCACCAAGGCCATCATCAACAGCACCATCACCCCCAACATGACCTTCACCAAAACCTCCCAGAAGTTTGGCCAGTGGGCTGACAGCCGCGCCAACACCGTGTATGGCCTGGGCTTTGCCACTGAGCAACAGCTTCAGCAGTTTTCAGACCAGTTCAAGGAAGTGAAAGAAGCAGCGCGTCTTGCAAGGGAGAAATCACAGGAGAAATTTGAACTGACCAACCCTGCGCTGAATATCGCCGCCCCACAGCTCTCTCAGGACTTATCAGAGGACCGCCACTCGCCGCCGCTGCTGACTGTCAACGGACCCGAGGACAAGCTGTTCCGCAGCAAGAGCGCCGACATGGAGCAGCTGACGTCGGAGAAGGAGCGCATTAAGAAGATGCTGTCTGAAGGGTCCATATGTGAGATTAACCTGGAGGCAGAGCTGTTCACCCTGCAGGATAGCAACGCTAAGCTAGTGGCGGCGCTTCACGAGGCTAACACTGGCGTGGAAGAGTGGAAGAAACAGCTGGCTGAGTATCAGGAGGAGACTGGCAGGCTCCGAGATCAGGTGGCAGAGCTGGAGGCTCAGAGCGGGCGGCCTGATCCCAGTGAATCGGAGACGAGGGATGAGCTGACCCAGACGTTAGAGGAGTTGGAAGCCTTGCTCAAAGCTAAAGATGAGGAAATCCACAATCTACAGAGCAAGAATTCAGATATTCCTGatttagagaaagagagggaagaggcggTTCAGAGACTTCAGGATCTGGAGACACGGAATGCAGAACTTGAGCAACGGGTGGAGAAAGCCGAGCAGACTCTGGCTTCCTCTCTGGAGGAGCGGGATAGGGCGGAGAGTGAGGTTCAGCGGGTCATCGACGTCCTGGATGTCAAGATCTACGACCTGAATGACCTACGACAGAGCTTGGCCAAGCTCATCGACAAATAGAGCAACGCGATGACAGGATGGTAGAGGGCGGTGGACAAGGACGGAAAGGAAGCTAGCTCTTTTGGAACAATGTTTGCTTAAGCACATTATTACAGAGGTTAAGAGTAGAACCGTGGATCCACCCATTGCAGCGGTACATTGCTCCTACCCACCACCTTGAAAATAACAATCTAATATTTTTTCTTCGTCGCTGTGAGAATTGTTGAGTCGACGTTTACACCATTTATCTCAATGTTTTGTTGGGTTATGATTCAGTCAACCTGCTATTATAGAAGTTATCTTGAACTTTTAAAAGTAGTTGAATTGAATCTGGGCTTGTACTTAAAAATGTAGTTGCCAAATTATTGTTTCCGTTTGTCAGTATTAACAATTAATAATAATTTACTTCTGTTGTTTTATGTATTGTATTACATTAACAGATAACATAATTATTTGATCATCCTACAGAAATGTTGCTGCGGAGGGTTTATCACCAAGGGTACTCAATGACAAAACTTAATGAGCTCAGTGAAGAACCTTGCCAAGTACAGTAATGTGAGTTATGCGCATTACCCAATGTGCAACCTTTTACAAATAGATTTAAAAGCACAAGTAGTGTTATTAGTAAAGATGTACTGTACTTGATTCAATGCAAAAGCTAACCTGGTATCTCTACTTTCACTGATGCACACCATCGAGATTCTCTTCTGACCTAGGCATTGAGGCATTTTTTCATGGTATTATTTAGGTACAAATAAGGTTAAATCAGTGTTGAATTAGCAATACAGTTTTTTGACAAGCACTCTGTAGGTAATGTAATCTCACCTTGTTCATGTAGACAAACTGCAATTCTGTTGAACAATGACCACATTTACATACATTTCGGTTTGTAGCTCATATCCTGCTTAAGGTCTTATTCGGGATAagctgtttacatgcaccttTGATATCCCGCTCACAAGTATCCATGTGACTAAATAGTATATTCCTAATTTAAGTTcatatgggttaaatggaaaaGTAACTGAAATGTGGACACTGACTGTCggcctataacctctcacatgtaGAGTAATATAACATTAACTACTGCAGAATAATGCATTTCTTACTGTAAAATGGTACAACAAATGTTAATTTGTctcgggaacaggagtggagaaatatttttttctttcagcATCTATTGAGAAAATGTGAATACGTGTGTAACATGTTATATTTGACACTGTTTTGCAAGCAGACAGTAGTTCAACCACACAAAATATGCACCTGAGATGAACTGAAGTCTTATCAGAAGTGTTTTCCATGGTTTTCTCAGCTTTTCATTTAACCTTAACTAGTCAAATTTATgaaatttggacattttccacaggAACAATTCTTCTACTGATTTGGAGTTATTGTGTTTTCTCCCAGGTCCCAAAACGAAACAGACAACTTTACTGGTAATTAGATTACTAATGCATTCATCTGGTAAGCATTACTTGATTTTGTCTTCTAGGGCATCAAGTTATTACgaaagagaagctgcatgtacagtgcattcggaaagtattcagaccccttgacttttcccacattttgttatattattcTCAAATTGATCAAATTATTTTTTAtcccctcatcattctacacacaatacctcataatgacaattTTTGGggtgcaaatttattacaaataaaaaaacggcTATCACAttttaaagtattcagaccctgtactcagtactttgctgaag

Function

NR:

description
homer protein homolog 3-like isoform X3

GO: NA

KEGG:

id description
K15010 HOMER; homer

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603494.2 False 3359 mRNA 0.43 11 58033672 58081875
XM_021603495.2 False 3350 mRNA 0.43 10 58033672 58081875
XM_021603496.2 True 3309 mRNA 0.43 10 58033672 58081875

Neighbor

gene id symbol gene type direction distance location
LOC110522874 NA coding downstream 19012 58002584 ~ 58014660 (-)
LOC110524135 arrdc2 coding downstream 35232 57989745 ~ 57998440 (-)
LOC110524132 LOC106613620 coding downstream 151958 57876328 ~ 57881714 (-)
LOC110524131 LOC106613618 coding downstream 158808 57866562 ~ 57874864 (-)
wdr18 LOC106613619 coding downstream 171213 57771636 ~ 57862459 (-)
LOC110524138 LOC106613627 coding upstream 10436 58090616 ~ 58109445 (-)
pgpi pgpi coding upstream 33923 58115798 ~ 58120039 (-)
LOC110524141 LOC106613631 coding upstream 82043 58163918 ~ 58187049 (-)
LOC118964716 LOC106613467 coding upstream 295683 58377558 ~ 58380045 (-)
LOC110524144 LOC106613635 coding upstream 297905 58379780 ~ 58409320 (-)
G420194 NA non-coding downstream 2818 58028971 ~ 58030854 (-)
G420184 NA non-coding downstream 10869 58022286 ~ 58022803 (-)
G419900 NA non-coding downstream 48120 57985224 ~ 57985552 (-)
G419834 NA non-coding downstream 100256 57900287 ~ 57933416 (-)
G419815 NA non-coding downstream 181735 57841853 ~ 57851937 (-)
G420233 NA non-coding upstream 5068 58086943 ~ 58087264 (-)
G420192 NA non-coding upstream 7867 58089742 ~ 58090474 (-)
G420236 NA non-coding upstream 27782 58109657 ~ 58111574 (-)
G420243 NA non-coding upstream 53481 58135356 ~ 58135856 (-)
G419714 NA other downstream 327736 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 407498 57612040 ~ 57627128 (-)
G419603 NA other downstream 422105 57611059 ~ 57611567 (-)
G418830 NA other downstream 1199077 56834026 ~ 56834595 (-)
LOC110522975 LOC106613586 other downstream 1322288 56703896 ~ 56711499 (-)
G420193 NA other upstream 30512 58112387 ~ 58114060 (-)
G420421 NA other upstream 331253 58413128 ~ 58414143 (-)
G420982 LOC106613655 other upstream 944228 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 1050995 59131152 ~ 59138429 (-)
G422347 NA other upstream 2018890 60100765 ~ 60101056 (-)

Expression


Co-expression Network