pgpi (pgpi)


Basic Information

Item Value
gene id pgpi
gene name pgpi
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58115798 ~ 58120039 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036976510.1
AGAAACAGATGACTGATCAACTGTGAAAGGACAGCAAAATCCCAGCTGCATTCTTGGGTTTGAGCCATTTGGAGAGCACACTATTAATGCCAGTTGGGTAGCAGTCCAGGAACTGAAGAAGCTGGGCCTGGGAAAGGACATAGACCTGCATGTGTATGAGGTGCCTGTCGACTACCAGGCAGTCCAGAGTTTGATTCCATCACTATGGAAGCAGTATCATCCCCAGTTAGTGGTCCATGTTGGAGTCTCAGGTATGGCCACCACCGTTACCTTAGAGAAATGTGGCCGTAACCATGGCTACAAGGGTCTGGACAACAGCCGCTTCTGTCCCCATTCTCAGTGTTGCATTGAGGGGGGCCCAGACTGCATTGACTCGGTTATTGACATGGAATCGGTCTGCAAAAGAGTGACAGCCTCTGGACTAGGAGTAGCAGTCTCCGTATCAAAAGATGCTGGCAGATACCTCTGTGACTTCACCTACTACACCTCTCTGTACCTGAGCCATGGGCACTCCGCATTCATCCACGTGCCTCCCATAGAGAAGCCTTATAGTGGAGTGGACTTGGGTAGGGCCCTCCAAGCCATCATACAAGAGATGTTGGACATGCTCGACCAAACCGAAGAGAAGATCCACTGCCAGTGTGTGCACTAATTTACCTGTGAAAGCCAACTGCCTTTAACCCCTTACACACAAGAGAGATTATGCACTTAACCACAACTAGCCAAACAATGTTTTTGTTTCATTACCTCTTCTGGTGCAAATTCAAAGATGGCAACCATACAGACACTTCCAGTTGACTTATTTCACCGCCATTTTGTCACATTCTTCATTGCTGTTTCCTCAAGCTCTTGACCTGGcccatttttttttatcttaatGGTTATGATGAGGTGAGTAAAGCTGGTTCGGTGTTTTGGTGTAACGAGCTTTCCCCACATTCTGTGGACACAGAAGAGATTGAGCAAGACGATTTGAACTGGAATAACAGGAATTGACAGAAGTGAGCCACATGCTTGTTCTAAGAGCGCTACTCTTTTTGAATCTGTTGTTGAGAAGCTTCCATGGTTTTGACTCTTTATCCATACTTACACTGCTATCTCAGAAACAGGGTTAGTGTATGGAATAGCCCTTTTTTGCATCAACTCAATGTACaagttccacattatttattgttatctatctagttattTAAGGGGAATTTCTGTCTTTGGTTGTTATTCATCATATCTTGAAGGAGTTATTTTTGTAACCAGCTTTTTCATTAAAGTCTTAGGCGTCCACTTGTTGGTGCTACTTAA
>NM_001160660.1
AGATGACTGATCAACTGTGAAAGGACAGCAAAATCCCAGCTGCATTCTTGGTAAAATTTAGAATAACAAACGAAAACATTTACTACAGCTAAGAAAAATATGGACAATAGTAACCAAACTGTTGTTGTAACAGGGTTTGAGCCATTTGGAGAGCACACTATTAATGCCAGTTGGGTAGCAGTCCAGGAACTGAAGAAGCTGGGCCTGGGAAAGGACATAGACCTGCATGTGTATGAGGTGCCTGTCGACTACCAGGCAGTCCAGAGTTTGATTCCATCACTATGGAAGCAGTATCATCCCCAGTTAGTGGTCCATGTTGGAGTCTCAGGTATGGCCACCACCGTTACCTTAGAGAAATGTGGCCGTAACCATGGCTACAAGGGTCTGGACAACAGCCGCTTCTGTCCCCATTCTCAGTGTTGCATTGAGGGGGGCCCAGACTGCATTGACTCGGTTATTGACATGGAATCGGTCTGCAAAAGAGTGACAGCCTCTGGACTAGGAGTAGCAGTCTCCGTATCAAAAGATGCTGGCAGATACCTCTGTGACTTCACCTACTACACCTCTCTGTACCTGAGCCATGGGCACTCCGCATTCATCCACGTGCCTCCCATAGAGAAGCCTTATAGTGGAGTGGACTTGGGTAGGGCCCTCCAAGCCATCATACAAGAGATGTTGGACATGCTCGACCAAACCGAAGAGAAGATCCACTGCCAGTGTGTGCACTAATTTACCTGTGAAAGCCAACTGCCTTTAACCCCTTACACACAAGAGAGATTATGCACTTAACCACAACTAGCCAAACAATGTTTTTGTTTCATTACCTCTTCTGGTGCAAATTCAAAGATGGCAACCATACAGACACTTCCAGTTGACTTATTTCACCGCCATTTTGTCACATTCTTCATTGCTGTTTCCTCAAGCTCTTGACCTGGcccatttttttttatcttaatGGTTATGATGAGGTGAGTAAAGCTGGTTCGGTGTTTTGGTGTAACGAGCTTTCCCCACATTCTGTGGACACAGAAGAGATTGAGCAAGACGATTTGAACTGGAATAACAGGAATTGACAGAAGTGAGCCACATGCTTGTTCTAAGAGCGCTACTCTTTTTGAATCTGTTGTTGAGAAGCTTCCATGGTTTTGACTCTTTATCCATACTTACACTGCTATCTCAGAAACAGGGTTAGTGTATGGAATAGCCCTTTTTTGCATCAACTCAATGTACaagttccacattatttattgttatctatctagttattTAAGGGGAATTTCTGTCTTTGGTTGTTATTCATCATATCTTGAAGGAGTTATTTTTGTAACCAGCTTTTTCATTAAAGTCTTAGGCGTCC

Function

NR:

description
unnamed protein product

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG:

id description
K01304 pcp; pyroglutamyl-peptidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036976510.1 False 1299 mRNA 0.45 5 58115798 58120039
NM_001160660.1 True 1357 mRNA 0.44 5 58115817 58120033

Neighbor

gene id symbol gene type direction distance location
LOC110524138 LOC106613627 coding downstream 6353 58090616 ~ 58109445 (-)
homer3b LOC106613626 coding downstream 33923 58033672 ~ 58081875 (-)
LOC110522874 NA coding downstream 101138 58002584 ~ 58014660 (-)
LOC110524135 arrdc2 coding downstream 117358 57989745 ~ 57998440 (-)
LOC110524132 LOC106613620 coding downstream 234084 57876328 ~ 57881714 (-)
LOC110524141 LOC106613631 coding upstream 43879 58163918 ~ 58187049 (-)
LOC118964716 LOC106613467 coding upstream 257519 58377558 ~ 58380045 (-)
LOC110524144 LOC106613635 coding upstream 259741 58379780 ~ 58409320 (-)
mast3b LOC106613636 coding upstream 296833 58416872 ~ 58475233 (-)
LOC110524151 LOC106573894 coding upstream 426345 58546384 ~ 58567683 (-)
G420236 NA non-coding downstream 4224 58109657 ~ 58111574 (-)
G420192 NA non-coding downstream 25324 58089742 ~ 58090474 (-)
G420233 NA non-coding downstream 28534 58086943 ~ 58087264 (-)
G420179 NA non-coding downstream 32075 58032121 ~ 58083723 (-)
G420243 NA non-coding upstream 15317 58135356 ~ 58135856 (-)
G420248 NA non-coding upstream 24449 58144488 ~ 58145156 (-)
G420254 NA non-coding upstream 34541 58154580 ~ 58154803 (-)
G420313 NA non-coding upstream 131599 58251638 ~ 58251915 (-)
G420314 NA non-coding upstream 133163 58253202 ~ 58253429 (-)
G420193 NA other downstream 1738 58112387 ~ 58114060 (-)
G419714 NA other downstream 409862 57699745 ~ 57705936 (-)
LOC110524128 LOC107602773 other downstream 489624 57612040 ~ 57627128 (-)
G419603 NA other downstream 504231 57611059 ~ 57611567 (-)
G418830 NA other downstream 1281203 56834026 ~ 56834595 (-)
G420421 NA other upstream 293089 58413128 ~ 58414143 (-)
G420982 LOC106613655 other upstream 906064 59026103 ~ 59036299 (-)
lsg1 lsg1 other upstream 1012831 59131152 ~ 59138429 (-)
G422347 NA other upstream 1980726 60100765 ~ 60101056 (-)
LOC110524239 LOC106573579 other upstream 2938955 61058949 ~ 61081864 (-)

Expression


Co-expression Network