Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110524139 |
| gene name | lsm4 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048569.1 |
| NCBI id | CM023223.2 |
| chromosome length | 100798064 |
| location | 58120065 ~ 58124398 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| lsm4 | Predicted to enable U6 snRNA binding activity. Predicted to be involved in P-body assembly and spliceosomal snRNP assembly. Predicted to act upstream of or within mRNA splicing, via spliceosome and nuclear-transcribed mRNA catabolic process. Predicted to be located in nucleus. Predicted to be part of U6 snRNP and spliceosomal tri-snRNP complex. Predicted to be active in P-body. Orthologous to human LSM4 (LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated). |
| description |
|---|
| U6 snRNA-associated Sm-like protein LSm4 |
| id | description |
|---|---|
| K12623 | LSM4; U6 snRNA-associated Sm-like protein LSm4 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_021603502.2 | True | 1226 | mRNA | 0.42 | 5 | 58120065 | 58124398 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110522977 | NA | coding | upstream | 33796 | 58084721 ~ 58086269 (+) |
| LOC110524136 | LOC100136537 | coding | upstream | 89171 | 58028761 ~ 58030894 (+) |
| LOC110524134 | NA | coding | upstream | 213405 | 57874805 ~ 57906660 (+) |
| sid1 | NA | coding | upstream | 216836 | 57902102 ~ 57903229 (+) |
| LOC118964626 | LOC106595063 | coding | upstream | 268547 | 57841922 ~ 57851518 (+) |
| LOC110524140 | LOC106613630 | coding | downstream | 34123 | 58158521 ~ 58160134 (+) |
| LOC110524142 | NA | coding | downstream | 74989 | 58199387 ~ 58205370 (+) |
| LOC110524143 | LOC106573897 | coding | downstream | 187934 | 58312332 ~ 58370090 (+) |
| LOC118964627 | NA | coding | downstream | 277031 | 58401429 ~ 58404889 (+) |
| LOC118964530 | NA | coding | downstream | 356539 | 58480937 ~ 58482309 (+) |
| G419989 | NA | non-coding | upstream | 8539 | 58109666 ~ 58111526 (+) |
| G419986 | LOC106613627 | non-coding | upstream | 13120 | 58105115 ~ 58106945 (+) |
| G419976 | NA | non-coding | upstream | 29590 | 58089993 ~ 58090475 (+) |
| G419979 | NA | non-coding | upstream | 30248 | 58089696 ~ 58089817 (+) |
| G419980 | NA | non-coding | upstream | 32168 | 58087666 ~ 58087897 (+) |
| G419975 | NA | non-coding | downstream | 271 | 58124669 ~ 58124739 (+) |
| G419995 | NA | non-coding | downstream | 17491 | 58141889 ~ 58142108 (+) |
| G419999 | NA | non-coding | downstream | 27578 | 58151976 ~ 58153840 (+) |
| G420026 | NA | non-coding | downstream | 81466 | 58205864 ~ 58210110 (+) |
| G420055 | NA | non-coding | downstream | 121592 | 58245990 ~ 58246538 (+) |
| G419452 | NA | other | upstream | 220417 | 57884380 ~ 57899648 (+) |
| LOC110524119 | LOC106613607 | other | upstream | 752728 | 57352343 ~ 57367627 (+) |
| LOC100135807 | LOC106613594 | other | upstream | 1161900 | 56943838 ~ 56958165 (+) |
| G418251 | rtca | other | upstream | 1194889 | 56923924 ~ 56925176 (+) |
| G418119 | LOC106613588 | other | upstream | 1390244 | 56726185 ~ 56729821 (+) |
| G420117 | LOC100846954 | other | downstream | 288725 | 58411240 ~ 58418268 (+) |
| G420634 | NA | other | downstream | 818330 | 58942728 ~ 58944217 (+) |
| LOC110524226 | LOC106573564 | other | downstream | 2569859 | 60694220 ~ 60695905 (+) |
| G423922 | NA | other | downstream | 3597139 | 61721537 ~ 61722024 (+) |
| G424079 | NA | other | downstream | 3981125 | 62105523 ~ 62105872 (+) |
