LOC110524140 (LOC106613630)


Basic Information

Item Value
gene id LOC110524140
gene name LOC106613630
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048569.1
NCBI id CM023223.2
chromosome length 100798064
location 58158521 ~ 58160134 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021603503.2
CGGCAGCATGCGATCGCACACATTGGAACTTCTACCCCTCTAGTCGGGAGATTAACCATCGACTGTTTCTTATCAATTGTTTATTAACAAGGGAAAAAACGACAACATTTGAGGCAAAAGGTGATTTGTACCCTGAACTTGGAGAAGGGGTAGGGCAACTTTAAAAGAGCATTTGATTTAATGTGCAAATTACGCATCTTTTCCTCGACAGCAACTGAGAGGTTATGGGAACTCCTCTTTCTGTCGTAAGGCTCTGCTGACTTTTTACAGCTGCTGTCATCTTAGATTTTGTCTTTTACCAAAATATGATGAAGAATGACATTCATTTAAACCTTGTAGATGCCACTAATCTAAAGCCCCATCTCCGCGACGGCGAGAGCATTCTCAACTCCCCGGACCTTGGGCTGCTGAAACTGGCTTCCCCGGAGCTGGAGAGACTCCTCATTCAGTCCAACGGAATGGTCGTAACAACACCGACCTCTCAGTTCCTCTACCCCAAGTCAGTAACTGACGAACAGGAGTTTGCAGAGGGATTCGTCAAGGCTCTGGAGGACTTACACAAACAGAACCAGCTGAACGGGGGGACTTGCGCTCAAATGAACAGTCTCGACCTAAGTACCAACGTGGCTCCTGTCACTGTACACATGGACTTACCCGTCTATACGAACTTGAACAGTTATGGTAATGGACCTTTGGGTACCACTGTCAATTACTCCACAGACACTGTACCcttcccacctcctccctctcaccaTTTAGGTGGCACACAGCAGCAACAAGCACATTCCCGGTTGCAATCCTTGAAGGATGAGCCGCAGACAGTCCCTGACTTGCACAGCTTCGGCGACAGTCCACCACTGTCACCTATCAACATGGACACACAGGAGCGCATTAAAGCCGAGAGGAAAAAGCTGCGGAATAGAATTGCTGCGTCCAAGTGCCGAAAGAGGAAACTGGAGAGGATATCCAGACTCGAAGACAAAGTCAATAACCTAAAAACTCAAAACACTGACCTAGCCTCAACGGCAAGTGTACTCCGGGATCAAGTGGCTCAGCTAAAACAAAATGTTTTGAATCATGTGAACAGCGGATGCCAATTGTTGCCACATCAAGTTCAAGTGTACTAATCGCAGGACGACATTGGTCAACCAGCATAAATAAGCTCAATATCTGTTCTCTTGTTGGCTCTCAAATATCTCAATTATGCACGTAGAGCCATCGACTTTACAGACTAAAAGGACTTCGCTAATGTACATTTTCTGTTTACACATTCTTTATCATGTGTGTAAGACTGGATCAAACCAGTTCATCATTATTGTATTACTATATCATAGCCTTATACTGAATAAATACATATTTGCATGTTTATTGACAAACTCGAATGTTACCTAAGAGGGTGTCATTGGGTGcaagtaatttttttttttttttaccccttttaaCGTTTACAAGCAAACACCTGTACATTTTATATTCAATGCTCCAGTGTCTTATTTCAGTGTTATCTTAATGTGAAACTGTTGTCACCTTTTTGTTGCACTGAATATTTCCCTTCACATTCCTATTTTACTTGGATTCAGTTATCAAATAAACCTTGCTTGGTAATTCAAGGCA

Function

NR:

description
transcription factor jun-D-like

GO: NA

KEGG:

id description
K04449 JUND; transcription factor jun-D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021603503.2 True 1614 mRNA 0.43 1 58158521 58160134

Neighbor

gene id symbol gene type direction distance location
LOC110524139 lsm4 coding upstream 34123 58120065 ~ 58124398 (+)
LOC110522977 NA coding upstream 72252 58084721 ~ 58086269 (+)
LOC110524136 LOC100136537 coding upstream 127627 58028761 ~ 58030894 (+)
LOC110524134 NA coding upstream 251861 57874805 ~ 57906660 (+)
sid1 NA coding upstream 255292 57902102 ~ 57903229 (+)
LOC110524142 NA coding downstream 39253 58199387 ~ 58205370 (+)
LOC110524143 LOC106573897 coding downstream 152198 58312332 ~ 58370090 (+)
LOC118964627 NA coding downstream 241295 58401429 ~ 58404889 (+)
LOC118964530 NA coding downstream 320803 58480937 ~ 58482309 (+)
LOC110524147 LOC106613637 coding downstream 323909 58484043 ~ 58493673 (+)
G419999 NA non-coding upstream 4681 58151976 ~ 58153840 (+)
G419995 NA non-coding upstream 16413 58141889 ~ 58142108 (+)
G419975 NA non-coding upstream 33782 58124669 ~ 58124739 (+)
G419989 NA non-coding upstream 46995 58109666 ~ 58111526 (+)
G419986 LOC106613627 non-coding upstream 51576 58105115 ~ 58106945 (+)
G420026 NA non-coding downstream 45730 58205864 ~ 58210110 (+)
G420055 NA non-coding downstream 85856 58245990 ~ 58246538 (+)
G420062 NA non-coding downstream 108985 58269119 ~ 58269426 (+)
G420025 NA non-coding downstream 212986 58373120 ~ 58373991 (+)
G420093 NA non-coding downstream 219782 58379916 ~ 58380305 (+)
G419452 NA other upstream 258873 57884380 ~ 57899648 (+)
LOC110524119 LOC106613607 other upstream 791184 57352343 ~ 57367627 (+)
LOC100135807 LOC106613594 other upstream 1200356 56943838 ~ 56958165 (+)
G418251 rtca other upstream 1233345 56923924 ~ 56925176 (+)
G418119 LOC106613588 other upstream 1428700 56726185 ~ 56729821 (+)
G420117 LOC100846954 other downstream 252989 58411240 ~ 58418268 (+)
G420634 NA other downstream 782594 58942728 ~ 58944217 (+)
LOC110524226 LOC106573564 other downstream 2534123 60694220 ~ 60695905 (+)
G423922 NA other downstream 3561403 61721537 ~ 61722024 (+)
G424079 NA other downstream 3945389 62105523 ~ 62105872 (+)

Expression


Co-expression Network